Wall clock time and date at job start Tue Mar 31 2020 12:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00185 * 2 1 4 4 H 1.48498 * 109.46773 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47248 * 300.00605 * 3 2 1 6 6 H 1.48504 * 109.46795 * 60.00585 * 3 2 1 7 7 C 1.37874 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00499 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99845 * 359.97438 * 7 2 1 10 10 O 1.42902 * 113.41442 * 313.20044 * 9 7 2 11 11 C 1.53504 * 114.20523 * 180.02562 * 9 7 2 12 12 N 1.47066 * 88.04678 * 220.37340 * 11 9 7 13 13 C 1.34779 * 136.05579 * 207.05024 * 12 11 9 14 14 O 1.21512 * 120.00066 * 0.02562 * 13 12 11 15 15 C 1.48168 * 119.99839 * 180.02562 * 13 12 11 16 16 N 1.32749 * 119.72503 * 0.02562 * 15 13 12 17 17 C 1.31494 * 121.64350 * 179.97438 * 16 15 13 18 18 C 1.38601 * 120.90062 * 0.02797 * 17 16 15 19 19 C 1.38582 * 119.35431 * 359.97303 * 18 17 16 20 20 C 1.38640 * 118.48867 * 359.75237 * 19 18 17 21 21 C 1.50694 * 120.47214 * 180.26647 * 20 19 18 22 22 F 1.39899 * 109.47174 * 0.25099 * 21 20 19 23 23 F 1.39896 * 109.47200 * 120.25087 * 21 20 19 24 24 F 1.39906 * 109.46825 * 240.25220 * 21 20 19 25 25 C 1.47064 * 87.88659 * 27.09306 * 12 11 9 26 26 H 0.97004 * 119.99468 * 359.97438 * 1 2 3 27 27 H 0.96697 * 113.99512 * 46.80894 * 10 9 7 28 28 H 1.09002 * 113.46865 * 105.56435 * 11 9 7 29 29 H 1.08999 * 113.46581 * 335.18211 * 11 9 7 30 30 H 1.07994 * 119.54592 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.32287 * 180.02562 * 18 17 16 32 32 H 1.08000 * 120.75795 * 180.02562 * 19 18 17 33 33 H 1.08999 * 113.47096 * 87.65665 * 25 12 11 34 34 H 1.09005 * 113.46966 * 218.04058 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.1900 -2.5422 0.9558 11 6 2.1487 -3.7443 -0.0005 12 7 1.2111 -4.3585 -0.9526 13 6 0.8382 -5.6129 -1.2752 14 8 1.3346 -6.5611 -0.6999 15 6 -0.1768 -5.8355 -2.3313 16 7 -0.7151 -4.7956 -2.9567 17 6 -1.6184 -4.9496 -3.8997 18 6 -2.0449 -6.2131 -4.2774 19 6 -1.5088 -7.3267 -3.6503 20 6 -0.5540 -7.1344 -2.6636 21 6 0.0628 -8.3138 -1.9569 22 9 -0.4784 -9.4985 -2.4673 23 9 1.4469 -8.3077 -2.1604 24 9 -0.2075 -8.2299 -0.5867 25 6 0.8602 -3.0017 -1.3986 26 1 -0.4849 0.8401 0.0004 27 1 -0.3737 -1.7565 0.9535 28 1 2.1849 -4.2533 0.9626 29 1 3.1387 -3.5656 -0.4202 30 1 -2.0337 -4.0796 -4.3865 31 1 -2.7870 -6.3288 -5.0534 32 1 -1.8244 -8.3218 -3.9270 33 1 1.5067 -2.6244 -2.1908 34 1 -0.1991 -2.8796 -1.6251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332045923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:45 Heat of formation + Delta-G solvation = -163.583624 kcal Electronic energy + Delta-G solvation = -27098.905555 eV Core-core repulsion = 22583.254955 eV Total energy + Delta-G solvation = -4515.650600 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.12664 -48.68075 -48.52558 -41.95405 -40.78544 -39.05768 -35.96053 -34.31286 -34.11728 -33.19424 -30.56628 -27.89898 -27.02836 -26.80643 -25.50041 -23.66045 -22.23007 -20.56927 -19.64606 -19.48406 -19.44100 -19.30352 -18.22266 -17.88294 -17.10557 -16.73556 -16.71917 -16.22136 -15.91714 -15.51276 -15.47069 -15.20004 -15.05645 -14.98074 -14.85597 -14.73253 -14.60009 -14.34662 -14.00165 -13.98511 -13.73651 -13.40456 -12.98016 -12.77883 -12.74404 -12.22319 -12.14254 -11.63075 -11.36262 -11.12691 -10.84921 -10.65077 -10.55780 -10.14931 -9.62947 -8.26249 -6.43225 -0.78069 -0.13843 1.47302 1.51235 1.54582 1.56950 1.62339 1.74663 2.41663 2.52659 2.61954 2.85840 2.97076 3.02003 3.38295 3.45982 3.70813 3.74960 3.81502 4.06285 4.19369 4.28949 4.42500 4.60677 4.67124 4.81458 4.82844 4.90075 5.07866 5.23954 5.36016 5.74085 5.90984 6.48469 6.62022 6.69566 6.95176 7.30144 7.48889 8.80786 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.004036 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.596413 B = 6936.499600 C = 7640.246851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.033 3.967 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.217 3.783 10 O -0.587 6.587 11 C 0.107 3.893 12 N -0.613 5.613 13 C 0.561 3.439 14 O -0.567 6.567 15 C 0.116 3.884 16 N -0.474 5.474 17 C 0.119 3.881 18 C -0.122 4.122 19 C -0.034 4.034 20 C -0.202 4.202 21 C 0.520 3.480 22 F -0.171 7.171 23 F -0.178 7.178 24 F -0.180 7.180 25 C 0.106 3.894 26 H 0.277 0.723 27 H 0.389 0.611 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.207 0.793 31 H 0.208 0.792 32 H 0.189 0.811 33 H 0.086 0.914 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 -10.122 -12.820 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.167 4.167 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.175 3.825 10 O -0.400 6.400 11 C -0.015 4.015 12 N -0.344 5.344 13 C 0.350 3.650 14 O -0.447 6.447 15 C -0.022 4.022 16 N -0.185 5.185 17 C -0.040 4.040 18 C -0.141 4.141 19 C -0.059 4.059 20 C -0.207 4.207 21 C 0.465 3.535 22 F -0.152 7.152 23 F -0.159 7.159 24 F -0.162 7.162 25 C -0.017 4.017 26 H 0.087 0.913 27 H 0.245 0.755 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.223 0.777 31 H 0.225 0.775 32 H 0.207 0.793 33 H 0.104 0.896 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.983 -10.458 -12.150 17.111 hybrid contribution 0.144 0.310 0.198 0.395 sum -5.838 -10.148 -11.952 16.731 Atomic orbital electron populations 1.69345 1.07226 1.28913 1.50282 1.25775 0.95761 1.02697 0.92490 0.85282 0.78920 0.78337 0.77726 1.19099 1.20053 1.20744 1.21659 0.94184 0.90353 1.52743 0.90640 1.19892 0.85432 0.91625 0.85522 1.86028 1.45602 1.48201 1.60143 1.23453 0.94603 0.91421 0.91996 1.49526 1.41079 1.05056 1.38720 1.17979 0.82586 0.81585 0.82865 1.90787 1.58117 1.40786 1.55059 1.20667 0.96228 0.89501 0.95854 1.67945 1.10058 1.32357 1.08140 1.23973 0.89701 1.00195 0.90095 1.22985 0.99949 0.90889 1.00257 1.21976 0.90245 1.03628 0.90052 1.21098 1.04052 0.92247 1.03291 1.17872 0.76437 0.82075 0.77106 1.93149 1.85667 1.49610 1.86777 1.93194 1.31510 1.96568 1.94656 1.93209 1.93498 1.96238 1.33215 1.23948 1.01181 0.76128 1.00401 0.91312 0.75471 0.92451 0.87446 0.77689 0.77513 0.79336 0.89612 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.33 11.01 21.45 0.24 -46.10 16 2 C 0.03 1.63 5.40 84.65 0.46 2.09 16 3 Si 0.97 39.10 29.54 68.60 2.03 41.13 16 4 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.55 -27.73 8.69 25.60 0.22 -27.51 16 8 H 0.08 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.22 10.75 1.59 -11.16 -0.02 10.73 16 10 O -0.59 -31.73 13.54 -148.98 -2.02 -33.75 16 11 C 0.11 4.91 8.03 83.18 0.67 5.58 16 12 N -0.61 -27.93 3.69 -861.11 -3.18 -31.11 16 13 C 0.56 24.98 7.87 86.88 0.68 25.67 16 14 O -0.57 -27.24 12.04 -3.75 -0.05 -27.28 16 15 C 0.12 4.16 6.73 41.89 0.28 4.44 16 16 N -0.47 -14.97 8.02 -184.91 -1.48 -16.46 16 17 C 0.12 2.27 11.18 84.83 0.95 3.22 16 18 C -0.12 -1.50 10.11 22.44 0.23 -1.27 16 19 C -0.03 -0.59 9.53 22.45 0.21 -0.38 16 20 C -0.20 -5.89 5.41 -19.52 -0.11 -6.00 16 21 C 0.52 16.91 2.78 71.23 0.20 17.11 16 22 F -0.17 -4.35 16.06 44.97 0.72 -3.63 16 23 F -0.18 -6.60 15.02 44.97 0.68 -5.93 16 24 F -0.18 -6.96 15.01 44.97 0.67 -6.28 16 25 C 0.11 4.77 6.92 83.22 0.58 5.35 16 26 H 0.28 13.12 8.31 -92.71 -0.77 12.35 16 27 H 0.39 21.18 6.33 -74.06 -0.47 20.71 16 28 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.11 4.42 8.10 -2.39 -0.02 4.40 16 30 H 0.21 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.21 0.30 8.06 -2.91 -0.02 0.28 16 32 H 0.19 1.93 7.26 -2.91 -0.02 1.91 16 33 H 0.09 3.69 8.10 -2.39 -0.02 3.67 16 34 H 0.07 3.29 7.15 -2.38 -0.02 3.27 16 Total: -1.00 -68.24 306.82 2.68 -65.56 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.72 Total: 24.82 kcal Atomic # 6 Polarization: 34.68 SS G_CDS: 4.35 Total: 39.03 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -4.42 Total: -93.67 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -2.06 Total: -61.03 kcal Atomic # 9 Polarization: -17.91 SS G_CDS: 2.07 Total: -15.83 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -68.24 2.68 -65.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332045923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.027 kcal (2) G-P(sol) polarization free energy of solvation -68.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds