Wall clock time and date at job start Tue Mar 31 2020 11:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86802 * 120.00091 * 2 1 4 4 H 1.48501 * 109.47060 * 270.00301 * 3 2 1 5 5 H 1.48507 * 109.47296 * 30.00125 * 3 2 1 6 6 H 1.48503 * 109.47458 * 150.00164 * 3 2 1 7 7 C 1.39984 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99941 * 196.70594 * 7 2 1 9 9 C 1.41067 * 119.99528 * 16.70349 * 7 2 1 10 10 C 1.40917 * 120.15879 * 25.50414 * 9 7 2 11 11 C 1.36328 * 119.82926 * 180.23086 * 10 9 7 12 12 C 1.39569 * 120.16328 * 359.51509 * 11 10 9 13 13 N 1.38946 * 119.83586 * 180.28043 * 12 11 10 14 14 C 1.34777 * 120.00111 * 34.41517 * 13 12 11 15 15 O 1.21392 * 119.99983 * 5.10979 * 14 13 12 16 16 C 1.49277 * 119.99894 * 185.10093 * 14 13 12 17 17 O 1.21368 * 119.99803 * 359.97438 * 16 14 13 18 18 N 1.34773 * 119.99707 * 180.02562 * 16 14 13 19 19 C 1.46501 * 120.00129 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.47572 * 179.97438 * 19 18 16 21 21 F 1.39897 * 109.47109 * 59.99382 * 20 19 18 22 22 F 1.39897 * 109.47265 * 179.97438 * 20 19 18 23 23 F 1.39906 * 109.46688 * 300.00027 * 20 19 18 24 24 C 1.39565 * 120.32658 * 0.25755 * 12 11 10 25 25 C 1.36325 * 120.16139 * 359.97438 * 24 12 11 26 26 H 0.97001 * 119.99648 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.08701 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.91413 * 179.79785 * 11 10 9 29 29 H 0.96999 * 120.00042 * 214.41951 * 13 12 11 30 30 H 0.97003 * 120.00435 * 359.97438 * 18 16 14 31 31 H 1.09002 * 109.46655 * 299.99533 * 19 18 16 32 32 H 1.09002 * 109.46722 * 59.99188 * 19 18 16 33 33 H 1.08001 * 119.92161 * 180.02562 * 24 12 11 34 34 H 1.07996 * 120.08533 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5399 1.4402 0.7000 7 6 2.0082 -1.2123 -0.0005 8 1 3.0540 -1.2321 0.2683 9 6 1.3475 -2.4080 -0.3522 10 6 0.2142 -2.3709 -1.1889 11 6 -0.4220 -3.5301 -1.5207 12 6 0.0525 -4.7523 -1.0421 13 7 -0.5977 -5.9301 -1.3893 14 6 -1.1614 -6.0549 -2.6071 15 8 -1.0220 -5.1766 -3.4334 16 6 -1.9570 -7.2734 -2.9400 17 8 -2.0958 -8.1518 -2.1140 18 7 -2.5202 -7.3984 -4.1580 19 6 -3.3015 -8.5939 -4.4845 20 6 -3.8260 -8.4847 -5.9176 21 9 -2.7474 -8.3765 -6.8020 22 9 -4.5716 -9.6266 -6.2296 23 9 -4.6382 -7.3513 -6.0318 24 6 1.1772 -4.7972 -0.2169 25 6 1.8208 -3.6457 0.1271 26 1 -0.4850 0.8401 0.0004 27 1 -0.1514 -1.4263 -1.5637 28 1 -1.2926 -3.5030 -2.1592 29 1 -0.6460 -6.6625 -0.7551 30 1 -2.4090 -6.6965 -4.8182 31 1 -2.6688 -9.4769 -4.3951 32 1 -4.1421 -8.6779 -3.7956 33 1 1.5390 -5.7466 0.1495 34 1 2.6912 -3.6819 0.7654 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354869263.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:41 Heat of formation + Delta-G solvation = -199.426823 kcal Electronic energy + Delta-G solvation = -25068.637491 eV Core-core repulsion = 20551.432613 eV Total energy + Delta-G solvation = -4517.204878 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.58913 -48.10905 -48.05075 -40.70838 -38.89847 -37.25936 -35.73541 -34.55004 -33.04661 -30.11107 -29.62328 -29.17923 -25.97279 -24.37791 -23.11338 -21.53098 -21.11668 -20.08524 -19.05589 -18.90951 -18.86100 -17.54281 -17.39331 -16.81819 -16.15232 -15.99663 -15.44886 -15.20349 -14.99825 -14.81608 -14.48406 -14.39372 -14.20979 -14.18886 -14.04083 -13.96459 -13.40601 -12.98736 -12.75901 -12.41385 -12.21476 -11.94206 -11.61125 -11.49860 -11.19282 -11.17019 -10.76927 -9.98822 -9.83757 -9.76728 -9.57933 -9.20176 -9.04768 -7.64413 -7.13597 -6.84800 -4.40911 1.35985 1.90659 2.32107 2.62262 2.98904 3.02276 3.06019 3.07543 3.19516 3.42197 3.53697 3.55366 3.85701 3.87222 4.52486 4.61700 4.62643 4.79102 5.58551 5.59715 6.06086 6.25492 6.55107 6.64470 6.84246 6.92265 7.01983 7.14772 7.35178 7.49193 7.60228 7.77632 7.94776 8.02192 8.17269 8.40802 8.52999 8.76976 8.87001 10.06973 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.027375 B = 0.002475 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.586764 B =11311.051972 C =11953.682739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.110 3.890 10 C -0.157 4.157 11 C -0.080 4.080 12 C -0.024 4.024 13 N -0.606 5.606 14 C 0.487 3.513 15 O -0.510 6.510 16 C 0.522 3.478 17 O -0.517 6.517 18 N -0.708 5.708 19 C 0.077 3.923 20 C 0.449 3.551 21 F -0.176 7.176 22 F -0.173 7.173 23 F -0.175 7.175 24 C -0.092 4.092 25 C -0.216 4.216 26 H 0.283 0.717 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.407 0.593 30 H 0.421 0.579 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 -13.413 -8.023 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.481 4.481 8 H 0.099 0.901 9 C 0.107 3.893 10 C -0.176 4.176 11 C -0.100 4.100 12 C -0.116 4.116 13 N -0.250 5.250 14 C 0.267 3.733 15 O -0.387 6.387 16 C 0.304 3.696 17 O -0.391 6.391 18 N -0.365 5.365 19 C -0.049 4.049 20 C 0.395 3.605 21 F -0.157 7.157 22 F -0.154 7.154 23 F -0.157 7.157 24 C -0.112 4.112 25 C -0.236 4.236 26 H 0.094 0.906 27 H 0.139 0.861 28 H 0.119 0.881 29 H 0.242 0.758 30 H 0.259 0.741 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.293 -13.262 -8.016 17.126 hybrid contribution 0.134 0.626 -0.247 0.686 sum -7.159 -12.636 -8.263 16.709 Atomic orbital electron populations 1.69812 1.07665 1.29561 1.33948 1.25985 0.94792 1.01564 0.92190 0.86256 0.80447 0.80276 0.79458 1.19137 1.20223 1.18518 1.19624 0.97837 0.91125 1.39544 0.90126 1.17710 0.91275 0.92143 0.88189 1.20973 0.99183 0.96714 1.00777 1.20387 0.98983 0.91253 0.99352 1.17113 0.99391 0.83872 1.11218 1.42615 1.51648 1.17147 1.13548 1.19588 0.83014 0.86945 0.83706 1.90797 1.59458 1.41133 1.47287 1.20460 0.79755 0.87846 0.81559 1.90767 1.59292 1.41584 1.47468 1.45379 1.52880 1.21760 1.16476 1.22528 0.99714 0.91954 0.90660 1.20472 0.76228 0.74219 0.89628 1.93251 1.54960 1.95722 1.71766 1.93229 1.77462 1.50689 1.94054 1.93256 1.73949 1.51679 1.96774 1.20052 0.94081 0.97409 0.99681 1.20561 1.03620 0.92513 1.06903 0.90596 0.86057 0.88060 0.75791 0.74055 0.86267 0.86262 0.88830 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.68 10.95 55.55 0.61 -19.07 16 2 C 0.07 1.79 5.15 -17.33 -0.09 1.70 16 3 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.55 9.04 -37.86 -0.34 -11.89 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.11 2.83 5.57 -106.80 -0.59 2.24 16 10 C -0.16 -4.03 8.63 -39.26 -0.34 -4.37 16 11 C -0.08 -1.90 8.57 -39.77 -0.34 -2.24 16 12 C -0.02 -0.51 6.27 -83.65 -0.52 -1.04 16 13 N -0.61 -10.75 5.28 -10.20 -0.05 -10.80 16 14 C 0.49 8.29 7.60 -11.67 -0.09 8.20 16 15 O -0.51 -10.03 14.19 5.46 0.08 -9.95 16 16 C 0.52 7.13 7.88 -11.67 -0.09 7.04 16 17 O -0.52 -7.55 16.48 5.48 0.09 -7.46 16 18 N -0.71 -7.50 5.41 -60.79 -0.33 -7.83 16 19 C 0.08 0.58 5.64 -4.04 -0.02 0.56 16 20 C 0.45 3.50 3.11 37.16 0.12 3.61 16 21 F -0.18 -1.57 17.18 2.25 0.04 -1.53 16 22 F -0.17 -1.34 17.32 2.25 0.04 -1.30 16 23 F -0.18 -1.59 17.18 2.25 0.04 -1.55 16 24 C -0.09 -1.96 9.90 -39.78 -0.39 -2.35 16 25 C -0.22 -5.04 9.74 -39.26 -0.38 -5.43 16 26 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 27 H 0.12 3.23 6.18 -52.48 -0.32 2.91 16 28 H 0.10 2.37 6.46 -52.49 -0.34 2.03 16 29 H 0.41 6.17 8.29 -40.82 -0.34 5.83 16 30 H 0.42 4.41 7.83 -40.82 -0.32 4.09 16 31 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 319.33 15.07 4.81 4.81 Total: -1.00 -28.62 319.33 -5.36 -33.99 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -2.56 Total: 11.63 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -3.09 Total: -3.97 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.23 Total: -37.70 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.17 Total: -17.41 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.12 Total: -4.38 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.62 -5.36 -33.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354869263.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.439 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds