Wall clock time and date at job start Tue Mar 31 2020 11:26:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 O 1.21378 * 119.99865 * 2 1
4 4 C 1.46341 * 120.00458 * 179.97438 * 2 1 3
5 5 C 1.36387 * 122.69957 * 179.97438 * 4 2 1
6 6 S 1.70977 * 109.07076 * 180.02562 * 5 4 2
7 7 C 1.75918 * 90.78539 * 0.02562 * 6 5 4
8 8 N 1.38691 * 125.12131 * 179.97438 * 7 6 5
9 9 C 1.34773 * 120.00088 * 0.02562 * 8 7 6
10 10 O 1.21598 * 119.99979 * 0.02562 * 9 8 7
11 11 C 1.47570 * 120.00361 * 179.97438 * 9 8 7
12 12 C 1.40049 * 119.89199 * 359.72956 * 11 9 8
13 13 C 1.36303 * 120.09916 * 179.71483 * 12 11 9
14 14 C 1.40905 * 119.89189 * 0.55549 * 13 12 11
15 15 C 1.41086 * 120.09649 * 179.69923 * 14 13 12
16 16 H 1.08001 * 119.99460 * 155.07634 * 15 14 13
17 17 C 1.40228 * 119.99855 * 335.07351 * 15 14 13
18 18 N 1.30644 * 120.00376 * 342.20977 * 17 15 14
19 19 Si 1.86804 * 119.99782 * 162.20778 * 17 15 14
20 20 H 1.48499 * 109.46926 * 94.65875 * 19 17 15
21 21 H 1.48496 * 109.47361 * 214.66338 * 19 17 15
22 22 H 1.48498 * 109.47179 * 334.66517 * 19 17 15
23 23 C 1.40906 * 119.80105 * 359.71611 * 14 13 12
24 24 C 1.36295 * 119.89266 * 0.02562 * 23 14 13
25 25 N 1.29405 * 109.75976 * 359.97438 * 7 6 5
26 26 H 1.08996 * 109.46948 * 239.99740 * 1 2 3
27 27 H 1.08998 * 109.47523 * 0.02562 * 1 2 3
28 28 H 1.09000 * 109.47269 * 120.00291 * 1 2 3
29 29 H 1.08001 * 125.47070 * 0.02562 * 5 4 2
30 30 H 0.96996 * 120.00399 * 180.02562 * 8 7 6
31 31 H 1.07999 * 119.95257 * 0.02562 * 12 11 9
32 32 H 1.08001 * 120.04986 * 180.27368 * 13 12 11
33 33 H 0.97001 * 120.00058 * 179.97438 * 18 17 15
34 34 H 1.08001 * 120.05284 * 179.97438 * 23 14 13
35 35 H 1.08000 * 119.94546 * 179.97438 * 24 23 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1138 1.0512 0.0000
4 6 2.2388 -1.2673 0.0006
5 6 3.6011 -1.3314 0.0001
6 16 4.0832 -2.9718 0.0003
7 6 2.4023 -3.4909 0.0002
8 7 1.9747 -4.8102 -0.0002
9 6 2.8772 -5.8112 -0.0001
10 8 4.0664 -5.5575 0.0009
11 6 2.4222 -7.2150 0.0001
12 6 1.0520 -7.5046 0.0058
13 6 0.6270 -8.7997 0.0001
14 6 1.5688 -9.8478 0.0003
15 6 1.1337 -11.1899 0.0008
16 1 1.7740 -11.9652 -0.3933
17 6 -0.1300 -11.5170 0.5129
18 7 -0.7570 -10.6761 1.2917
19 14 -0.9171 -13.1553 0.0816
20 1 -0.6133 -14.1457 1.1456
21 1 -2.3879 -12.9839 -0.0299
22 1 -0.3755 -13.6389 -1.2138
23 6 2.9463 -9.5514 0.0003
24 6 3.3619 -8.2534 0.0006
25 7 1.6250 -2.4563 0.0006
26 1 -0.3633 -0.5139 0.8899
27 1 -0.3634 1.0276 -0.0005
28 1 -0.3634 -0.5139 -0.8899
29 1 4.2685 -0.4823 -0.0004
30 1 1.0261 -5.0126 -0.0006
31 1 0.3309 -6.7006 0.0097
32 1 -0.4298 -9.0221 0.0001
33 1 -1.6314 -10.9023 1.6457
34 1 3.6717 -10.3516 0.0008
35 1 4.4175 -8.0253 0.0011
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000340341642.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:03
Heat of formation + Delta-G solvation = -27.446949 kcal
Electronic energy + Delta-G solvation = -21977.750661 eV
Core-core repulsion = 18452.613001 eV
Total energy + Delta-G solvation = -3525.137660 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 316.067 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.61733 -40.97390 -39.47712 -38.95137 -35.97042 -35.72529 -32.34210 -31.43101
-31.32774 -30.69075 -28.01110 -26.21470 -24.49444 -23.11140 -22.60040 -22.17894
-20.38015 -19.40140 -19.11670 -18.44945 -17.79281 -17.24598 -16.98903 -16.87891
-16.11474 -16.05659 -15.77824 -15.56431 -15.12966 -14.79822 -14.57498 -14.44016
-13.91873 -13.78986 -13.38813 -13.27065 -13.06634 -12.92500 -12.82135 -12.67004
-12.38480 -12.12906 -11.81210 -11.40429 -11.21439 -11.13618 -11.01512 -10.88330
-10.51320 -9.65674 -9.55712 -9.27752 -8.84150 -6.52317 -0.62660 -0.06594
0.14553 0.60540 0.73018 1.15637 1.37740 1.42588 1.55566 1.56635
1.84765 2.12276 2.16481 2.70659 3.00509 3.57878 3.64992 3.99023
4.15220 4.25020 4.27814 4.43058 4.48310 4.66028 4.72286 4.92424
4.97990 5.00647 5.12701 5.18973 5.24067 5.53307 5.66429 5.81511
5.96745 5.99188 6.18776 6.28277 6.50618 6.60387 6.72963 6.83935
6.91431 8.10147
Molecular weight = 316.07amu
Principal moments of inertia in cm(-1)
A = 0.026503 B = 0.002637 C = 0.002416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1056.227716 B =10616.699354 C =11588.712035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.436 3.564
3 O -0.487 6.487
4 C -0.028 4.028
5 C -0.270 4.270
6 S 0.287 5.713
7 C 0.250 3.750
8 N -0.618 5.618
9 C 0.576 3.424
10 O -0.554 6.554
11 C -0.294 4.294
12 C -0.051 4.051
13 C -0.197 4.197
14 C 0.104 3.896
15 C -0.461 4.461
16 H 0.089 0.911
17 C 0.038 3.962
18 N -0.790 5.790
19 Si 0.985 3.015
20 H -0.262 1.262
21 H -0.263 1.263
22 H -0.256 1.256
23 C -0.252 4.252
24 C -0.019 4.019
25 N -0.478 5.478
26 H 0.104 0.896
27 H 0.094 0.906
28 H 0.105 0.895
29 H 0.200 0.800
30 H 0.431 0.569
31 H 0.124 0.876
32 H 0.114 0.886
33 H 0.299 0.701
34 H 0.108 0.892
35 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.913 9.865 -1.713 10.054
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.314 3.686
3 O -0.364 6.364
4 C -0.162 4.162
5 C -0.413 4.413
6 S 0.540 5.460
7 C -0.120 4.120
8 N -0.268 5.268
9 C 0.373 3.627
10 O -0.435 6.435
11 C -0.299 4.299
12 C -0.070 4.070
13 C -0.216 4.216
14 C 0.101 3.899
15 C -0.488 4.488
16 H 0.107 0.893
17 C -0.182 4.182
18 N -0.413 5.413
19 Si 0.805 3.195
20 H -0.186 1.186
21 H -0.187 1.187
22 H -0.180 1.180
23 C -0.271 4.271
24 C -0.038 4.038
25 N -0.202 5.202
26 H 0.123 0.877
27 H 0.112 0.888
28 H 0.123 0.877
29 H 0.217 0.783
30 H 0.273 0.727
31 H 0.142 0.858
32 H 0.132 0.868
33 H 0.110 0.890
34 H 0.126 0.874
35 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges 0.375 9.943 -1.553 10.071
hybrid contribution -1.255 -0.130 0.058 1.264
sum -0.881 9.813 -1.494 9.965
Atomic orbital electron populations
1.22087 0.90036 1.05388 1.06023 1.21977 0.93118 0.84496 0.68996
1.90563 1.73311 1.33648 1.38868 1.20957 0.91261 0.93456 1.10491
1.27737 0.99945 1.06679 1.06962 1.85144 1.03845 0.92061 1.64901
1.24484 0.95141 0.89281 1.03117 1.42705 1.12585 1.00074 1.71446
1.18674 0.84514 0.85534 0.74019 1.90571 1.16976 1.83543 1.52450
1.18675 0.94325 0.89324 1.27584 1.20732 0.93529 0.96670 0.96095
1.21004 0.99582 0.91982 1.09081 1.18182 0.91853 0.94243 0.85662
1.20219 1.01009 0.94201 1.33361 0.89256 1.26932 0.96484 1.03069
0.91711 1.69743 1.14121 1.37714 1.19697 0.85120 0.77952 0.76347
0.80069 1.18630 1.18689 1.17988 1.20876 0.95419 0.95637 1.15197
1.20508 0.98049 0.91983 0.93285 1.67027 1.35592 0.96459 1.21073
0.87721 0.88763 0.87670 0.78290 0.72690 0.85845 0.86819 0.88957
0.87367 0.86872
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.01 9.93 71.23 0.71 -2.30 16
2 C 0.44 10.53 7.21 27.79 0.20 10.73 16
3 O -0.49 -13.89 17.41 -3.33 -0.06 -13.95 16
4 C -0.03 -0.75 6.65 40.52 0.27 -0.48 16
5 C -0.27 -6.70 10.62 67.39 0.72 -5.98 16
6 S 0.29 7.83 20.24 -56.49 -1.14 6.69 16
7 C 0.25 7.44 8.34 179.37 1.50 8.93 16
8 N -0.62 -18.86 5.34 -313.07 -1.67 -20.53 16
9 C 0.58 20.89 7.72 86.71 0.67 21.56 16
10 O -0.55 -21.47 13.80 -4.03 -0.06 -21.53 16
11 C -0.29 -11.76 5.89 -19.94 -0.12 -11.88 16
12 C -0.05 -2.01 9.47 22.26 0.21 -1.80 16
13 C -0.20 -8.91 8.63 22.47 0.19 -8.72 16
14 C 0.10 4.95 5.57 -21.27 -0.12 4.84 16
15 C -0.46 -21.53 9.04 23.45 0.21 -21.32 16
16 H 0.09 3.98 7.91 -2.91 -0.02 3.95 16
17 C 0.04 1.65 5.13 85.35 0.44 2.09 16
18 N -0.79 -35.23 10.97 21.87 0.24 -34.99 16
19 Si 0.99 32.35 29.60 68.60 2.03 34.38 16
20 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16
21 H -0.26 -8.20 7.11 99.48 0.71 -7.49 16
22 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16
23 C -0.25 -11.24 9.73 22.47 0.22 -11.02 16
24 C -0.02 -0.80 9.52 22.26 0.21 -0.59 16
25 N -0.48 -13.36 10.33 -187.03 -1.93 -15.29 16
26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16
27 H 0.09 1.33 8.12 -2.39 -0.02 1.32 16
28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16
29 H 0.20 4.16 8.01 -2.91 -0.02 4.13 16
30 H 0.43 11.47 6.82 -92.71 -0.63 10.84 16
31 H 0.12 3.90 6.37 -2.91 -0.02 3.88 16
32 H 0.11 5.26 6.17 -2.91 -0.02 5.25 16
33 H 0.30 11.83 8.29 -92.71 -0.77 11.06 16
34 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16
35 H 0.11 4.48 7.63 -2.91 -0.02 4.46 16
Total: -1.00 -54.64 326.15 3.25 -51.39
By element:
Atomic # 1 Polarization: 29.23 SS G_CDS: 0.53 Total: 29.77 kcal
Atomic # 6 Polarization: -21.25 SS G_CDS: 5.31 Total: -15.94 kcal
Atomic # 7 Polarization: -67.45 SS G_CDS: -3.36 Total: -70.81 kcal
Atomic # 8 Polarization: -35.36 SS G_CDS: -0.11 Total: -35.47 kcal
Atomic # 14 Polarization: 32.35 SS G_CDS: 2.03 Total: 34.38 kcal
Atomic # 16 Polarization: 7.83 SS G_CDS: -1.14 Total: 6.69 kcal
Total: -54.64 3.25 -51.39 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000340341642.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.943 kcal
(2) G-P(sol) polarization free energy of solvation -54.640 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.697 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.390 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.447 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds