Wall clock time and date at job start Tue Mar 31 2020 11:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29028 * 124.91325 * 2 1 4 4 C 1.31789 * 117.11891 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.74540 * 179.97438 * 4 3 2 6 6 C 1.33636 * 114.50274 * 359.97438 * 4 3 2 7 7 S 1.76201 * 126.03756 * 180.02562 * 6 4 3 8 8 O 1.42100 * 106.39747 * 203.53941 * 7 6 4 9 9 O 1.42098 * 106.39818 * 336.45738 * 7 6 4 10 10 N 1.65589 * 107.21889 * 89.99978 * 7 6 4 11 11 C 1.46505 * 120.00471 * 64.99885 * 10 7 6 12 12 C 1.52995 * 109.47395 * 164.43484 * 11 10 7 13 13 C 1.50694 * 115.55192 * 65.11466 * 12 11 10 14 14 H 1.07997 * 120.00696 * 264.73501 * 13 12 11 15 15 C 1.37887 * 119.99570 * 84.73472 * 13 12 11 16 16 N 1.31510 * 120.00019 * 352.55155 * 15 13 12 17 17 Si 1.86798 * 119.99773 * 172.54954 * 15 13 12 18 18 H 1.48501 * 109.47234 * 59.99763 * 17 15 13 19 19 H 1.48501 * 109.47083 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47386 * 300.00097 * 17 15 13 21 21 C 1.52998 * 117.49988 * 279.44766 * 12 11 10 22 22 C 1.53007 * 117.50063 * 210.79051 * 12 11 10 23 23 S 1.70970 * 124.91675 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.46863 * 90.02266 * 1 2 3 25 25 H 1.08996 * 109.47122 * 210.02783 * 1 2 3 26 26 H 1.08997 * 109.47027 * 330.03087 * 1 2 3 27 27 H 1.09001 * 109.47189 * 90.02293 * 5 4 3 28 28 H 1.09004 * 109.46600 * 210.02357 * 5 4 3 29 29 H 1.09000 * 109.47228 * 330.01804 * 5 4 3 30 30 H 0.97009 * 120.00197 * 245.00094 * 10 7 6 31 31 H 1.08996 * 109.47116 * 284.43600 * 11 10 7 32 32 H 1.09006 * 109.46860 * 44.43554 * 11 10 7 33 33 H 0.96997 * 119.99636 * 185.02886 * 16 15 13 34 34 H 1.09007 * 117.50159 * 0.02562 * 21 12 11 35 35 H 1.09000 * 117.50228 * 145.01827 * 21 12 11 36 36 H 1.08996 * 117.49696 * 214.98062 * 22 12 11 37 37 H 1.09000 * 117.49247 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0246 -0.0012 6 6 3.9354 -0.4006 -0.0004 7 16 5.5981 -0.9838 -0.0004 8 8 5.5630 -2.2960 -0.5448 9 8 6.3903 0.0626 -0.5450 10 7 6.0607 -1.1460 1.5813 11 6 5.4014 -2.1332 2.4399 12 6 6.2432 -2.3586 3.6974 13 6 6.3736 -1.1696 4.6140 14 1 7.2311 -0.5178 4.5345 15 6 5.3981 -0.9139 5.5543 16 7 4.2864 -1.6164 5.5563 17 14 5.6558 0.4304 6.8255 18 1 5.8413 1.7333 6.1375 19 1 4.4685 0.5053 7.7144 20 1 6.8621 0.1219 7.6347 21 6 7.4454 -3.2981 3.5837 22 6 6.1932 -3.7454 4.3419 23 16 2.4856 -1.4019 0.0006 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5133 27 1 4.7677 2.3006 1.0264 28 1 5.4428 1.7222 -0.5157 29 1 4.0902 2.8792 -0.5147 30 1 6.7682 -0.5872 1.9395 31 1 4.4150 -1.7667 2.7239 32 1 5.2977 -3.0737 1.8987 33 1 3.5702 -1.3892 6.1698 34 1 7.6370 -3.7553 2.6129 35 1 8.3305 -3.0564 4.1722 36 1 6.2549 -3.7977 5.4288 37 1 5.5602 -4.4970 3.8701 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331948356.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:12 Heat of formation + Delta-G solvation = -32.954368 kcal Electronic energy + Delta-G solvation = -22627.791993 eV Core-core repulsion = 19237.859466 eV Total energy + Delta-G solvation = -3389.932528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09368 -38.84436 -38.35166 -37.07297 -34.93299 -34.27231 -33.92400 -30.33220 -28.98782 -27.82940 -26.69904 -23.97218 -22.89433 -22.06842 -21.21905 -20.12593 -19.14942 -18.59122 -18.17013 -17.60495 -16.90363 -16.61833 -16.35048 -15.95411 -15.54923 -15.30142 -14.59107 -14.58173 -14.34063 -14.12276 -13.90140 -13.79244 -13.57337 -13.32049 -13.14153 -13.06624 -12.95288 -12.84122 -12.81354 -12.69204 -12.35258 -12.22982 -11.99291 -11.39678 -10.95451 -10.88023 -10.84091 -10.49516 -10.27286 -9.96940 -9.91514 -8.08136 -6.18579 -0.94454 -0.61920 0.10785 0.44066 1.39411 1.43048 1.45824 1.50649 2.00903 2.43625 2.59199 2.88860 3.19615 3.34368 3.54226 3.77495 3.99160 4.16895 4.43112 4.53643 4.56688 4.58692 4.61883 4.64941 4.66241 4.79490 4.80649 5.02243 5.05283 5.25532 5.28706 5.30438 5.64932 5.71271 5.80437 6.19734 6.39169 6.42253 6.86811 7.49507 8.98932 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.005700 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.830142 B = 4911.459464 C = 5613.893050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.086 3.914 3 N -0.516 5.516 4 C 0.213 3.787 5 C -0.135 4.135 6 C -0.870 4.870 7 S 2.742 3.258 8 O -0.980 6.980 9 O -0.966 6.966 10 N -1.091 6.091 11 C 0.170 3.830 12 C 0.012 3.988 13 C -0.504 4.504 14 H 0.059 0.941 15 C 0.033 3.967 16 N -0.900 5.900 17 Si 0.939 3.061 18 H -0.273 1.273 19 H -0.290 1.290 20 H -0.274 1.274 21 C -0.187 4.187 22 C -0.157 4.157 23 S 0.235 5.765 24 H 0.119 0.881 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.425 0.575 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.259 0.741 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 2.385 -10.695 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.190 4.190 3 N -0.233 5.233 4 C 0.073 3.927 5 C -0.194 4.194 6 C -1.075 5.075 7 S 2.828 3.172 8 O -0.970 6.970 9 O -0.956 6.956 10 N -0.853 5.853 11 C 0.044 3.956 12 C 0.010 3.990 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.168 4.168 16 N -0.537 5.537 17 Si 0.766 3.234 18 H -0.198 1.198 19 H -0.216 1.216 20 H -0.200 1.200 21 C -0.225 4.225 22 C -0.196 4.196 23 S 0.493 5.507 24 H 0.137 0.863 25 H 0.126 0.874 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.135 0.865 29 H 0.120 0.880 30 H 0.262 0.738 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.857 1.397 -11.362 13.344 hybrid contribution 0.202 1.775 1.518 2.345 sum -6.655 3.172 -9.844 12.298 Atomic orbital electron populations 1.20889 0.81225 1.06273 1.06305 1.28445 1.04176 0.91531 0.94833 1.66386 1.04275 1.32529 1.20101 1.20379 0.91054 0.93000 0.88270 1.21340 0.97642 0.94930 1.05456 1.36802 1.28865 1.06865 1.34933 1.00288 0.71907 0.72747 0.72294 1.93536 1.86959 1.38947 1.77594 1.93448 1.67272 1.57374 1.77496 1.55083 1.49908 1.50531 1.29743 1.20669 0.95520 0.88955 0.90442 1.19007 0.95805 0.90524 0.93678 1.20590 1.06978 1.10691 1.15957 0.92294 1.25548 0.95213 0.97672 0.98380 1.70045 1.05279 1.40186 1.38219 0.85911 0.77315 0.80352 0.79799 1.19841 1.21595 1.19981 1.23031 0.92686 1.05954 1.00790 1.22497 1.00331 0.98914 0.97869 1.83727 0.92404 1.09769 1.64782 0.86289 0.87441 0.88027 0.88607 0.86460 0.87993 0.73818 0.93215 0.92503 0.93167 0.89416 0.90003 0.91797 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 10.46 71.24 0.75 -0.54 16 2 C 0.09 2.19 7.39 88.52 0.65 2.84 16 3 N -0.52 -15.67 10.53 -179.40 -1.89 -17.56 16 4 C 0.21 6.81 6.74 41.52 0.28 7.09 16 5 C -0.14 -3.75 9.95 71.24 0.71 -3.04 16 6 C -0.87 -28.83 6.62 66.78 0.44 -28.38 16 7 S 2.74 95.30 5.78 -56.49 -0.33 94.98 16 8 O -0.98 -37.75 17.42 -128.00 -2.23 -39.98 16 9 O -0.97 -33.94 14.84 -128.00 -1.90 -35.84 16 10 N -1.09 -40.07 5.95 -187.49 -1.12 -41.18 16 11 C 0.17 7.08 6.05 86.38 0.52 7.60 16 12 C 0.01 0.54 1.43 -52.93 -0.08 0.46 16 13 C -0.50 -25.08 8.47 25.60 0.22 -24.86 16 14 H 0.06 2.89 7.82 -2.91 -0.02 2.86 16 15 C 0.03 1.69 5.38 84.66 0.46 2.15 16 16 N -0.90 -47.86 12.97 21.45 0.28 -47.58 16 17 Si 0.94 41.17 29.55 68.60 2.03 43.20 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C -0.19 -7.50 9.96 30.62 0.30 -7.19 16 22 C -0.16 -6.90 9.49 30.62 0.29 -6.60 16 23 S 0.24 6.69 23.11 -56.49 -1.31 5.39 16 24 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.12 3.36 5.02 -2.39 -0.01 3.35 16 29 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.43 15.02 8.38 -96.74 -0.81 14.21 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 2.24 7.69 -2.38 -0.02 2.22 16 33 H 0.26 13.38 8.32 -92.71 -0.77 12.61 16 34 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 35 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -63.01 342.06 -1.62 -64.63 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.29 Total: 24.43 kcal Atomic # 6 Polarization: -55.03 SS G_CDS: 4.55 Total: -50.48 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -2.73 Total: -106.32 kcal Atomic # 8 Polarization: -71.68 SS G_CDS: -4.13 Total: -75.81 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: 102.00 SS G_CDS: -1.63 Total: 100.36 kcal Total: -63.01 -1.62 -64.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331948356.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.675 kcal (2) G-P(sol) polarization free energy of solvation -63.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds