Wall clock time and date at job start Tue Mar 31 2020 11:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99937 * 2 1 4 4 H 1.48499 * 109.46978 * 270.00197 * 3 2 1 5 5 H 1.48501 * 109.46985 * 30.00119 * 3 2 1 6 6 H 1.48503 * 109.47234 * 150.00289 * 3 2 1 7 7 C 1.37882 * 120.00518 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99599 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00151 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46985 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.34770 * 119.99900 * 180.02562 * 11 10 9 13 13 O 1.21358 * 120.00216 * 359.73228 * 12 11 10 14 14 C 1.49344 * 119.99962 * 180.02562 * 12 11 10 15 15 O 1.21385 * 120.00092 * 359.72659 * 14 12 11 16 16 N 1.34781 * 120.00184 * 179.73003 * 14 12 11 17 17 C 1.39800 * 120.00005 * 175.38698 * 16 14 12 18 18 C 1.38893 * 120.02781 * 214.82223 * 17 16 14 19 19 C 1.38325 * 119.96412 * 179.76708 * 18 17 16 20 20 F 1.35095 * 119.97910 * 180.27828 * 19 18 17 21 21 C 1.38631 * 120.03146 * 0.50806 * 19 18 17 22 22 F 1.35103 * 119.96785 * 179.71855 * 21 19 18 23 23 C 1.38642 * 120.06265 * 359.74691 * 21 19 18 24 24 F 1.35105 * 119.98239 * 179.97438 * 23 21 19 25 25 C 1.38312 * 120.03191 * 359.97438 * 23 21 19 26 26 H 0.97001 * 120.00034 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47410 * 60.00089 * 9 7 2 28 28 H 1.08998 * 109.47122 * 299.99879 * 9 7 2 29 29 H 1.09005 * 109.46650 * 60.00021 * 10 9 7 30 30 H 1.08998 * 109.47417 * 300.00096 * 10 9 7 31 31 H 0.97002 * 119.99890 * 0.02562 * 11 10 9 32 32 H 0.97001 * 119.99782 * 355.37677 * 16 14 12 33 33 H 1.07995 * 120.01698 * 0.02562 * 18 17 16 34 34 H 1.08002 * 120.01825 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4867 -2.6364 -0.0022 12 6 6.1605 -3.8035 -0.0028 13 8 5.5538 -4.8546 0.0025 14 6 7.6540 -3.8035 -0.0034 15 8 8.2609 -2.7523 -0.0084 16 7 8.3279 -4.9707 0.0014 17 6 9.7225 -4.9731 -0.0965 18 6 10.3692 -5.9911 -0.7855 19 6 11.7488 -5.9895 -0.8857 20 9 12.3777 -6.9764 -1.5605 21 6 12.4865 -4.9782 -0.2899 22 9 13.8343 -4.9810 -0.3838 23 6 11.8426 -3.9643 0.4026 24 9 12.5632 -2.9798 0.9830 25 6 10.4629 -3.9602 0.4995 26 1 -0.4850 0.8401 0.0004 27 1 3.8753 -0.6803 0.8889 28 1 3.8745 -0.6799 -0.8911 29 1 3.6579 -3.1504 -0.8908 30 1 3.6587 -3.1501 0.8892 31 1 5.9717 -1.7963 -0.0025 32 1 7.8453 -5.8091 0.0730 33 1 9.7949 -6.7811 -1.2462 34 1 9.9615 -3.1705 1.0394 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344446529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:55 Heat of formation + Delta-G solvation = -172.267999 kcal Electronic energy + Delta-G solvation = -24682.480168 eV Core-core repulsion = 20166.452985 eV Total energy + Delta-G solvation = -4516.027183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.17050 -49.63017 -48.85086 -41.44466 -39.58028 -38.31258 -35.81404 -34.91275 -32.92339 -31.16550 -30.49645 -30.07134 -26.35069 -24.55601 -24.02987 -22.72549 -21.05104 -20.74111 -19.44015 -18.69836 -18.31071 -18.00259 -17.23938 -17.14953 -16.76957 -16.48345 -16.15324 -15.93526 -15.90986 -15.43155 -15.31818 -15.16346 -14.77510 -14.58846 -14.25807 -13.95025 -13.64516 -13.40187 -13.20742 -12.70275 -12.68951 -12.28616 -11.81874 -11.61523 -11.34857 -10.82028 -10.54728 -10.44388 -10.04623 -9.77721 -9.50818 -9.43149 -8.99219 -8.89638 -8.68885 -6.19064 -4.20576 0.03052 0.20093 1.14667 1.86106 2.53328 2.87230 3.01062 3.21194 3.29800 3.30140 3.32383 3.62616 3.70559 3.90597 4.26388 4.27485 4.31267 4.45479 4.90858 5.09995 5.13848 5.16460 5.38149 5.56833 5.81134 5.96884 6.07999 6.25695 6.35660 6.45105 6.91146 7.07453 7.14622 7.45604 7.55072 7.92295 8.33595 8.83668 9.40437 10.93536 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.027112 B = 0.002330 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.490464 B =12012.292719 C =12824.950655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.126 3.874 11 N -0.685 5.685 12 C 0.503 3.497 13 O -0.521 6.521 14 C 0.513 3.487 15 O -0.492 6.492 16 N -0.646 5.646 17 C 0.200 3.800 18 C -0.160 4.160 19 C 0.122 3.878 20 F -0.115 7.115 21 C 0.016 3.984 22 F -0.117 7.117 23 C 0.123 3.877 24 F -0.113 7.113 25 C -0.142 4.142 26 H 0.266 0.734 27 H 0.025 0.975 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.410 0.590 32 H 0.432 0.568 33 H 0.162 0.838 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.330 -11.695 -0.029 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.005 3.995 11 N -0.336 5.336 12 C 0.282 3.718 13 O -0.398 6.398 14 C 0.296 3.704 15 O -0.365 6.365 16 N -0.294 5.294 17 C 0.104 3.896 18 C -0.181 4.181 19 C 0.101 3.899 20 F -0.093 7.093 21 C -0.006 4.006 22 F -0.096 7.096 23 C 0.102 3.898 24 F -0.091 7.091 25 C -0.163 4.163 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.246 0.754 32 H 0.271 0.729 33 H 0.179 0.821 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 24.130 -11.523 -0.043 26.740 hybrid contribution 0.873 0.912 -0.076 1.265 sum 25.003 -10.610 -0.118 27.161 Atomic orbital electron populations 1.69891 1.06303 1.27218 1.49941 1.24987 0.94773 0.99195 0.94187 0.86769 0.80309 0.83487 0.78645 1.20128 1.21185 1.18968 1.20847 0.88329 0.94989 1.52315 0.90500 1.19831 0.98216 0.90779 0.97317 1.21800 0.74105 1.01135 1.02452 1.46238 1.09811 1.07791 1.69724 1.19522 0.86608 0.85641 0.80073 1.90793 1.69112 1.30829 1.49074 1.20813 0.89812 0.83517 0.76306 1.90791 1.69730 1.30869 1.45065 1.43162 1.03962 1.11159 1.71122 1.16987 0.83057 0.94698 0.94907 1.20827 0.92046 1.02484 1.02769 1.16850 0.89914 0.86891 0.96269 1.91590 1.82117 1.58503 1.77080 1.17550 0.78419 0.98217 1.06377 1.91566 1.27011 1.96257 1.94731 1.17034 0.89247 0.86737 0.96784 1.91598 1.77315 1.58705 1.81522 1.21287 0.90761 1.02055 1.02206 0.92420 0.95662 0.96096 0.90977 0.90921 0.75386 0.72855 0.82066 0.81123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.96 55.43 0.77 -25.63 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.39 27.47 -169.99 -4.67 15.72 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 7 C -0.53 -13.98 9.66 -34.44 -0.33 -14.31 16 8 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 10 C 0.13 2.27 5.61 -4.04 -0.02 2.25 16 11 N -0.68 -10.07 5.55 -60.76 -0.34 -10.40 16 12 C 0.50 6.81 7.89 -11.64 -0.09 6.72 16 13 O -0.52 -8.05 16.48 5.49 0.09 -7.96 16 14 C 0.51 5.69 7.73 -11.63 -0.09 5.60 16 15 O -0.49 -6.19 13.91 5.47 0.08 -6.11 16 16 N -0.65 -5.26 5.32 -10.29 -0.05 -5.31 16 17 C 0.20 1.57 6.30 -83.74 -0.53 1.04 16 18 C -0.16 -1.03 9.94 -39.31 -0.39 -1.42 16 19 C 0.12 0.97 7.30 -39.40 -0.29 0.68 16 20 F -0.11 -0.98 17.18 2.25 0.04 -0.94 16 21 C 0.02 0.15 7.31 -39.29 -0.29 -0.14 16 22 F -0.12 -1.22 17.09 2.25 0.04 -1.18 16 23 C 0.12 1.15 7.30 -39.41 -0.29 0.86 16 24 F -0.11 -1.17 17.18 2.25 0.04 -1.13 16 25 C -0.14 -1.27 8.67 -39.31 -0.34 -1.61 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.03 0.53 7.20 -51.93 -0.37 0.16 16 28 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.41 5.50 7.94 -40.82 -0.32 5.17 16 32 H 0.43 2.69 8.30 -40.82 -0.34 2.35 16 33 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.17 1.65 6.22 -52.49 -0.33 1.33 16 LS Contribution 320.08 15.07 4.82 4.82 Total: -1.00 -30.23 320.08 -4.66 -34.90 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -2.61 Total: 2.32 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -2.87 Total: 0.92 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.38 Total: -41.34 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.17 Total: -14.08 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.12 Total: -3.26 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.23 -4.66 -34.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344446529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.372 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds