Wall clock time and date at job start Tue Mar 31 2020 11:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86803 * 120.00316 * 2 1 4 4 H 1.48492 * 109.47053 * 239.99521 * 3 2 1 5 5 H 1.48501 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46900 * 119.99377 * 3 2 1 7 7 C 1.39930 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00271 * 168.99422 * 7 2 1 9 9 C 1.41416 * 120.00030 * 348.99709 * 7 2 1 10 10 C 1.40772 * 120.20620 * 331.79822 * 9 7 2 11 11 C 1.37654 * 119.88661 * 180.02562 * 10 9 7 12 12 C 1.38520 * 120.32549 * 359.97438 * 11 10 9 13 13 C 1.39275 * 120.42493 * 0.02752 * 12 11 10 14 14 N 1.39857 * 119.94818 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00057 * 146.35407 * 14 13 12 16 16 O 1.21571 * 120.00140 * 354.85446 * 15 14 13 17 17 C 1.47768 * 119.99999 * 174.86701 * 15 14 13 18 18 C 1.39646 * 120.09875 * 359.97438 * 17 15 14 19 19 C 1.37946 * 120.00863 * 180.23586 * 18 17 15 20 20 C 1.38374 * 120.21420 * 359.49227 * 19 18 17 21 21 Cl 1.73596 * 119.89988 * 180.25222 * 20 19 18 22 22 C 1.39118 * 120.20081 * 0.51402 * 20 19 18 23 23 N 1.39790 * 120.00606 * 179.76414 * 22 20 19 24 24 C 1.38583 * 119.98577 * 359.74115 * 22 20 19 25 25 C 1.38295 * 120.10151 * 0.22745 * 13 12 11 26 26 H 0.97003 * 119.99435 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.05738 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.83464 * 179.97438 * 11 10 9 29 29 H 1.07992 * 119.79069 * 179.97438 * 12 11 10 30 30 H 0.97004 * 120.00292 * 326.34943 * 14 13 12 31 31 H 1.07989 * 119.99881 * 359.96620 * 18 17 15 32 32 H 1.08003 * 119.89280 * 179.72785 * 19 18 17 33 33 H 0.96995 * 119.99553 * 179.97438 * 23 22 20 34 34 H 0.97004 * 119.99898 * 359.97438 * 23 22 20 35 35 H 1.08005 * 120.10312 * 180.02562 * 24 22 20 36 36 H 1.07999 * 120.16395 * 179.75207 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2124 5 1 1.2775 2.7465 -0.0006 6 1 3.0961 1.6963 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0731 -1.2206 -0.1780 9 6 1.3203 -2.4252 0.2348 10 6 0.1510 -2.4366 1.0186 11 6 -0.5128 -3.6215 1.2429 12 6 -0.0362 -4.8037 0.7005 13 6 1.1194 -4.8077 -0.0768 14 7 1.5920 -6.0071 -0.6191 15 6 2.2045 -6.0088 -1.8196 16 8 2.2636 -4.9855 -2.4734 17 6 2.8041 -7.2545 -2.3414 18 6 2.7378 -8.4310 -1.5920 19 6 3.3024 -9.5917 -2.0787 20 6 3.9265 -9.5979 -3.3137 21 17 4.6286 -11.0647 -3.9211 22 6 3.9979 -8.4308 -4.0675 23 7 4.6337 -8.4405 -5.3124 24 6 3.4381 -7.2588 -3.5843 25 6 1.8031 -3.6282 -0.3091 26 1 -0.4849 0.8401 -0.0004 27 1 -0.2246 -1.5174 1.4432 28 1 -1.4096 -3.6294 1.8446 29 1 -0.5636 -5.7284 0.8824 30 1 1.4790 -6.8378 -0.1311 31 1 2.2482 -8.4312 -0.6295 32 1 3.2538 -10.4996 -1.4957 33 1 4.6831 -7.6268 -5.8381 34 1 5.0256 -9.2610 -5.6505 35 1 3.4920 -6.3518 -4.1682 36 1 2.7015 -3.6308 -0.9084 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313451927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:30 Heat of formation + Delta-G solvation = -15.724084 kcal Electronic energy + Delta-G solvation = -22267.508735 eV Core-core repulsion = 18740.835711 eV Total energy + Delta-G solvation = -3526.673024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62333 -40.15198 -38.87661 -37.40699 -36.29034 -35.67086 -34.77072 -32.12469 -31.74281 -30.34844 -29.24647 -27.26060 -25.36153 -23.50360 -23.08635 -22.65169 -21.19507 -19.73101 -18.99599 -18.08978 -17.56260 -17.36101 -16.91078 -16.76839 -16.47836 -16.12508 -15.38523 -15.20891 -14.98738 -14.81202 -14.70567 -14.59790 -13.98696 -13.61886 -13.39867 -13.10183 -12.82731 -12.79687 -12.64482 -12.54863 -12.22459 -11.98329 -11.88870 -11.78222 -11.59540 -11.27154 -10.97993 -10.67646 -9.94118 -9.36208 -8.74696 -8.64916 -8.57065 -6.38139 -0.39133 0.38983 0.92965 1.01675 1.08298 1.36324 1.48502 1.50789 1.84378 2.08838 2.22529 2.70501 2.79923 2.80618 3.62061 3.68873 3.73931 4.11886 4.20842 4.33992 4.47928 4.63399 4.76247 4.83980 5.02668 5.09879 5.11999 5.13000 5.19818 5.27788 5.34455 5.53966 5.76049 5.85495 6.08170 6.11545 6.29931 6.34864 6.59191 6.69264 6.78250 6.94450 7.00692 7.24015 8.37736 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.023463 B = 0.002721 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.104907 B =10287.302840 C =11230.629742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.502 4.502 8 H 0.065 0.935 9 C 0.087 3.913 10 C -0.192 4.192 11 C -0.093 4.093 12 C -0.244 4.244 13 C 0.154 3.846 14 N -0.647 5.647 15 C 0.543 3.457 16 O -0.562 6.562 17 C -0.087 4.087 18 C -0.128 4.128 19 C -0.059 4.059 20 C -0.102 4.102 21 Cl -0.056 7.056 22 C 0.222 3.778 23 N -0.861 5.861 24 C -0.145 4.145 25 C -0.233 4.233 26 H 0.287 0.713 27 H 0.107 0.893 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.422 0.578 31 H 0.159 0.841 32 H 0.170 0.830 33 H 0.411 0.589 34 H 0.409 0.591 35 H 0.129 0.871 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.366 -20.446 -4.922 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.532 4.532 8 H 0.084 0.916 9 C 0.084 3.916 10 C -0.212 4.212 11 C -0.111 4.111 12 C -0.265 4.265 13 C 0.061 3.939 14 N -0.293 5.293 15 C 0.333 3.667 16 O -0.441 6.441 17 C -0.091 4.091 18 C -0.149 4.149 19 C -0.078 4.078 20 C -0.134 4.134 21 Cl -0.028 7.028 22 C 0.114 3.886 23 N -0.402 5.402 24 C -0.169 4.169 25 C -0.254 4.254 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.143 0.857 29 H 0.153 0.847 30 H 0.262 0.738 31 H 0.176 0.824 32 H 0.188 0.812 33 H 0.241 0.759 34 H 0.240 0.760 35 H 0.147 0.853 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.290 -19.749 -5.455 21.432 hybrid contribution 0.477 0.703 -0.472 0.972 sum 6.767 -19.045 -5.927 21.063 Atomic orbital electron populations 1.69851 1.08699 1.30353 1.36925 1.26730 0.95724 1.04330 0.91351 0.85220 0.78722 0.75617 0.79888 1.19076 1.18687 1.18116 1.19737 0.95845 0.92037 1.45610 0.91649 1.17844 0.92553 0.92387 0.88790 1.21392 0.99402 0.97538 1.02846 1.20871 0.98883 0.92174 0.99222 1.20518 0.98023 0.98805 1.09126 1.17497 0.94237 0.85214 0.96916 1.43193 1.57211 1.09601 1.19316 1.18928 0.78081 0.88912 0.80816 1.90829 1.58831 1.35758 1.58658 1.19593 1.00673 0.92730 0.96108 1.21255 1.02164 0.90464 1.01041 1.21065 0.94285 0.99458 0.92959 1.20721 1.07809 0.87151 0.97679 1.98350 1.82957 1.33827 1.87623 1.17282 0.92411 0.91419 0.87463 1.42552 1.63565 1.16322 1.17776 1.20594 1.02192 0.97430 0.96655 1.20945 1.03350 0.93297 1.07846 0.90204 0.87534 0.85687 0.84651 0.73817 0.82371 0.81237 0.75895 0.75988 0.85312 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.67 10.81 21.82 0.24 -45.44 16 2 C 0.03 1.72 5.25 85.25 0.45 2.17 16 3 Si 0.99 40.72 29.57 68.60 2.03 42.75 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.50 -29.38 9.06 23.46 0.21 -29.17 16 8 H 0.07 3.77 7.87 -2.91 -0.02 3.75 16 9 C 0.09 5.04 5.55 -21.31 -0.12 4.93 16 10 C -0.19 -10.37 8.66 22.75 0.20 -10.18 16 11 C -0.09 -4.21 10.02 22.20 0.22 -3.99 16 12 C -0.24 -10.11 9.97 22.59 0.23 -9.89 16 13 C 0.15 6.95 6.26 38.12 0.24 7.19 16 14 N -0.65 -22.51 5.28 -306.30 -1.62 -24.13 16 15 C 0.54 20.26 7.50 86.76 0.65 20.92 16 16 O -0.56 -27.11 14.05 -3.94 -0.06 -27.16 16 17 C -0.09 -2.38 5.87 -20.11 -0.12 -2.50 16 18 C -0.13 -2.43 9.53 22.54 0.21 -2.22 16 19 C -0.06 -0.93 9.80 22.23 0.22 -0.71 16 20 C -0.10 -1.81 6.34 22.51 0.14 -1.67 16 21 Cl -0.06 -0.82 27.57 -2.72 -0.07 -0.89 16 22 C 0.22 4.50 6.75 38.17 0.26 4.76 16 23 N -0.86 -12.82 9.05 -51.37 -0.46 -13.29 16 24 C -0.14 -3.77 9.44 22.66 0.21 -3.56 16 25 C -0.23 -12.66 8.39 22.85 0.19 -12.47 16 26 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 27 H 0.11 5.98 6.18 -2.91 -0.02 5.97 16 28 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 29 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.42 10.28 6.86 -92.71 -0.64 9.65 16 31 H 0.16 2.11 6.41 -2.92 -0.02 2.09 16 32 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.41 5.15 8.84 -92.71 -0.82 4.33 16 34 H 0.41 4.84 7.49 -92.71 -0.69 4.15 16 35 H 0.13 3.69 7.65 -2.91 -0.02 3.67 16 36 H 0.08 4.86 6.44 -2.91 -0.02 4.84 16 Total: -1.00 -73.29 326.25 2.28 -71.01 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: -0.97 Total: 33.54 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 3.20 Total: -36.39 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -1.85 Total: -82.85 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.06 Total: -27.16 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.07 Total: -0.89 kcal Total: -73.29 2.28 -71.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313451927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.287 kcal (2) G-P(sol) polarization free energy of solvation -73.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds