Wall clock time and date at job start Tue Mar 31 2020 12:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99998 * 2 1 4 4 H 1.48501 * 109.47026 * 269.99431 * 3 2 1 5 5 H 1.48492 * 109.47167 * 29.99949 * 3 2 1 6 6 H 1.48503 * 109.46916 * 150.00137 * 3 2 1 7 7 C 1.37878 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99741 * 359.72752 * 7 2 1 10 10 O 1.42894 * 112.94461 * 50.60785 * 9 7 2 11 11 C 1.53943 * 113.74006 * 279.01316 * 9 7 2 12 12 N 1.47812 * 86.03761 * 222.08649 * 11 9 7 13 13 C 1.34778 * 134.45906 * 204.64501 * 12 11 9 14 14 O 1.21513 * 119.99848 * 174.35234 * 13 12 11 15 15 C 1.48144 * 119.99627 * 354.35431 * 13 12 11 16 16 C 1.39836 * 120.92711 * 353.51026 * 15 13 12 17 17 C 1.38126 * 119.00551 * 180.02562 * 16 15 13 18 18 N 1.31827 * 120.89895 * 0.02562 * 17 16 15 19 19 C 1.31803 * 122.04771 * 359.97438 * 18 17 16 20 20 C 1.38170 * 120.89106 * 359.71727 * 19 18 17 21 21 C 1.50708 * 120.49712 * 180.29080 * 20 19 18 22 22 F 1.39894 * 109.47361 * 0.28922 * 21 20 19 23 23 F 1.39898 * 109.47010 * 120.29081 * 21 20 19 24 24 F 1.39898 * 109.47071 * 240.28737 * 21 20 19 25 25 C 1.47585 * 91.04920 * 24.55052 * 12 11 9 26 26 H 0.97007 * 120.00090 * 0.02562 * 1 2 3 27 27 H 0.96697 * 114.00408 * 309.66451 * 10 9 7 28 28 H 1.08996 * 113.77305 * 336.35226 * 11 9 7 29 29 H 1.08999 * 113.76979 * 107.75048 * 11 9 7 30 30 H 1.08001 * 120.49674 * 0.02562 * 16 15 13 31 31 H 1.08001 * 119.55078 * 180.02562 * 17 16 15 32 32 H 1.07996 * 119.55481 * 180.02562 * 19 18 17 33 33 H 1.08996 * 113.76723 * 221.15144 * 25 12 11 34 34 H 1.09005 * 113.86703 * 89.76976 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0073 10 8 0.2449 -2.5669 -1.0053 11 6 0.7555 -2.9216 1.4023 12 7 1.1914 -4.2845 1.0318 13 6 0.8420 -5.5262 1.4223 14 8 1.3113 -6.4950 0.8586 15 6 -0.1143 -5.7098 2.5388 16 6 -0.5625 -4.6176 3.2882 17 6 -1.4538 -4.8344 4.3209 18 7 -1.8804 -6.0494 4.6031 19 6 -1.4834 -7.1058 3.9221 20 6 -0.5978 -6.9793 2.8691 21 6 -0.1548 -8.1924 2.0924 22 9 -0.7754 -9.3325 2.6140 23 9 -0.5114 -8.0412 0.7481 24 9 1.2337 -8.3296 2.1939 25 6 2.1607 -3.7399 0.0612 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3471 -1.8026 -1.0233 28 1 1.3264 -2.4854 2.2220 29 1 -0.3221 -2.8243 1.5339 30 1 -0.2169 -3.6195 3.0629 31 1 -1.8060 -3.9972 4.9051 32 1 -1.8591 -8.0829 4.1877 33 1 2.2028 -4.2947 -0.8760 34 1 3.1460 -3.5442 0.4843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331990278.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:04 Heat of formation + Delta-G solvation = -145.277613 kcal Electronic energy + Delta-G solvation = -27097.594588 eV Core-core repulsion = 22582.737796 eV Total energy + Delta-G solvation = -4514.856792 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.89081 -47.47743 -47.20670 -40.79931 -39.37160 -37.51898 -34.20710 -33.16846 -32.35704 -32.17955 -28.92383 -26.53841 -25.74852 -25.54403 -24.29730 -22.52934 -20.61578 -19.30293 -18.39607 -18.17440 -17.94063 -17.68440 -17.05287 -16.68257 -15.67112 -15.35013 -15.13197 -14.78149 -14.67497 -14.28847 -14.18799 -14.05033 -13.96626 -13.75301 -13.46489 -13.41011 -13.18025 -13.01478 -12.70460 -12.56267 -12.16593 -11.79466 -11.69827 -11.20467 -11.14650 -10.62067 -10.44360 -10.25666 -10.18601 -9.71480 -9.61376 -9.43717 -8.88903 -8.58089 -8.07934 -6.51435 -4.62264 0.33663 0.67200 2.72170 2.94775 3.07726 3.09773 3.16897 3.19832 3.58576 3.77920 4.09145 4.10437 4.15837 4.36747 4.47445 4.63063 4.72883 4.92235 4.97671 5.30743 5.40917 5.44596 5.64805 5.75056 5.96668 6.16081 6.18672 6.23607 6.38361 6.46644 6.91828 7.49932 7.51160 7.67358 8.13219 8.36448 8.41849 9.09444 9.29004 10.55435 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.022811 B = 0.004061 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.189147 B = 6893.666061 C = 7608.887525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.242 3.758 10 O -0.570 6.570 11 C 0.065 3.935 12 N -0.618 5.618 13 C 0.557 3.443 14 O -0.532 6.532 15 C -0.023 4.023 16 C -0.152 4.152 17 C 0.126 3.874 18 N -0.472 5.472 19 C 0.141 3.859 20 C -0.198 4.198 21 C 0.524 3.476 22 F -0.186 7.186 23 F -0.164 7.164 24 F -0.160 7.160 25 C 0.115 3.885 26 H 0.274 0.726 27 H 0.393 0.607 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.076 0.924 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 -7.520 8.390 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.577 4.577 8 H 0.091 0.909 9 C 0.200 3.800 10 O -0.382 6.382 11 C -0.057 4.057 12 N -0.350 5.350 13 C 0.344 3.656 14 O -0.411 6.411 15 C -0.034 4.034 16 C -0.172 4.172 17 C -0.030 4.030 18 N -0.181 5.181 19 C -0.016 4.016 20 C -0.202 4.202 21 C 0.468 3.532 22 F -0.167 7.167 23 F -0.145 7.145 24 F -0.141 7.141 25 C -0.006 4.006 26 H 0.084 0.916 27 H 0.248 0.752 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.184 0.816 31 H 0.190 0.810 32 H 0.191 0.809 33 H 0.094 0.906 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.054 -8.782 8.666 12.711 hybrid contribution 0.687 1.406 -0.520 1.649 sum -2.368 -7.376 8.146 11.242 Atomic orbital electron populations 1.69395 1.06179 1.28369 1.49773 1.25064 0.95035 0.99924 0.92889 0.86323 0.79760 0.81838 0.78597 1.20189 1.20881 1.19517 1.21475 0.93998 0.89724 1.52525 0.90881 1.19818 0.85655 0.91306 0.83235 1.86085 1.47046 1.49756 1.55335 1.24630 1.00274 0.77191 1.03576 1.50091 1.39738 1.04229 1.40966 1.17678 0.82135 0.82939 0.82825 1.90824 1.56204 1.38369 1.55705 1.20380 0.95067 0.92472 0.95461 1.23130 0.97626 1.00916 0.95502 1.23110 0.91589 0.94790 0.93560 1.67751 1.23498 0.99223 1.27608 1.22697 0.91018 0.98909 0.88943 1.21230 1.04004 0.93579 1.01398 1.17685 0.75880 0.81527 0.78068 1.93133 1.82940 1.53944 1.86712 1.93245 1.91529 1.95489 1.34229 1.93250 1.29098 1.95935 1.95815 1.23562 0.93170 0.92600 0.91247 0.91551 0.75244 0.89200 0.90489 0.81591 0.80988 0.80900 0.90572 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.16 11.21 55.43 0.62 -20.54 16 2 C 0.07 1.72 5.40 -17.82 -0.10 1.62 16 3 Si 0.91 18.33 29.54 -169.99 -5.02 13.31 16 4 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.54 -12.55 8.61 -34.44 -0.30 -12.84 16 8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.24 5.35 1.40 -90.84 -0.13 5.22 16 10 O -0.57 -13.84 13.49 -35.23 -0.48 -14.32 16 11 C 0.07 1.24 5.66 -2.84 -0.02 1.23 16 12 N -0.62 -12.17 3.60 -179.11 -0.65 -12.81 16 13 C 0.56 11.00 7.82 -12.19 -0.10 10.90 16 14 O -0.53 -11.72 12.39 5.35 0.07 -11.65 16 15 C -0.02 -0.37 5.88 -104.65 -0.62 -0.99 16 16 C -0.15 -2.07 9.17 -39.03 -0.36 -2.43 16 17 C 0.13 1.46 11.17 -17.59 -0.20 1.26 16 18 N -0.47 -5.94 10.34 -13.30 -0.14 -6.08 16 19 C 0.14 1.78 10.59 -17.59 -0.19 1.59 16 20 C -0.20 -2.99 5.41 -104.06 -0.56 -3.55 16 21 C 0.52 8.43 2.78 36.01 0.10 8.53 16 22 F -0.19 -2.52 16.01 2.25 0.04 -2.48 16 23 F -0.16 -3.00 15.37 2.25 0.03 -2.97 16 24 F -0.16 -2.85 14.90 2.25 0.03 -2.82 16 25 C 0.12 2.34 8.23 -2.96 -0.02 2.32 16 26 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 27 H 0.39 9.58 6.61 45.56 0.30 9.88 16 28 H 0.09 1.58 8.03 -51.93 -0.42 1.16 16 29 H 0.08 1.43 6.89 -51.93 -0.36 1.08 16 30 H 0.17 2.20 4.26 -52.49 -0.22 1.98 16 31 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.17 1.70 7.17 -52.49 -0.38 1.32 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 LS Contribution 303.65 15.07 4.58 4.58 Total: -1.00 -27.36 303.65 -5.27 -32.63 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -1.88 Total: 10.30 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: -2.47 Total: 12.86 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.16 Total: -39.43 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.41 Total: -25.97 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 0.10 Total: -8.27 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.36 -5.27 -32.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331990278.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.644 kcal (2) G-P(sol) polarization free energy of solvation -27.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds