Wall clock time and date at job start Tue Mar 31 2020 11:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48502 * 109.46883 * 270.00061 * 3 2 1 5 5 H 1.48507 * 109.47018 * 29.99389 * 3 2 1 6 6 H 1.48496 * 109.47426 * 149.99574 * 3 2 1 7 7 C 1.37882 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00258 * 180.02562 * 10 9 7 12 12 O 1.21543 * 120.00110 * 359.97438 * 11 10 9 13 13 C 1.47856 * 119.99811 * 179.97438 * 11 10 9 14 14 C 1.39625 * 120.50515 * 359.72307 * 13 11 10 15 15 N 1.31691 * 120.83229 * 179.69848 * 14 13 11 16 16 C 1.31813 * 122.01378 * 0.58623 * 15 14 13 17 17 C 1.39404 * 120.91626 * 359.70448 * 16 15 14 18 18 C 1.48404 * 120.47096 * 179.97438 * 17 16 15 19 19 C 1.39334 * 120.10509 * 179.74832 * 18 17 16 20 20 C 1.38002 * 119.88945 * 179.69921 * 19 18 17 21 21 C 1.38438 * 120.10257 * 0.59863 * 20 19 18 22 22 Cl 1.73610 * 119.88989 * 179.69951 * 21 20 19 23 23 C 1.38435 * 120.21889 * 359.67600 * 21 20 19 24 24 C 1.37992 * 120.10733 * 0.02562 * 23 21 20 25 25 C 1.39516 * 119.06012 * 359.97438 * 17 16 15 26 26 H 0.97002 * 119.99804 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47247 * 59.99956 * 9 7 2 28 28 H 1.09004 * 109.47103 * 299.99834 * 9 7 2 29 29 H 0.96999 * 119.99694 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.58017 * 359.97435 * 14 13 11 31 31 H 1.08002 * 119.54386 * 179.67788 * 16 15 14 32 32 H 1.07999 * 120.05815 * 359.97438 * 19 18 17 33 33 H 1.08001 * 119.94601 * 180.27192 * 20 19 18 34 34 H 1.08003 * 119.94897 * 180.02562 * 23 21 20 35 35 H 1.08000 * 120.05532 * 180.02562 * 24 23 21 36 36 H 1.07999 * 120.90820 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5587 -5.1055 0.0006 13 6 2.7144 -6.0072 0.0021 14 6 4.0894 -5.7642 -0.0027 15 7 4.9509 -6.7602 0.0038 16 6 4.5627 -8.0199 0.0037 17 6 3.2088 -8.3521 0.0027 18 6 2.7828 -9.7737 0.0020 19 6 1.4275 -10.0971 0.0063 20 6 1.0363 -11.4205 -0.0007 21 6 1.9880 -12.4259 0.0006 22 17 1.4896 -14.0889 -0.0003 23 6 3.3357 -12.1096 0.0020 24 6 3.7368 -10.7892 0.0028 25 6 2.2600 -7.3292 0.0024 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 3.1566 -3.4355 0.0021 30 1 4.4509 -4.7465 -0.0074 31 1 5.3037 -8.8055 0.0039 32 1 0.6843 -9.3135 0.0106 33 1 -0.0140 -11.6722 -0.0018 34 1 4.0744 -12.8974 0.0026 35 1 4.7884 -10.5434 0.0035 36 1 1.2034 -7.5527 0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427632610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:48 Heat of formation + Delta-G solvation = 9.498386 kcal Electronic energy + Delta-G solvation = -21680.755381 eV Core-core repulsion = 18155.176085 eV Total energy + Delta-G solvation = -3525.579296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.80899 -39.44543 -38.39279 -36.85008 -34.45797 -33.55716 -32.67985 -32.12222 -31.39777 -29.36346 -27.43937 -24.92355 -24.40154 -23.12017 -22.02043 -21.90615 -19.98094 -18.46865 -17.44768 -16.87952 -16.75869 -16.14804 -15.49375 -15.29900 -14.85389 -14.82349 -14.51902 -14.22449 -14.09269 -14.09131 -13.60551 -13.19575 -13.03249 -12.60126 -12.17064 -12.08090 -12.01918 -11.92183 -11.80486 -11.17542 -11.04428 -10.94038 -10.39760 -10.31533 -9.95215 -9.60382 -9.49008 -9.46991 -9.25017 -8.81793 -8.45023 -8.03110 -6.22532 -4.30065 0.10124 0.75889 0.88086 1.38131 1.73883 3.02088 3.21476 3.27812 3.29986 3.39763 3.73866 3.96166 4.06013 4.23051 4.29494 4.35750 4.45252 4.60537 4.70472 4.83476 4.89611 5.07531 5.14009 5.18498 5.24647 5.39937 5.53662 5.70639 5.75802 5.81647 5.98639 6.15643 6.30035 6.38318 7.18711 7.23813 7.41320 7.56609 7.67692 7.88418 8.44146 8.65592 8.89250 9.36439 10.87541 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.034073 B = 0.002158 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.555948 B =12971.515957 C =13777.924410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.700 5.700 11 C 0.543 3.457 12 O -0.547 6.547 13 C -0.166 4.166 14 C 0.134 3.866 15 N -0.482 5.482 16 C 0.124 3.876 17 C -0.113 4.113 18 C -0.030 4.030 19 C -0.097 4.097 20 C -0.104 4.104 21 C -0.036 4.036 22 Cl -0.072 7.072 23 C -0.106 4.106 24 C -0.099 4.099 25 C -0.012 4.012 26 H 0.267 0.733 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.391 0.609 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 -24.509 -0.003 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.348 5.348 11 C 0.327 3.673 12 O -0.427 6.427 13 C -0.172 4.172 14 C -0.023 4.023 15 N -0.189 5.189 16 C -0.033 4.033 17 C -0.115 4.115 18 C -0.031 4.031 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.062 4.062 22 Cl -0.043 7.043 23 C -0.125 4.125 24 C -0.117 4.117 25 C -0.038 4.038 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.225 0.775 30 H 0.182 0.818 31 H 0.178 0.822 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.899 -24.423 0.006 25.669 hybrid contribution -0.116 0.700 -0.011 0.709 sum 7.784 -23.723 -0.004 24.967 Atomic orbital electron populations 1.69970 1.06120 1.27439 1.48611 1.24953 0.94940 0.99518 0.94562 0.86391 0.79630 0.82490 0.78276 1.20409 1.20977 1.19674 1.21197 0.93321 0.90299 1.53624 0.91756 1.19206 0.88202 0.81655 0.98092 1.46455 1.11416 1.05857 1.71091 1.17986 0.87731 0.83097 0.78484 1.90744 1.15945 1.84760 1.51266 1.21307 0.95532 0.95290 1.05043 1.23175 0.88456 0.98977 0.91726 1.67686 1.38742 0.99841 1.12644 1.23021 0.93331 0.93783 0.93207 1.19642 0.94687 0.92505 1.04663 1.18686 0.93425 0.91308 0.99640 1.21310 0.95471 0.96171 0.98530 1.21030 0.99691 0.91499 1.00040 1.21038 0.94395 0.85475 1.05339 1.98379 1.91662 1.17378 1.96883 1.20976 0.94028 0.97006 1.00494 1.21162 0.99746 0.91312 0.99507 1.21817 1.00815 0.90480 0.90653 0.92356 0.95127 0.95125 0.77513 0.81799 0.82246 0.84278 0.84479 0.84579 0.84519 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.48 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.55 -14.37 9.28 -34.44 -0.32 -14.69 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.37 5.43 -5.20 -0.03 6.34 16 10 N -0.70 -14.20 5.50 -62.43 -0.34 -14.54 16 11 C 0.54 10.59 7.78 -12.32 -0.10 10.49 16 12 O -0.55 -12.63 16.41 5.33 0.09 -12.55 16 13 C -0.17 -2.52 5.89 -104.86 -0.62 -3.13 16 14 C 0.13 1.79 10.71 -17.09 -0.18 1.60 16 15 N -0.48 -6.08 10.33 -12.64 -0.13 -6.21 16 16 C 0.12 1.31 10.59 -17.13 -0.18 1.13 16 17 C -0.11 -1.24 5.89 -104.80 -0.62 -1.85 16 18 C -0.03 -0.28 5.88 -104.89 -0.62 -0.89 16 19 C -0.10 -0.88 9.44 -39.26 -0.37 -1.25 16 20 C -0.10 -0.87 9.81 -39.59 -0.39 -1.26 16 21 C -0.04 -0.30 6.32 -39.44 -0.25 -0.55 16 22 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.07 16 23 C -0.11 -0.78 9.81 -39.60 -0.39 -1.17 16 24 C -0.10 -0.75 9.44 -39.26 -0.37 -1.12 16 25 C -0.01 -0.15 9.07 -38.52 -0.35 -0.50 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.39 6.68 6.38 -40.82 -0.26 6.42 16 30 H 0.16 1.91 6.41 -52.49 -0.34 1.57 16 31 H 0.16 1.14 6.21 -52.49 -0.33 0.82 16 32 H 0.14 1.19 6.27 -52.49 -0.33 0.86 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.14 0.71 6.22 -52.49 -0.33 0.38 16 36 H 0.15 1.92 5.99 -52.49 -0.31 1.60 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -31.71 331.91 -9.16 -40.87 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.12 Total: 4.05 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -4.87 Total: -5.22 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.26 Total: -45.49 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.71 -9.16 -40.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427632610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.370 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds