Wall clock time and date at job start Tue Mar 31 2020 11:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.38010 * 119.99780 * 180.02562 * 2 1 3 13 13 N 1.28901 * 124.81544 * 359.72174 * 12 2 1 14 14 C 1.34808 * 117.87409 * 179.76861 * 13 12 2 15 15 C 1.41102 * 128.73154 * 180.21279 * 14 13 12 16 16 C 1.37192 * 120.43671 * 180.30922 * 15 14 13 17 17 C 1.50700 * 119.70232 * 180.02562 * 16 15 14 18 18 F 1.39899 * 109.47742 * 89.99655 * 17 16 15 19 19 F 1.39902 * 109.46864 * 209.99730 * 17 16 15 20 20 F 1.39905 * 109.47110 * 329.99358 * 17 16 15 21 21 C 1.38716 * 120.59803 * 0.02562 * 16 15 14 22 22 C 1.37726 * 119.97751 * 359.94427 * 21 16 15 23 23 C 1.39254 * 120.20169 * 0.07591 * 22 21 16 24 24 S 1.75797 * 124.81612 * 180.02562 * 12 2 1 25 25 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 26 26 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 27 27 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 28 28 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 29 29 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 1.07999 * 119.77756 * 0.28620 * 15 14 13 32 32 H 1.08005 * 120.01089 * 180.02562 * 21 16 15 33 33 H 1.08000 * 119.89777 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.5589 3.6147 0.6732 8 14 3.4497 3.4098 3.4340 9 1 4.7439 2.8472 3.8962 10 1 3.5032 4.8924 3.4987 11 1 2.3550 2.9154 4.3071 12 6 2.1550 -1.1952 -0.0005 13 7 1.6064 -2.3617 0.0041 14 6 2.4165 -3.4392 -0.0020 15 6 2.0673 -4.8063 -0.0030 16 6 3.0413 -5.7724 -0.0033 17 6 2.6496 -7.2276 -0.0049 18 9 2.5292 -7.6768 -1.3243 19 9 3.6311 -7.9754 0.6545 20 9 1.4250 -7.3817 0.6538 21 6 4.3835 -5.4219 -0.0021 22 6 4.7479 -4.0938 -0.0017 23 6 3.7726 -3.0998 -0.0010 24 16 3.9067 -1.3429 0.0000 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6084 2.0283 -0.5138 29 1 3.1499 1.1383 -0.5138 30 1 4.0390 4.4388 0.8505 31 1 1.0263 -5.0939 -0.0031 32 1 5.1424 -6.1904 -0.0027 33 1 5.7932 -3.8224 -0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301611448.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:36 Heat of formation + Delta-G solvation = -104.139141 kcal Electronic energy + Delta-G solvation = -23106.979873 eV Core-core repulsion = 19036.659850 eV Total energy + Delta-G solvation = -4070.320023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.055 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.16478 -48.67228 -48.62180 -41.24796 -39.03308 -36.87591 -34.72947 -32.75873 -30.97570 -29.81207 -27.68485 -27.17405 -25.40061 -23.83702 -23.20798 -21.46016 -19.83463 -19.48507 -19.35548 -18.79660 -18.62716 -17.55031 -17.28980 -16.57669 -16.24941 -15.94347 -15.56992 -15.42316 -15.31143 -15.08809 -14.94842 -14.88568 -14.77520 -14.70196 -14.51666 -14.09375 -13.62632 -13.21445 -13.12063 -13.03653 -12.93848 -12.80408 -12.65140 -12.21296 -11.85704 -11.79971 -11.22400 -10.69847 -10.60568 -10.54806 -9.26837 -8.63790 -8.20104 -6.44163 -0.41574 -0.21211 0.05928 0.72757 1.36219 1.39294 1.42005 1.50603 1.58414 1.94925 2.36878 2.46519 2.66484 2.98630 3.02921 3.42179 3.46323 3.66824 3.99501 4.15343 4.29414 4.39107 4.59828 4.67578 4.78231 4.85723 4.95237 5.01224 5.05785 5.11370 5.45337 5.56228 5.81190 5.90184 6.20883 6.61640 6.83964 7.27850 8.77572 Molecular weight = 316.06amu Principal moments of inertia in cm(-1) A = 0.024965 B = 0.003229 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.283853 B = 8669.836661 C = 9015.114861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.561 5.561 3 C 0.260 3.740 4 C -0.551 4.551 5 H 0.054 0.946 6 C 0.025 3.975 7 N -0.917 5.917 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.270 1.270 12 C 0.385 3.615 13 N -0.586 5.586 14 C 0.118 3.882 15 C -0.051 4.051 16 C -0.160 4.160 17 C 0.522 3.478 18 F -0.177 7.177 19 F -0.171 7.171 20 F -0.180 7.180 21 C -0.087 4.087 22 C -0.048 4.048 23 C -0.204 4.204 24 S 0.058 5.942 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.023 0.977 30 H 0.271 0.729 31 H 0.146 0.854 32 H 0.174 0.826 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 -17.521 -2.146 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.275 5.275 3 C 0.140 3.860 4 C -0.590 4.590 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.556 5.556 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.195 1.195 12 C 0.010 3.990 13 N -0.316 5.316 14 C -0.004 4.004 15 C -0.073 4.073 16 C -0.165 4.165 17 C 0.467 3.533 18 F -0.158 7.158 19 F -0.152 7.152 20 F -0.161 7.161 21 C -0.109 4.109 22 C -0.071 4.071 23 C -0.324 4.324 24 S 0.310 5.690 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.192 0.808 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.947 -16.343 -2.197 16.517 hybrid contribution -0.369 -0.160 0.756 0.856 sum 0.578 -16.503 -1.441 16.576 Atomic orbital electron populations 1.21751 0.76889 1.03330 1.02186 1.46720 1.07022 1.01593 1.72136 1.19254 0.91337 0.78515 0.96943 1.21598 1.37548 1.07375 0.92486 0.92806 1.25639 0.94632 0.95997 1.01305 1.69996 1.38006 1.14862 1.32739 0.85549 0.78798 0.77596 0.79782 1.19925 1.20240 1.19454 1.23982 0.91843 0.89446 0.93753 1.66309 1.36333 0.96106 1.32861 1.18867 0.87508 0.93028 1.00953 1.20245 1.00344 0.88071 0.98655 1.19658 0.96035 0.90755 1.10028 1.17995 0.74494 0.87051 0.73722 1.93228 1.95765 1.90722 1.36081 1.93197 1.62211 1.78760 1.81045 1.93197 1.45286 1.96383 1.81243 1.20968 0.94260 0.96473 0.99193 1.20549 0.98997 0.90051 0.97523 1.24040 0.98473 0.97576 1.12338 1.85541 1.05581 0.98773 1.79144 0.91633 0.90841 0.90290 0.94187 0.95876 0.92017 0.83644 0.80844 0.82019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.46 10.55 127.77 1.35 4.81 16 2 N -0.56 -23.20 2.94 -736.63 -2.17 -25.37 16 3 C 0.26 12.28 5.14 85.64 0.44 12.72 16 4 C -0.55 -28.34 9.39 25.60 0.24 -28.10 16 5 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 6 C 0.03 1.32 5.46 84.66 0.46 1.78 16 7 N -0.92 -49.70 13.29 21.45 0.28 -49.42 16 8 Si 0.96 41.21 29.54 68.60 2.03 43.23 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 C 0.39 15.65 7.87 179.75 1.41 17.07 16 13 N -0.59 -22.67 9.79 -189.22 -1.85 -24.52 16 14 C 0.12 4.03 6.94 39.76 0.28 4.31 16 15 C -0.05 -1.44 9.44 22.73 0.21 -1.22 16 16 C -0.16 -3.70 5.44 -20.00 -0.11 -3.81 16 17 C 0.52 10.82 3.35 71.24 0.24 11.06 16 18 F -0.18 -3.74 17.30 44.97 0.78 -2.96 16 19 F -0.17 -3.28 16.44 44.97 0.74 -2.54 16 20 F -0.18 -3.99 16.41 44.97 0.74 -3.25 16 21 C -0.09 -1.75 9.39 22.26 0.21 -1.55 16 22 C -0.05 -1.15 10.06 22.39 0.23 -0.92 16 23 C -0.20 -6.53 6.52 22.89 0.15 -6.38 16 24 S 0.06 2.17 21.89 -56.49 -1.24 0.93 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 2.41 7.60 -2.38 -0.02 2.39 16 27 H 0.08 2.58 8.07 -2.38 -0.02 2.56 16 28 H 0.04 1.95 8.07 -2.38 -0.02 1.93 16 29 H 0.02 1.17 7.04 -2.39 -0.02 1.15 16 30 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 31 H 0.15 3.76 7.55 -2.91 -0.02 3.73 16 32 H 0.17 2.30 7.59 -2.91 -0.02 2.28 16 33 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -57.46 316.70 5.58 -51.87 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.17 Total: 2.27 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 5.11 Total: 9.76 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -3.74 Total: -99.31 kcal Atomic # 9 Polarization: -11.01 SS G_CDS: 2.26 Total: -8.76 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.24 Total: 0.93 kcal Total: -57.46 5.58 -51.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301611448.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.268 kcal (2) G-P(sol) polarization free energy of solvation -57.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds