Wall clock time and date at job start Tue Mar 31 2020 12:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99998 * 2 1 4 4 H 1.48501 * 109.47026 * 269.99431 * 3 2 1 5 5 H 1.48492 * 109.47167 * 29.99949 * 3 2 1 6 6 H 1.48503 * 109.46916 * 150.00137 * 3 2 1 7 7 C 1.37878 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99741 * 359.72752 * 7 2 1 10 10 O 1.42894 * 112.94461 * 50.60785 * 9 7 2 11 11 C 1.53943 * 113.74006 * 279.01316 * 9 7 2 12 12 N 1.47812 * 86.03761 * 222.08649 * 11 9 7 13 13 C 1.34778 * 134.45906 * 204.64501 * 12 11 9 14 14 O 1.21513 * 119.99848 * 174.35234 * 13 12 11 15 15 C 1.48144 * 119.99627 * 354.35431 * 13 12 11 16 16 C 1.39836 * 120.92711 * 353.51026 * 15 13 12 17 17 C 1.38126 * 119.00551 * 180.02562 * 16 15 13 18 18 N 1.31827 * 120.89895 * 0.02562 * 17 16 15 19 19 C 1.31803 * 122.04771 * 359.97438 * 18 17 16 20 20 C 1.38170 * 120.89106 * 359.71727 * 19 18 17 21 21 C 1.50708 * 120.49712 * 180.29080 * 20 19 18 22 22 F 1.39894 * 109.47361 * 0.28922 * 21 20 19 23 23 F 1.39898 * 109.47010 * 120.29081 * 21 20 19 24 24 F 1.39898 * 109.47071 * 240.28737 * 21 20 19 25 25 C 1.47585 * 91.04920 * 24.55052 * 12 11 9 26 26 H 0.97007 * 120.00090 * 0.02562 * 1 2 3 27 27 H 0.96697 * 114.00408 * 309.66451 * 10 9 7 28 28 H 1.08996 * 113.77305 * 336.35226 * 11 9 7 29 29 H 1.08999 * 113.76979 * 107.75048 * 11 9 7 30 30 H 1.08001 * 120.49674 * 0.02562 * 16 15 13 31 31 H 1.08001 * 119.55078 * 180.02562 * 17 16 15 32 32 H 1.07996 * 119.55481 * 180.02562 * 19 18 17 33 33 H 1.08996 * 113.76723 * 221.15144 * 25 12 11 34 34 H 1.09005 * 113.86703 * 89.76976 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0073 10 8 0.2449 -2.5669 -1.0053 11 6 0.7555 -2.9216 1.4023 12 7 1.1914 -4.2845 1.0318 13 6 0.8420 -5.5262 1.4223 14 8 1.3113 -6.4950 0.8586 15 6 -0.1143 -5.7098 2.5388 16 6 -0.5625 -4.6176 3.2882 17 6 -1.4538 -4.8344 4.3209 18 7 -1.8804 -6.0494 4.6031 19 6 -1.4834 -7.1058 3.9221 20 6 -0.5978 -6.9793 2.8691 21 6 -0.1548 -8.1924 2.0924 22 9 -0.7754 -9.3325 2.6140 23 9 -0.5114 -8.0412 0.7481 24 9 1.2337 -8.3296 2.1939 25 6 2.1607 -3.7399 0.0612 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3471 -1.8026 -1.0233 28 1 1.3264 -2.4854 2.2220 29 1 -0.3221 -2.8243 1.5339 30 1 -0.2169 -3.6195 3.0629 31 1 -1.8060 -3.9972 4.9051 32 1 -1.8591 -8.0829 4.1877 33 1 2.2028 -4.2947 -0.8760 34 1 3.1460 -3.5442 0.4843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331990278.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:04 Heat of formation + Delta-G solvation = -163.991106 kcal Electronic energy + Delta-G solvation = -27098.406066 eV Core-core repulsion = 22582.737796 eV Total energy + Delta-G solvation = -4515.668270 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.14994 -48.70428 -48.54946 -42.02769 -40.78075 -39.09864 -35.94318 -34.32927 -34.15095 -33.28648 -30.49344 -27.88574 -27.30205 -27.00960 -25.54558 -23.68427 -22.13349 -20.76267 -19.66915 -19.46564 -19.36756 -19.15258 -18.48970 -17.95859 -17.15619 -16.80869 -16.62216 -16.08941 -16.03201 -15.63620 -15.54286 -15.33548 -15.19370 -15.01738 -14.88461 -14.74677 -14.63479 -14.41407 -14.08721 -13.96373 -13.79638 -13.42393 -13.05975 -12.80547 -12.70254 -12.22863 -12.22105 -11.69587 -11.35272 -11.16701 -10.89800 -10.64939 -10.63007 -10.24447 -9.69183 -8.26409 -6.42801 -0.81360 -0.35961 1.48285 1.48798 1.53707 1.60525 1.63263 1.68024 2.40980 2.42980 2.58751 2.89600 2.97202 3.06650 3.21858 3.36019 3.44790 3.70149 3.77189 3.95466 4.06809 4.28957 4.40421 4.44628 4.56406 4.65581 4.70333 4.82407 4.87269 5.19863 5.22921 5.73519 5.91802 6.50489 6.60330 6.63049 6.83599 7.30435 7.43724 8.79760 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.022811 B = 0.004061 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.189147 B = 6893.666061 C = 7608.887525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.039 3.961 3 Si 0.964 3.036 4 H -0.283 1.283 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.220 3.780 10 O -0.587 6.587 11 C 0.084 3.916 12 N -0.621 5.621 13 C 0.549 3.451 14 O -0.564 6.564 15 C -0.046 4.046 16 C -0.150 4.150 17 C 0.144 3.856 18 N -0.473 5.473 19 C 0.154 3.846 20 C -0.210 4.210 21 C 0.521 3.479 22 F -0.170 7.170 23 F -0.182 7.182 24 F -0.174 7.174 25 C 0.114 3.886 26 H 0.276 0.724 27 H 0.389 0.611 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.170 0.830 31 H 0.215 0.785 32 H 0.201 0.799 33 H 0.060 0.940 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.554 -6.807 10.544 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.162 4.162 3 Si 0.790 3.210 4 H -0.209 1.209 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.593 4.593 8 H 0.091 0.909 9 C 0.179 3.821 10 O -0.399 6.399 11 C -0.038 4.038 12 N -0.353 5.353 13 C 0.339 3.661 14 O -0.445 6.445 15 C -0.057 4.057 16 C -0.169 4.169 17 C -0.013 4.013 18 N -0.181 5.181 19 C -0.002 4.002 20 C -0.214 4.214 21 C 0.466 3.534 22 F -0.152 7.152 23 F -0.163 7.163 24 F -0.155 7.155 25 C -0.008 4.008 26 H 0.086 0.914 27 H 0.243 0.757 28 H 0.126 0.874 29 H 0.100 0.900 30 H 0.187 0.813 31 H 0.231 0.769 32 H 0.218 0.782 33 H 0.078 0.922 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.800 -8.080 10.835 14.040 hybrid contribution 0.888 1.156 -1.192 1.883 sum -2.912 -6.924 9.643 12.223 Atomic orbital electron populations 1.69449 1.06948 1.28974 1.49937 1.25651 0.95702 1.02254 0.92611 0.85450 0.78863 0.78699 0.77986 1.20933 1.20554 1.19056 1.21675 0.94172 0.90498 1.52987 0.90901 1.20110 0.85844 0.91706 0.84453 1.86075 1.47537 1.49608 1.56683 1.24463 1.00738 0.76434 1.02140 1.50088 1.39649 1.04673 1.40867 1.18234 0.82296 0.82277 0.83326 1.90795 1.57495 1.39160 1.57057 1.20220 0.95843 0.94153 0.95492 1.23202 0.97924 1.00107 0.95712 1.23746 0.89595 0.95582 0.92341 1.67909 1.23333 0.99544 1.27344 1.23111 0.89468 1.00219 0.87429 1.21231 1.05304 0.92460 1.02447 1.17852 0.75356 0.82618 0.77555 1.93153 1.82493 1.53209 1.86308 1.93201 1.91610 1.95676 1.35855 1.93213 1.30419 1.96087 1.95820 1.23578 0.94089 0.91850 0.91244 0.91386 0.75717 0.87358 0.90025 0.81297 0.76859 0.78190 0.92152 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -42.45 11.21 21.45 0.24 -42.21 16 2 C 0.04 1.78 5.40 84.65 0.46 2.24 16 3 Si 0.96 36.81 29.54 68.60 2.03 38.84 16 4 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.56 -25.58 8.61 25.60 0.22 -25.36 16 8 H 0.07 3.28 7.81 -2.92 -0.02 3.25 16 9 C 0.22 9.74 1.40 -10.88 -0.02 9.72 16 10 O -0.59 -28.96 13.49 -148.98 -2.01 -30.97 16 11 C 0.08 3.11 5.66 86.44 0.49 3.60 16 12 N -0.62 -24.42 3.60 -842.72 -3.04 -27.45 16 13 C 0.55 21.85 7.82 86.87 0.68 22.53 16 14 O -0.56 -25.49 12.39 -3.76 -0.05 -25.54 16 15 C -0.05 -1.48 5.88 -19.88 -0.12 -1.59 16 16 C -0.15 -3.73 9.17 22.63 0.21 -3.52 16 17 C 0.14 2.77 11.17 84.67 0.95 3.72 16 18 N -0.47 -10.17 10.34 -196.01 -2.03 -12.20 16 19 C 0.15 3.45 10.59 84.68 0.90 4.35 16 20 C -0.21 -6.10 5.41 -19.50 -0.11 -6.20 16 21 C 0.52 16.68 2.78 71.24 0.20 16.88 16 22 F -0.17 -4.42 16.01 44.97 0.72 -3.70 16 23 F -0.18 -6.81 15.37 44.97 0.69 -6.12 16 24 F -0.17 -6.30 14.90 44.97 0.67 -5.63 16 25 C 0.11 4.67 8.23 86.48 0.71 5.38 16 26 H 0.28 12.23 8.31 -92.70 -0.77 11.46 16 27 H 0.39 19.26 6.61 -74.06 -0.49 18.77 16 28 H 0.11 3.60 8.03 -2.39 -0.02 3.58 16 29 H 0.08 2.94 6.89 -2.39 -0.02 2.92 16 30 H 0.17 4.08 4.26 -2.91 -0.01 4.06 16 31 H 0.21 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.20 3.26 7.17 -2.91 -0.02 3.24 16 33 H 0.06 2.61 8.14 -2.39 -0.02 2.60 16 34 H 0.11 4.04 8.09 -2.38 -0.02 4.02 16 Total: -1.00 -58.92 303.65 2.51 -56.41 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.71 Total: 26.83 kcal Atomic # 6 Polarization: 27.17 SS G_CDS: 4.57 Total: 31.74 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -4.82 Total: -81.86 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -2.06 Total: -56.51 kcal Atomic # 9 Polarization: -17.53 SS G_CDS: 2.08 Total: -15.45 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Total: -58.92 2.51 -56.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331990278.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.579 kcal (2) G-P(sol) polarization free energy of solvation -58.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds