Wall clock time and date at job start Tue Mar 31 2020 11:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21295 * 119.99932 * 2 1 4 4 N 1.34775 * 120.00162 * 180.02562 * 2 1 3 5 5 C 1.40039 * 120.00362 * 184.45259 * 4 2 1 6 6 C 1.38814 * 120.07345 * 325.36679 * 5 4 2 7 7 C 1.38149 * 119.95004 * 179.74588 * 6 5 4 8 8 S 1.76198 * 119.94262 * 180.25303 * 7 6 5 9 9 O 1.42104 * 106.40484 * 23.81621 * 8 7 6 10 10 O 1.42105 * 106.40413 * 156.73268 * 8 7 6 11 11 N 1.65601 * 107.21988 * 270.27466 * 8 7 6 12 12 C 1.46500 * 119.99864 * 64.99634 * 11 8 7 13 13 C 1.50699 * 109.46834 * 165.00003 * 12 11 8 14 14 H 1.08000 * 120.00049 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99846 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99949 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99988 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47191 * 89.99828 * 17 15 13 19 19 H 1.48501 * 109.46905 * 209.99895 * 17 15 13 20 20 H 1.48496 * 109.46981 * 329.99811 * 17 15 13 21 21 C 1.38279 * 120.11377 * 0.52781 * 7 6 5 22 22 C 1.38271 * 120.15446 * 359.72575 * 21 7 6 23 23 C 1.38303 * 120.04557 * 0.02562 * 22 21 7 24 24 F 1.35099 * 120.05836 * 179.97438 * 23 22 21 25 25 H 1.09006 * 109.47063 * 270.00076 * 1 2 3 26 26 H 1.09002 * 109.47303 * 29.99603 * 1 2 3 27 27 H 1.08997 * 109.47137 * 149.99911 * 1 2 3 28 28 H 0.97005 * 119.99705 * 4.72210 * 4 2 1 29 29 H 1.08001 * 120.02576 * 359.97438 * 6 5 4 30 30 H 0.96994 * 119.99937 * 245.00490 * 11 8 7 31 31 H 1.08996 * 109.47588 * 285.00199 * 12 11 8 32 32 H 1.09004 * 109.47255 * 45.00556 * 12 11 8 33 33 H 0.97004 * 120.00039 * 179.97438 * 16 15 13 34 34 H 1.08001 * 119.92532 * 179.70622 * 21 7 6 35 35 H 1.07998 * 119.97342 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5781 -1.1691 0.0936 6 6 4.3168 -0.1556 -0.5014 7 6 5.6948 -0.1571 -0.4025 8 16 6.6318 1.1330 -1.1522 9 8 5.7587 2.2483 -1.2674 10 8 7.8708 1.1845 -0.4583 11 7 6.9809 0.6510 -2.6975 12 6 5.9002 0.4677 -3.6695 13 6 6.4807 0.3944 -5.0582 14 1 7.5480 0.4758 -5.2024 15 6 5.6493 0.2235 -6.1448 16 7 4.3497 0.1239 -5.9692 17 14 6.3689 0.1319 -7.8662 18 1 6.6819 -1.2814 -8.1974 19 1 5.3846 0.6629 -8.8431 20 1 7.6123 0.9415 -7.9266 21 6 6.3402 -1.1725 0.2790 22 6 5.6092 -2.1871 0.8690 23 6 4.2292 -2.1892 0.7784 24 9 3.5147 -3.1807 1.3543 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6983 -2.0058 -0.0701 29 1 3.8145 0.6356 -1.0382 30 1 7.9009 0.4899 -2.9591 31 1 5.3665 -0.4569 -3.4495 32 1 5.2099 1.3091 -3.6082 33 1 3.7648 0.0040 -6.7337 34 1 7.4179 -1.1733 0.3504 35 1 6.1163 -2.9785 1.4009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487358204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:24 Heat of formation + Delta-G solvation = -128.297092 kcal Electronic energy + Delta-G solvation = -24323.996892 eV Core-core repulsion = 20363.716817 eV Total energy + Delta-G solvation = -3960.280075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.23784 -40.52094 -38.46110 -36.71406 -35.32862 -34.99772 -34.63660 -32.16862 -31.20442 -30.82826 -28.71666 -26.75684 -23.74110 -23.10963 -22.50590 -20.78820 -19.34074 -18.41627 -17.63924 -17.27364 -17.16998 -16.53577 -16.21975 -15.89560 -15.76230 -15.33523 -15.18951 -14.55226 -14.28661 -13.82297 -13.62020 -13.41678 -13.31890 -12.92050 -12.80568 -12.59230 -12.33935 -12.12762 -11.86456 -11.82163 -11.56481 -11.44068 -10.96821 -10.86788 -10.76491 -10.58179 -10.13325 -9.98573 -9.44672 -9.20725 -8.92829 -8.40166 -8.25370 -6.19259 -4.23891 0.54128 0.98759 1.06949 2.39375 2.78496 3.21424 3.24204 3.30960 3.34499 3.73076 3.88940 4.24720 4.33323 4.43123 4.56010 4.79997 4.96454 5.01411 5.14338 5.17710 5.24184 5.39691 5.46925 5.67266 5.82729 5.95340 6.08147 6.11684 6.42251 6.72763 7.10514 7.25508 7.32530 7.78320 7.78802 7.91986 8.15733 8.80179 9.41000 10.91021 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.011690 B = 0.004866 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.644322 B = 5752.259030 C = 6671.556670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.508 3.492 3 O -0.512 6.512 4 N -0.672 5.672 5 C 0.091 3.909 6 C 0.013 3.987 7 C -0.663 4.663 8 S 2.690 3.310 9 O -0.952 6.952 10 O -0.977 6.977 11 N -1.101 6.101 12 C 0.245 3.755 13 C -0.529 4.529 14 H 0.067 0.933 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.006 4.006 22 C -0.159 4.159 23 C 0.119 3.881 24 F -0.133 7.133 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.414 0.586 29 H 0.169 0.831 30 H 0.411 0.589 31 H 0.021 0.979 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.152 0.848 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 -7.212 13.200 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.296 3.704 3 O -0.386 6.386 4 N -0.319 5.319 5 C -0.005 4.005 6 C -0.008 4.008 7 C -0.748 4.748 8 S 2.777 3.223 9 O -0.942 6.942 10 O -0.967 6.967 11 N -0.864 5.864 12 C 0.122 3.878 13 C -0.569 4.569 14 H 0.085 0.915 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.026 4.026 22 C -0.179 4.179 23 C 0.097 3.903 24 F -0.112 7.112 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.103 0.897 28 H 0.251 0.749 29 H 0.186 0.814 30 H 0.246 0.754 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.169 0.831 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.842 -5.681 13.597 15.511 hybrid contribution -0.193 -1.712 -0.959 1.971 sum -5.035 -7.392 12.638 15.483 Atomic orbital electron populations 1.21871 0.90114 1.05692 1.05044 1.21141 0.91167 0.82906 0.75182 1.90823 1.70188 1.30964 1.46650 1.43484 1.04116 1.10596 1.73691 1.17720 0.83898 0.97687 1.01147 1.21099 0.91512 0.96432 0.91803 1.31366 1.06758 1.20505 1.16179 1.01988 0.73178 0.74135 0.73013 1.93604 1.67548 1.46979 1.86053 1.93530 1.42612 1.86907 1.73633 1.55457 1.17343 1.87032 1.26532 1.19108 0.84571 0.96902 0.87238 1.21191 0.94042 1.51371 0.90256 0.91508 1.24977 0.94804 0.94826 0.99607 1.69944 1.02731 1.48769 1.31358 0.86401 0.78945 0.78281 0.83230 1.20550 1.21040 1.19646 1.20782 1.00682 0.89982 0.91159 1.21048 0.91186 1.01549 1.04157 1.17672 0.90109 0.87054 0.95473 1.91490 1.78293 1.59306 1.82088 0.88470 0.88032 0.89745 0.74923 0.81378 0.75403 0.96144 0.94216 0.92499 0.83083 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.31 36.01 0.37 -0.93 16 2 C 0.51 6.68 7.79 -10.99 -0.09 6.60 16 3 O -0.51 -9.31 14.52 5.54 0.08 -9.23 16 4 N -0.67 -8.24 5.23 -9.80 -0.05 -8.29 16 5 C 0.09 1.38 6.31 -83.59 -0.53 0.85 16 6 C 0.01 0.22 8.17 -39.40 -0.32 -0.10 16 7 C -0.66 -11.35 5.94 -39.60 -0.24 -11.59 16 8 S 2.69 51.40 5.73 -107.50 -0.62 50.78 16 9 O -0.95 -21.55 16.75 -57.17 -0.96 -22.51 16 10 O -0.98 -18.76 17.28 -57.17 -0.99 -19.75 16 11 N -1.10 -22.19 5.99 -11.66 -0.07 -22.26 16 12 C 0.24 6.04 5.98 -5.19 -0.03 6.01 16 13 C -0.53 -14.05 9.27 -34.44 -0.32 -14.37 16 14 H 0.07 1.69 7.65 -52.49 -0.40 1.28 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 17 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C -0.01 -0.09 9.52 -39.55 -0.38 -0.46 16 22 C -0.16 -1.96 10.02 -39.55 -0.40 -2.36 16 23 C 0.12 1.58 7.31 -39.26 -0.29 1.29 16 24 F -0.13 -1.57 16.96 2.25 0.04 -1.53 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.41 3.57 8.66 -40.82 -0.35 3.22 16 29 H 0.17 3.40 5.76 -52.49 -0.30 3.10 16 30 H 0.41 7.43 8.54 -34.47 -0.29 7.14 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.04 1.07 7.75 -51.93 -0.40 0.67 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.15 1.78 7.61 -52.49 -0.40 1.38 16 35 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 327.58 15.07 4.94 4.94 Total: -1.00 -35.12 327.58 -7.62 -42.74 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.40 Total: 7.43 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.31 Total: -13.49 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.62 Total: -55.00 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -1.87 Total: -51.48 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 51.40 SS G_CDS: -0.62 Total: 50.78 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.12 -7.62 -42.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487358204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.553 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds