Wall clock time and date at job start Tue Mar 31 2020 11:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86803 * 120.00316 * 2 1 4 4 H 1.48492 * 109.47053 * 239.99521 * 3 2 1 5 5 H 1.48501 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46900 * 119.99377 * 3 2 1 7 7 C 1.39930 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00271 * 168.99422 * 7 2 1 9 9 C 1.41416 * 120.00030 * 348.99709 * 7 2 1 10 10 C 1.40772 * 120.20620 * 331.79822 * 9 7 2 11 11 C 1.37654 * 119.88661 * 180.02562 * 10 9 7 12 12 C 1.38520 * 120.32549 * 359.97438 * 11 10 9 13 13 C 1.39275 * 120.42493 * 0.02752 * 12 11 10 14 14 N 1.39857 * 119.94818 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00057 * 146.35407 * 14 13 12 16 16 O 1.21571 * 120.00140 * 354.85446 * 15 14 13 17 17 C 1.47768 * 119.99999 * 174.86701 * 15 14 13 18 18 C 1.39646 * 120.09875 * 359.97438 * 17 15 14 19 19 C 1.37946 * 120.00863 * 180.23586 * 18 17 15 20 20 C 1.38374 * 120.21420 * 359.49227 * 19 18 17 21 21 Cl 1.73596 * 119.89988 * 180.25222 * 20 19 18 22 22 C 1.39118 * 120.20081 * 0.51402 * 20 19 18 23 23 N 1.39790 * 120.00606 * 179.76414 * 22 20 19 24 24 C 1.38583 * 119.98577 * 359.74115 * 22 20 19 25 25 C 1.38295 * 120.10151 * 0.22745 * 13 12 11 26 26 H 0.97003 * 119.99435 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.05738 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.83464 * 179.97438 * 11 10 9 29 29 H 1.07992 * 119.79069 * 179.97438 * 12 11 10 30 30 H 0.97004 * 120.00292 * 326.34943 * 14 13 12 31 31 H 1.07989 * 119.99881 * 359.96620 * 18 17 15 32 32 H 1.08003 * 119.89280 * 179.72785 * 19 18 17 33 33 H 0.96995 * 119.99553 * 179.97438 * 23 22 20 34 34 H 0.97004 * 119.99898 * 359.97438 * 23 22 20 35 35 H 1.08005 * 120.10312 * 180.02562 * 24 22 20 36 36 H 1.07999 * 120.16395 * 179.75207 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2124 5 1 1.2775 2.7465 -0.0006 6 1 3.0961 1.6963 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0731 -1.2206 -0.1780 9 6 1.3203 -2.4252 0.2348 10 6 0.1510 -2.4366 1.0186 11 6 -0.5128 -3.6215 1.2429 12 6 -0.0362 -4.8037 0.7005 13 6 1.1194 -4.8077 -0.0768 14 7 1.5920 -6.0071 -0.6191 15 6 2.2045 -6.0088 -1.8196 16 8 2.2636 -4.9855 -2.4734 17 6 2.8041 -7.2545 -2.3414 18 6 2.7378 -8.4310 -1.5920 19 6 3.3024 -9.5917 -2.0787 20 6 3.9265 -9.5979 -3.3137 21 17 4.6286 -11.0647 -3.9211 22 6 3.9979 -8.4308 -4.0675 23 7 4.6337 -8.4405 -5.3124 24 6 3.4381 -7.2588 -3.5843 25 6 1.8031 -3.6282 -0.3091 26 1 -0.4849 0.8401 -0.0004 27 1 -0.2246 -1.5174 1.4432 28 1 -1.4096 -3.6294 1.8446 29 1 -0.5636 -5.7284 0.8824 30 1 1.4790 -6.8378 -0.1311 31 1 2.2482 -8.4312 -0.6295 32 1 3.2538 -10.4996 -1.4957 33 1 4.6831 -7.6268 -5.8381 34 1 5.0256 -9.2610 -5.6505 35 1 3.4920 -6.3518 -4.1682 36 1 2.7015 -3.6308 -0.9084 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313451927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:31 Heat of formation + Delta-G solvation = 4.037785 kcal Electronic energy + Delta-G solvation = -22266.651796 eV Core-core repulsion = 18740.835711 eV Total energy + Delta-G solvation = -3525.816085 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32558 -38.96372 -37.16384 -36.57592 -34.90913 -34.42581 -33.00371 -31.10741 -29.80591 -29.17033 -27.84138 -25.29962 -24.13844 -22.63478 -21.47426 -20.85649 -19.68845 -18.26123 -17.56047 -17.15710 -16.56552 -15.89743 -15.53501 -15.14854 -14.75858 -14.52421 -14.27874 -14.01038 -13.91757 -13.85799 -13.04735 -12.86747 -12.55729 -12.12702 -11.88410 -11.86991 -11.68292 -11.29334 -11.13613 -11.09229 -10.94961 -10.65449 -10.49421 -10.14999 -9.76123 -9.53132 -9.16897 -9.02092 -8.89188 -7.88087 -7.41166 -6.89359 -6.64828 -4.33267 0.62094 1.23135 1.87955 2.64619 2.86083 3.10684 3.14327 3.16757 3.25525 3.37730 3.65735 3.86999 3.99755 4.50511 4.68925 4.82153 4.93104 5.11564 5.20427 5.57467 5.71688 5.76821 5.97462 6.16313 6.23897 6.38226 6.38770 6.73950 7.01622 7.04090 7.05281 7.09085 7.28605 7.40097 7.55532 7.72723 7.97239 8.09790 8.16068 8.26891 8.61836 8.71718 8.95987 8.99464 10.28612 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.023463 B = 0.002721 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.104907 B =10287.302840 C =11230.629742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.076 0.924 9 C 0.119 3.881 10 C -0.166 4.166 11 C -0.094 4.094 12 C -0.257 4.257 13 C 0.148 3.852 14 N -0.659 5.659 15 C 0.544 3.456 16 O -0.507 6.507 17 C -0.068 4.068 18 C -0.137 4.137 19 C -0.068 4.068 20 C -0.101 4.101 21 Cl -0.074 7.074 22 C 0.222 3.778 23 N -0.871 5.871 24 C -0.129 4.129 25 C -0.207 4.207 26 H 0.279 0.721 27 H 0.122 0.878 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.404 0.596 34 H 0.401 0.599 35 H 0.145 0.855 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.467 -17.627 -5.396 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.094 0.906 9 C 0.116 3.884 10 C -0.186 4.186 11 C -0.113 4.113 12 C -0.278 4.278 13 C 0.057 3.943 14 N -0.303 5.303 15 C 0.331 3.669 16 O -0.382 6.382 17 C -0.072 4.072 18 C -0.158 4.158 19 C -0.087 4.087 20 C -0.133 4.133 21 Cl -0.046 7.046 22 C 0.116 3.884 23 N -0.411 5.411 24 C -0.152 4.152 25 C -0.228 4.228 26 H 0.090 0.910 27 H 0.140 0.860 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.234 0.766 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.233 0.767 34 H 0.231 0.769 35 H 0.163 0.837 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.386 -16.857 -5.930 18.976 hybrid contribution 0.430 0.101 -0.252 0.508 sum 6.816 -16.756 -6.181 19.116 Atomic orbital electron populations 1.69796 1.07407 1.29029 1.36494 1.25881 0.94837 1.01179 0.92419 0.86314 0.79984 0.80182 0.79883 1.19049 1.20385 1.18913 1.19515 0.95962 0.90419 1.42893 0.90586 1.17501 0.91446 0.91656 0.87844 1.21424 0.98852 0.96663 1.01657 1.20485 0.98368 0.92835 0.99638 1.20061 0.98993 0.97502 1.11283 1.17415 0.94578 0.84552 0.97781 1.43342 1.57636 1.10126 1.19232 1.18204 0.79283 0.88059 0.81396 1.90854 1.56903 1.33267 1.57148 1.19908 0.98670 0.93706 0.94941 1.21044 1.02613 0.91502 1.00620 1.20722 0.95838 0.98886 0.93234 1.20504 1.08445 0.86780 0.97523 1.98336 1.83318 1.35120 1.87783 1.17317 0.92598 0.91888 0.86626 1.42551 1.64406 1.15532 1.18603 1.20674 1.00974 0.96975 0.96590 1.20986 1.03054 0.91867 1.06889 0.90965 0.86031 0.88956 0.89197 0.76625 0.84844 0.84443 0.76661 0.76923 0.83686 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.24 10.81 55.55 0.60 -20.64 16 2 C 0.07 1.90 5.25 -17.34 -0.09 1.80 16 3 Si 0.91 19.27 29.57 -169.99 -5.03 14.24 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -12.59 9.06 -37.74 -0.34 -12.93 16 8 H 0.08 2.03 7.87 -52.48 -0.41 1.61 16 9 C 0.12 3.26 5.55 -106.85 -0.59 2.67 16 10 C -0.17 -4.36 8.66 -38.84 -0.34 -4.70 16 11 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 12 C -0.26 -5.62 9.97 -39.09 -0.39 -6.01 16 13 C 0.15 3.35 6.26 -83.79 -0.52 2.82 16 14 N -0.66 -11.78 5.28 -10.78 -0.06 -11.84 16 15 C 0.54 9.98 7.50 -12.36 -0.09 9.89 16 16 O -0.51 -11.53 14.05 5.30 0.07 -11.46 16 17 C -0.07 -0.95 5.87 -104.99 -0.62 -1.57 16 18 C -0.14 -1.49 9.53 -39.16 -0.37 -1.87 16 19 C -0.07 -0.66 9.80 -39.64 -0.39 -1.05 16 20 C -0.10 -1.04 6.34 -39.20 -0.25 -1.29 16 21 Cl -0.07 -0.65 27.57 -51.86 -1.43 -2.08 16 22 C 0.22 2.40 6.75 -83.77 -0.57 1.84 16 23 N -0.87 -7.05 9.05 32.41 0.29 -6.75 16 24 C -0.13 -1.66 9.44 -38.97 -0.37 -2.03 16 25 C -0.21 -5.35 8.39 -38.68 -0.32 -5.67 16 26 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 27 H 0.12 3.27 6.18 -52.49 -0.32 2.95 16 28 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 29 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.40 5.42 6.86 -40.82 -0.28 5.14 16 31 H 0.13 1.16 6.41 -52.49 -0.34 0.82 16 32 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.40 2.66 8.84 -40.82 -0.36 2.30 16 34 H 0.40 2.76 7.49 -40.82 -0.31 2.46 16 35 H 0.15 1.93 7.65 -52.48 -0.40 1.53 16 36 H 0.11 2.84 6.44 -52.49 -0.34 2.50 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -31.40 326.25 -9.44 -40.84 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -3.16 Total: 13.44 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -5.65 Total: -20.67 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.84 Total: -39.23 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.43 Total: -2.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.40 -9.44 -40.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313451927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.882 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds