Wall clock time and date at job start Tue Mar 31 2020 12:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00185 * 2 1 4 4 H 1.48498 * 109.46773 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47248 * 300.00605 * 3 2 1 6 6 H 1.48504 * 109.46795 * 60.00585 * 3 2 1 7 7 C 1.37874 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00499 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99845 * 359.97438 * 7 2 1 10 10 O 1.42902 * 113.41442 * 313.20044 * 9 7 2 11 11 C 1.53504 * 114.20523 * 180.02562 * 9 7 2 12 12 N 1.47066 * 88.04678 * 220.37340 * 11 9 7 13 13 C 1.34779 * 136.05579 * 207.05024 * 12 11 9 14 14 O 1.21512 * 120.00066 * 0.02562 * 13 12 11 15 15 C 1.48168 * 119.99839 * 180.02562 * 13 12 11 16 16 N 1.32749 * 119.72503 * 0.02562 * 15 13 12 17 17 C 1.31494 * 121.64350 * 179.97438 * 16 15 13 18 18 C 1.38601 * 120.90062 * 0.02797 * 17 16 15 19 19 C 1.38582 * 119.35431 * 359.97303 * 18 17 16 20 20 C 1.38640 * 118.48867 * 359.75237 * 19 18 17 21 21 C 1.50694 * 120.47214 * 180.26647 * 20 19 18 22 22 F 1.39899 * 109.47174 * 0.25099 * 21 20 19 23 23 F 1.39896 * 109.47200 * 120.25087 * 21 20 19 24 24 F 1.39906 * 109.46825 * 240.25220 * 21 20 19 25 25 C 1.47064 * 87.88659 * 27.09306 * 12 11 9 26 26 H 0.97004 * 119.99468 * 359.97438 * 1 2 3 27 27 H 0.96697 * 113.99512 * 46.80894 * 10 9 7 28 28 H 1.09002 * 113.46865 * 105.56435 * 11 9 7 29 29 H 1.08999 * 113.46581 * 335.18211 * 11 9 7 30 30 H 1.07994 * 119.54592 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.32287 * 180.02562 * 18 17 16 32 32 H 1.08000 * 120.75795 * 180.02562 * 19 18 17 33 33 H 1.08999 * 113.47096 * 87.65665 * 25 12 11 34 34 H 1.09005 * 113.46966 * 218.04058 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.1900 -2.5422 0.9558 11 6 2.1487 -3.7443 -0.0005 12 7 1.2111 -4.3585 -0.9526 13 6 0.8382 -5.6129 -1.2752 14 8 1.3346 -6.5611 -0.6999 15 6 -0.1768 -5.8355 -2.3313 16 7 -0.7151 -4.7956 -2.9567 17 6 -1.6184 -4.9496 -3.8997 18 6 -2.0449 -6.2131 -4.2774 19 6 -1.5088 -7.3267 -3.6503 20 6 -0.5540 -7.1344 -2.6636 21 6 0.0628 -8.3138 -1.9569 22 9 -0.4784 -9.4985 -2.4673 23 9 1.4469 -8.3077 -2.1604 24 9 -0.2075 -8.2299 -0.5867 25 6 0.8602 -3.0017 -1.3986 26 1 -0.4849 0.8401 0.0004 27 1 -0.3737 -1.7565 0.9535 28 1 2.1849 -4.2533 0.9626 29 1 3.1387 -3.5656 -0.4202 30 1 -2.0337 -4.0796 -4.3865 31 1 -2.7870 -6.3288 -5.0534 32 1 -1.8244 -8.3218 -3.9270 33 1 1.5067 -2.6244 -2.1908 34 1 -0.1991 -2.8796 -1.6251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332045923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:46 Heat of formation + Delta-G solvation = -142.395764 kcal Electronic energy + Delta-G solvation = -27097.986780 eV Core-core repulsion = 22583.254955 eV Total energy + Delta-G solvation = -4514.731826 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.86279 -47.45396 -47.16525 -40.73188 -39.24029 -37.38566 -34.09907 -33.24697 -32.18528 -32.11608 -28.88717 -26.49619 -25.52630 -25.04216 -24.28173 -22.55536 -20.62715 -19.02159 -18.34760 -18.22238 -18.14236 -17.57089 -16.76254 -16.56243 -15.41664 -15.34448 -15.18737 -14.98264 -14.27852 -14.18564 -14.12033 -13.96420 -13.81699 -13.70206 -13.40878 -13.35861 -13.14445 -12.99576 -12.61595 -12.35515 -11.98876 -11.84323 -11.54564 -11.08611 -10.97422 -10.48416 -10.37901 -10.27745 -10.07033 -9.61907 -9.55922 -9.28341 -8.77965 -8.34031 -7.87154 -6.39485 -4.49343 0.30441 0.77328 2.74546 2.86828 3.13883 3.21105 3.24617 3.28944 3.74236 3.79017 4.10342 4.15132 4.19550 4.49714 4.56901 4.65976 4.83485 4.84174 5.04118 5.15784 5.51165 5.60377 5.63784 5.95082 6.12255 6.18384 6.42999 6.58652 6.60794 6.89868 7.12395 7.51392 7.63907 7.81437 8.33871 8.53293 8.58091 9.21632 9.50764 10.67438 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.004036 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.596413 B = 6936.499600 C = 7640.246851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.073 0.927 9 C 0.236 3.764 10 O -0.571 6.571 11 C 0.107 3.893 12 N -0.604 5.604 13 C 0.571 3.429 14 O -0.540 6.540 15 C 0.153 3.847 16 N -0.441 5.441 17 C 0.127 3.873 18 C -0.162 4.162 19 C -0.038 4.038 20 C -0.195 4.195 21 C 0.525 3.475 22 F -0.188 7.188 23 F -0.162 7.162 24 F -0.160 7.160 25 C 0.085 3.915 26 H 0.273 0.727 27 H 0.394 0.606 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.173 0.827 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.109 -10.150 -10.150 15.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.092 0.908 9 C 0.194 3.806 10 O -0.384 6.384 11 C -0.014 4.014 12 N -0.334 5.334 13 C 0.358 3.642 14 O -0.419 6.419 15 C 0.014 3.986 16 N -0.151 5.151 17 C -0.032 4.032 18 C -0.182 4.182 19 C -0.064 4.064 20 C -0.200 4.200 21 C 0.469 3.531 22 F -0.170 7.170 23 F -0.143 7.143 24 F -0.141 7.141 25 C -0.038 4.038 26 H 0.083 0.917 27 H 0.251 0.749 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.190 0.810 31 H 0.168 0.832 32 H 0.172 0.828 33 H 0.098 0.902 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.494 -10.466 -9.470 14.812 hybrid contribution -0.205 0.397 -0.552 0.710 sum -4.700 -10.069 -10.021 14.963 Atomic orbital electron populations 1.69284 1.06197 1.28043 1.50226 1.25069 0.95009 0.99894 0.93031 0.86264 0.80094 0.82228 0.77846 1.19406 1.20675 1.20636 1.21447 0.93928 0.89655 1.51963 0.90846 1.19622 0.85412 0.90870 0.84694 1.86043 1.44986 1.48352 1.59055 1.23461 0.93809 0.92160 0.91990 1.49495 1.40782 1.04632 1.38530 1.17239 0.82221 0.82421 0.82346 1.90829 1.56973 1.40321 1.53781 1.21254 0.94788 0.87830 0.94757 1.68085 1.08289 1.32268 1.06470 1.23248 0.91024 0.97497 0.91398 1.22378 1.01456 0.92994 1.01382 1.21465 0.91998 1.01125 0.91796 1.21069 1.02722 0.94174 1.02000 1.17633 0.76917 0.80769 0.77731 1.93128 1.86103 1.50549 1.87219 1.93236 1.30001 1.96395 1.94663 1.93259 1.93440 1.96032 1.31333 1.24278 1.01720 0.76147 1.01654 0.91662 0.74947 0.91181 0.89236 0.81039 0.83181 0.82846 0.90211 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.56 11.01 55.43 0.61 -21.95 16 2 C 0.07 1.78 5.40 -17.82 -0.10 1.69 16 3 Si 0.91 19.22 29.54 -169.99 -5.02 14.20 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.53 -13.23 8.69 -34.44 -0.30 -13.53 16 8 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 9 C 0.24 5.70 1.59 -91.19 -0.14 5.55 16 10 O -0.57 -14.91 13.54 -35.23 -0.48 -15.39 16 11 C 0.11 2.37 8.03 -8.50 -0.07 2.30 16 12 N -0.60 -13.30 3.69 -186.00 -0.69 -13.99 16 13 C 0.57 12.27 7.87 -12.18 -0.10 12.17 16 14 O -0.54 -12.40 12.04 5.36 0.06 -12.33 16 15 C 0.15 2.75 6.73 -83.01 -0.56 2.19 16 16 N -0.44 -7.19 8.02 -9.80 -0.08 -7.27 16 17 C 0.13 1.44 11.18 -17.56 -0.20 1.25 16 18 C -0.16 -1.45 10.11 -39.32 -0.40 -1.84 16 19 C -0.04 -0.41 9.53 -39.31 -0.37 -0.78 16 20 C -0.19 -2.96 5.41 -104.09 -0.56 -3.52 16 21 C 0.52 8.55 2.78 36.00 0.10 8.65 16 22 F -0.19 -2.55 16.06 2.25 0.04 -2.51 16 23 F -0.16 -2.93 15.02 2.25 0.03 -2.89 16 24 F -0.16 -2.98 15.01 2.25 0.03 -2.95 16 25 C 0.08 1.86 6.92 -8.44 -0.06 1.81 16 26 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 27 H 0.39 10.36 6.33 45.56 0.29 10.64 16 28 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.09 1.79 8.10 -51.93 -0.42 1.37 16 30 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.15 1.20 7.26 -52.49 -0.38 0.82 16 33 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 34 H 0.08 1.79 7.15 -51.93 -0.37 1.42 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -29.69 306.82 -5.73 -35.42 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -2.12 Total: 9.11 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: -2.75 Total: 15.93 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.15 Total: -43.20 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.41 Total: -27.72 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 0.10 Total: -8.36 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.69 -5.73 -35.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332045923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.977 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds