Wall clock time and date at job start Tue Mar 31 2020 11:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86802 * 120.00091 * 2 1 4 4 H 1.48501 * 109.47060 * 270.00301 * 3 2 1 5 5 H 1.48507 * 109.47296 * 30.00125 * 3 2 1 6 6 H 1.48503 * 109.47458 * 150.00164 * 3 2 1 7 7 C 1.39984 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99941 * 196.70594 * 7 2 1 9 9 C 1.41067 * 119.99528 * 16.70349 * 7 2 1 10 10 C 1.40917 * 120.15879 * 25.50414 * 9 7 2 11 11 C 1.36328 * 119.82926 * 180.23086 * 10 9 7 12 12 C 1.39569 * 120.16328 * 359.51509 * 11 10 9 13 13 N 1.38946 * 119.83586 * 180.28043 * 12 11 10 14 14 C 1.34777 * 120.00111 * 34.41517 * 13 12 11 15 15 O 1.21392 * 119.99983 * 5.10979 * 14 13 12 16 16 C 1.49277 * 119.99894 * 185.10093 * 14 13 12 17 17 O 1.21368 * 119.99803 * 359.97438 * 16 14 13 18 18 N 1.34773 * 119.99707 * 180.02562 * 16 14 13 19 19 C 1.46501 * 120.00129 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.47572 * 179.97438 * 19 18 16 21 21 F 1.39897 * 109.47109 * 59.99382 * 20 19 18 22 22 F 1.39897 * 109.47265 * 179.97438 * 20 19 18 23 23 F 1.39906 * 109.46688 * 300.00027 * 20 19 18 24 24 C 1.39565 * 120.32658 * 0.25755 * 12 11 10 25 25 C 1.36325 * 120.16139 * 359.97438 * 24 12 11 26 26 H 0.97001 * 119.99648 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.08701 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.91413 * 179.79785 * 11 10 9 29 29 H 0.96999 * 120.00042 * 214.41951 * 13 12 11 30 30 H 0.97003 * 120.00435 * 359.97438 * 18 16 14 31 31 H 1.09002 * 109.46655 * 299.99533 * 19 18 16 32 32 H 1.09002 * 109.46722 * 59.99188 * 19 18 16 33 33 H 1.08001 * 119.92161 * 180.02562 * 24 12 11 34 34 H 1.07996 * 120.08533 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5399 1.4402 0.7000 7 6 2.0082 -1.2123 -0.0005 8 1 3.0540 -1.2321 0.2683 9 6 1.3475 -2.4080 -0.3522 10 6 0.2142 -2.3709 -1.1889 11 6 -0.4220 -3.5301 -1.5207 12 6 0.0525 -4.7523 -1.0421 13 7 -0.5977 -5.9301 -1.3893 14 6 -1.1614 -6.0549 -2.6071 15 8 -1.0220 -5.1766 -3.4334 16 6 -1.9570 -7.2734 -2.9400 17 8 -2.0958 -8.1518 -2.1140 18 7 -2.5202 -7.3984 -4.1580 19 6 -3.3015 -8.5939 -4.4845 20 6 -3.8260 -8.4847 -5.9176 21 9 -2.7474 -8.3765 -6.8020 22 9 -4.5716 -9.6266 -6.2296 23 9 -4.6382 -7.3513 -6.0318 24 6 1.1772 -4.7972 -0.2169 25 6 1.8208 -3.6457 0.1271 26 1 -0.4850 0.8401 0.0004 27 1 -0.1514 -1.4263 -1.5637 28 1 -1.2926 -3.5030 -2.1592 29 1 -0.6460 -6.6625 -0.7551 30 1 -2.4090 -6.6965 -4.8182 31 1 -2.6688 -9.4769 -4.3951 32 1 -4.1421 -8.6779 -3.7956 33 1 1.5390 -5.7466 0.1495 34 1 2.6912 -3.6819 0.7654 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354869263.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:40 Heat of formation + Delta-G solvation = -218.316299 kcal Electronic energy + Delta-G solvation = -25069.456600 eV Core-core repulsion = 20551.432613 eV Total energy + Delta-G solvation = -4518.023987 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.24679 -48.75290 -48.73259 -41.99341 -40.27945 -38.92421 -36.83944 -36.05476 -34.73854 -31.51445 -31.08735 -30.72958 -27.51633 -25.65251 -24.09682 -23.25635 -22.59425 -21.42548 -20.16997 -19.71326 -19.56990 -19.26633 -18.56859 -18.02326 -17.51283 -17.18089 -16.96582 -16.34495 -15.90784 -15.76658 -15.58111 -15.45259 -15.15227 -15.14235 -14.89011 -14.84993 -14.83257 -14.50876 -14.12580 -13.96799 -13.69434 -13.31433 -13.07160 -13.00409 -12.87190 -12.75087 -12.39799 -11.69391 -11.51431 -11.22070 -10.90221 -10.72052 -10.65399 -9.48953 -8.93256 -8.63721 -6.30187 0.09120 0.86773 1.02618 1.13933 1.40014 1.50813 1.53286 1.57959 2.07217 2.20729 2.43505 2.56249 2.72823 2.89644 3.12512 3.35500 3.71922 4.05233 4.18677 4.40572 4.42740 4.67185 4.90418 5.04162 5.10996 5.23746 5.35633 5.56500 5.66340 5.82998 5.97751 6.07634 6.25116 6.36117 6.58788 6.64612 6.89216 6.91661 7.08534 8.30246 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.027375 B = 0.002475 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.586764 B =11311.051972 C =11953.682739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.488 4.488 8 H 0.082 0.918 9 C 0.078 3.922 10 C -0.180 4.180 11 C -0.091 4.091 12 C -0.010 4.010 13 N -0.606 5.606 14 C 0.488 3.512 15 O -0.538 6.538 16 C 0.536 3.464 17 O -0.522 6.522 18 N -0.697 5.697 19 C 0.077 3.923 20 C 0.456 3.544 21 F -0.182 7.182 22 F -0.170 7.170 23 F -0.183 7.183 24 C -0.089 4.089 25 C -0.225 4.225 26 H 0.289 0.711 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.422 0.578 30 H 0.423 0.577 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.105 -15.105 -8.109 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.517 4.517 8 H 0.100 0.900 9 C 0.075 3.925 10 C -0.200 4.200 11 C -0.111 4.111 12 C -0.103 4.103 13 N -0.251 5.251 14 C 0.270 3.730 15 O -0.415 6.415 16 C 0.316 3.684 17 O -0.398 6.398 18 N -0.352 5.352 19 C -0.047 4.047 20 C 0.401 3.599 21 F -0.164 7.164 22 F -0.151 7.151 23 F -0.165 7.165 24 C -0.109 4.109 25 C -0.245 4.245 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.260 0.740 30 H 0.261 0.739 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.370 -15.004 -8.118 18.583 hybrid contribution 0.043 0.948 -0.323 1.002 sum -7.327 -14.056 -8.440 17.958 Atomic orbital electron populations 1.69872 1.09116 1.30733 1.34867 1.26833 0.95504 1.04740 0.91233 0.85170 0.79178 0.75761 0.79432 1.18953 1.19298 1.17827 1.19872 0.98168 0.92197 1.41488 0.89953 1.18045 0.91860 0.93564 0.88988 1.20880 1.00370 0.96615 1.02147 1.20446 0.99021 0.91910 0.99760 1.17165 0.99000 0.84468 1.09698 1.42515 1.51690 1.16386 1.14495 1.20224 0.82156 0.87692 0.82948 1.90793 1.60070 1.42572 1.48102 1.19576 0.79926 0.86356 0.82499 1.90781 1.59845 1.41271 1.47896 1.45315 1.51996 1.22709 1.15229 1.22790 1.00295 0.90984 0.90661 1.20434 0.75909 0.73962 0.89549 1.93243 1.55294 1.95744 1.72104 1.93239 1.77376 1.50485 1.94025 1.93247 1.74200 1.52209 1.96815 1.20400 0.93271 0.98465 0.98742 1.20824 1.04238 0.92452 1.06961 0.90017 0.88145 0.88360 0.73977 0.73917 0.84255 0.84465 0.84814 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.61 10.95 21.83 0.24 -42.37 16 2 C 0.03 1.61 5.15 85.27 0.44 2.05 16 3 Si 0.98 37.53 29.59 68.60 2.03 39.56 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 6 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 7 C -0.49 -25.69 9.04 23.39 0.21 -25.48 16 8 H 0.08 4.12 7.90 -2.91 -0.02 4.09 16 9 C 0.08 4.15 5.57 -21.27 -0.12 4.03 16 10 C -0.18 -9.65 8.63 22.48 0.19 -9.45 16 11 C -0.09 -4.44 8.57 22.15 0.19 -4.25 16 12 C -0.01 -0.43 6.27 38.66 0.24 -0.19 16 13 N -0.61 -20.40 5.28 -304.52 -1.61 -22.01 16 14 C 0.49 15.91 7.60 87.22 0.66 16.58 16 15 O -0.54 -20.86 14.19 -3.38 -0.05 -20.91 16 16 C 0.54 13.36 7.88 87.22 0.69 14.05 16 17 O -0.52 -13.70 16.48 -3.30 -0.05 -13.75 16 18 N -0.70 -13.11 5.41 -464.58 -2.51 -15.62 16 19 C 0.08 0.93 5.64 86.38 0.49 1.42 16 20 C 0.46 6.09 3.11 71.98 0.22 6.31 16 21 F -0.18 -2.92 17.18 44.97 0.77 -2.15 16 22 F -0.17 -2.24 17.32 44.97 0.78 -1.46 16 23 F -0.18 -3.00 17.18 44.97 0.77 -2.23 16 24 C -0.09 -3.64 9.90 22.14 0.22 -3.42 16 25 C -0.22 -10.46 9.74 22.48 0.22 -10.24 16 26 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 27 H 0.10 5.69 6.18 -2.91 -0.02 5.67 16 28 H 0.10 4.73 6.46 -2.91 -0.02 4.71 16 29 H 0.42 11.70 8.29 -92.71 -0.77 10.93 16 30 H 0.42 8.09 7.83 -92.71 -0.73 7.36 16 31 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -63.00 319.33 3.74 -59.26 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.29 Total: 30.28 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 3.66 Total: -8.61 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -3.88 Total: -80.00 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.10 Total: -34.66 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 2.32 Total: -5.84 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -63.00 3.74 -59.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354869263.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.056 kcal (2) G-P(sol) polarization free energy of solvation -62.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds