Wall clock time and date at job start Tue Mar 31 2020 11:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48502 * 109.46883 * 270.00061 * 3 2 1 5 5 H 1.48507 * 109.47018 * 29.99389 * 3 2 1 6 6 H 1.48496 * 109.47426 * 149.99574 * 3 2 1 7 7 C 1.37882 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00258 * 180.02562 * 10 9 7 12 12 O 1.21543 * 120.00110 * 359.97438 * 11 10 9 13 13 C 1.47856 * 119.99811 * 179.97438 * 11 10 9 14 14 C 1.39625 * 120.50515 * 359.72307 * 13 11 10 15 15 N 1.31691 * 120.83229 * 179.69848 * 14 13 11 16 16 C 1.31813 * 122.01378 * 0.58623 * 15 14 13 17 17 C 1.39404 * 120.91626 * 359.70448 * 16 15 14 18 18 C 1.48404 * 120.47096 * 179.97438 * 17 16 15 19 19 C 1.39334 * 120.10509 * 179.74832 * 18 17 16 20 20 C 1.38002 * 119.88945 * 179.69921 * 19 18 17 21 21 C 1.38438 * 120.10257 * 0.59863 * 20 19 18 22 22 Cl 1.73610 * 119.88989 * 179.69951 * 21 20 19 23 23 C 1.38435 * 120.21889 * 359.67600 * 21 20 19 24 24 C 1.37992 * 120.10733 * 0.02562 * 23 21 20 25 25 C 1.39516 * 119.06012 * 359.97438 * 17 16 15 26 26 H 0.97002 * 119.99804 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47247 * 59.99956 * 9 7 2 28 28 H 1.09004 * 109.47103 * 299.99834 * 9 7 2 29 29 H 0.96999 * 119.99694 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.58017 * 359.97435 * 14 13 11 31 31 H 1.08002 * 119.54386 * 179.67788 * 16 15 14 32 32 H 1.07999 * 120.05815 * 359.97438 * 19 18 17 33 33 H 1.08001 * 119.94601 * 180.27192 * 20 19 18 34 34 H 1.08003 * 119.94897 * 180.02562 * 23 21 20 35 35 H 1.08000 * 120.05532 * 180.02562 * 24 23 21 36 36 H 1.07999 * 120.90820 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5587 -5.1055 0.0006 13 6 2.7144 -6.0072 0.0021 14 6 4.0894 -5.7642 -0.0027 15 7 4.9509 -6.7602 0.0038 16 6 4.5627 -8.0199 0.0037 17 6 3.2088 -8.3521 0.0027 18 6 2.7828 -9.7737 0.0020 19 6 1.4275 -10.0971 0.0063 20 6 1.0363 -11.4205 -0.0007 21 6 1.9880 -12.4259 0.0006 22 17 1.4896 -14.0889 -0.0003 23 6 3.3357 -12.1096 0.0020 24 6 3.7368 -10.7892 0.0028 25 6 2.2600 -7.3292 0.0024 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 3.1566 -3.4355 0.0021 30 1 4.4509 -4.7465 -0.0074 31 1 5.3037 -8.8055 0.0039 32 1 0.6843 -9.3135 0.0106 33 1 -0.0140 -11.6722 -0.0018 34 1 4.0744 -12.8974 0.0026 35 1 4.7884 -10.5434 0.0035 36 1 1.2034 -7.5527 0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427632610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:48 Heat of formation + Delta-G solvation = -10.034188 kcal Electronic energy + Delta-G solvation = -21681.602377 eV Core-core repulsion = 18155.176085 eV Total energy + Delta-G solvation = -3526.426292 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.83124 -40.44566 -39.64409 -37.48796 -36.29653 -34.62736 -34.29569 -33.32948 -32.10298 -30.25130 -29.26277 -26.17486 -25.29695 -24.52763 -23.19956 -22.76769 -21.44682 -19.66498 -18.63070 -17.89123 -17.73950 -17.64286 -16.83902 -16.47976 -16.34849 -16.05694 -15.78735 -15.16195 -15.12204 -14.82703 -14.61901 -14.45092 -14.07845 -14.01267 -13.93279 -13.46982 -12.94895 -12.86950 -12.74391 -12.71965 -12.46476 -12.23796 -11.79057 -11.51741 -11.30169 -11.19112 -10.82435 -10.65624 -10.55707 -10.09525 -9.92556 -9.19882 -8.29883 -6.46405 -0.73308 -0.29612 0.27522 0.55755 1.11559 1.44433 1.46401 1.57637 1.80152 2.21433 2.44593 2.51503 2.90928 3.05581 3.15423 3.38081 3.63602 3.68438 3.70492 3.83595 3.91039 4.10927 4.23177 4.33037 4.44976 4.64439 4.82013 4.88438 4.96972 5.06759 5.14356 5.20299 5.20844 5.38998 5.43048 5.44700 5.61699 5.71163 5.81491 6.61657 6.69283 6.76575 7.18199 7.32695 8.82147 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.034073 B = 0.002158 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.555948 B =12971.515957 C =13777.924410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.265 3.735 10 N -0.696 5.696 11 C 0.545 3.455 12 O -0.593 6.593 13 C -0.186 4.186 14 C 0.139 3.861 15 N -0.489 5.489 16 C 0.137 3.863 17 C -0.101 4.101 18 C -0.046 4.046 19 C -0.108 4.108 20 C -0.112 4.112 21 C -0.042 4.042 22 Cl -0.070 7.070 23 C -0.106 4.106 24 C -0.089 4.089 25 C -0.020 4.020 26 H 0.269 0.731 27 H -0.007 1.007 28 H -0.007 1.007 29 H 0.408 0.592 30 H 0.177 0.823 31 H 0.203 0.797 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.529 -25.899 0.004 28.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.345 5.345 11 C 0.332 3.668 12 O -0.475 6.475 13 C -0.191 4.191 14 C -0.019 4.019 15 N -0.196 5.196 16 C -0.020 4.020 17 C -0.103 4.103 18 C -0.047 4.047 19 C -0.126 4.126 20 C -0.131 4.131 21 C -0.068 4.068 22 Cl -0.041 7.041 23 C -0.124 4.124 24 C -0.107 4.107 25 C -0.046 4.046 26 H 0.078 0.922 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.245 0.755 30 H 0.194 0.806 31 H 0.219 0.781 32 H 0.152 0.848 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.386 -25.843 0.013 28.240 hybrid contribution -1.210 0.890 -0.014 1.502 sum 10.176 -24.953 -0.001 26.948 Atomic orbital electron populations 1.70131 1.08220 1.28605 1.49813 1.26052 0.95790 1.03867 0.93833 0.85157 0.78531 0.76961 0.78589 1.19632 1.21057 1.17842 1.21603 0.94417 0.90380 1.53074 0.89592 1.18647 0.88574 0.83856 0.94628 1.46132 1.11512 1.05204 1.71685 1.18626 0.87950 0.83670 0.76568 1.90708 1.18284 1.85449 1.53074 1.20854 0.95340 0.94032 1.08900 1.23287 0.87465 1.00057 0.91057 1.67810 1.38199 1.00445 1.13154 1.23714 0.93879 0.93990 0.90425 1.19745 0.94474 0.92765 1.03351 1.18695 0.93900 0.90790 1.01345 1.21377 0.95758 0.96496 0.98979 1.21142 1.00412 0.91322 1.00229 1.21235 0.95024 0.85503 1.05048 1.98383 1.91746 1.17164 1.96841 1.21282 0.94000 0.97668 0.99475 1.21462 1.00772 0.90685 0.97779 1.21891 1.01340 0.90510 0.90864 0.92218 0.98875 0.98873 0.75451 0.80595 0.78065 0.84835 0.83725 0.82231 0.81487 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.98 41.70 29.54 68.60 2.03 43.73 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.56 -29.71 9.28 25.60 0.24 -29.48 16 8 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.27 14.33 5.43 85.63 0.46 14.80 16 10 N -0.70 -29.26 5.50 -469.71 -2.58 -31.84 16 11 C 0.54 22.28 7.78 86.79 0.68 22.95 16 12 O -0.59 -29.24 16.41 -3.85 -0.06 -29.31 16 13 C -0.19 -5.67 5.89 -20.02 -0.12 -5.79 16 14 C 0.14 3.51 10.71 85.05 0.91 4.42 16 15 N -0.49 -10.97 10.33 -193.91 -2.00 -12.97 16 16 C 0.14 2.41 10.59 84.98 0.90 3.31 16 17 C -0.10 -2.03 5.89 -19.98 -0.12 -2.15 16 18 C -0.05 -0.77 5.88 -20.04 -0.12 -0.89 16 19 C -0.11 -1.91 9.44 22.48 0.21 -1.69 16 20 C -0.11 -1.78 9.81 22.26 0.22 -1.56 16 21 C -0.04 -0.61 6.32 22.36 0.14 -0.47 16 22 Cl -0.07 -1.00 28.95 -2.72 -0.08 -1.07 16 23 C -0.11 -1.21 9.81 22.26 0.22 -0.99 16 24 C -0.09 -1.01 9.44 22.48 0.21 -0.80 16 25 C -0.02 -0.53 9.07 22.96 0.21 -0.32 16 26 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H -0.01 -0.41 8.14 -2.38 -0.02 -0.42 16 29 H 0.41 13.99 6.38 -92.71 -0.59 13.39 16 30 H 0.18 3.84 6.41 -2.91 -0.02 3.82 16 31 H 0.20 1.75 6.21 -2.91 -0.02 1.73 16 32 H 0.13 2.41 6.27 -2.91 -0.02 2.39 16 33 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.17 0.79 6.22 -2.91 -0.02 0.78 16 36 H 0.14 3.90 5.99 -2.91 -0.02 3.89 16 Total: -1.00 -71.73 331.91 2.65 -69.08 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.56 Total: 15.36 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.51 Total: 2.04 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -4.30 Total: -99.83 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.06 Total: -29.31 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.07 kcal Total: -71.73 2.65 -69.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427632610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.046 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds