Wall clock time and date at job start Tue Mar 31 2020 11:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21295 * 119.99932 * 2 1 4 4 N 1.34775 * 120.00162 * 180.02562 * 2 1 3 5 5 C 1.40039 * 120.00362 * 184.45259 * 4 2 1 6 6 C 1.38814 * 120.07345 * 325.36679 * 5 4 2 7 7 C 1.38149 * 119.95004 * 179.74588 * 6 5 4 8 8 S 1.76198 * 119.94262 * 180.25303 * 7 6 5 9 9 O 1.42104 * 106.40484 * 23.81621 * 8 7 6 10 10 O 1.42105 * 106.40413 * 156.73268 * 8 7 6 11 11 N 1.65601 * 107.21988 * 270.27466 * 8 7 6 12 12 C 1.46500 * 119.99864 * 64.99634 * 11 8 7 13 13 C 1.50699 * 109.46834 * 165.00003 * 12 11 8 14 14 H 1.08000 * 120.00049 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99846 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99949 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99988 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47191 * 89.99828 * 17 15 13 19 19 H 1.48501 * 109.46905 * 209.99895 * 17 15 13 20 20 H 1.48496 * 109.46981 * 329.99811 * 17 15 13 21 21 C 1.38279 * 120.11377 * 0.52781 * 7 6 5 22 22 C 1.38271 * 120.15446 * 359.72575 * 21 7 6 23 23 C 1.38303 * 120.04557 * 0.02562 * 22 21 7 24 24 F 1.35099 * 120.05836 * 179.97438 * 23 22 21 25 25 H 1.09006 * 109.47063 * 270.00076 * 1 2 3 26 26 H 1.09002 * 109.47303 * 29.99603 * 1 2 3 27 27 H 1.08997 * 109.47137 * 149.99911 * 1 2 3 28 28 H 0.97005 * 119.99705 * 4.72210 * 4 2 1 29 29 H 1.08001 * 120.02576 * 359.97438 * 6 5 4 30 30 H 0.96994 * 119.99937 * 245.00490 * 11 8 7 31 31 H 1.08996 * 109.47588 * 285.00199 * 12 11 8 32 32 H 1.09004 * 109.47255 * 45.00556 * 12 11 8 33 33 H 0.97004 * 120.00039 * 179.97438 * 16 15 13 34 34 H 1.08001 * 119.92532 * 179.70622 * 21 7 6 35 35 H 1.07998 * 119.97342 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5781 -1.1691 0.0936 6 6 4.3168 -0.1556 -0.5014 7 6 5.6948 -0.1571 -0.4025 8 16 6.6318 1.1330 -1.1522 9 8 5.7587 2.2483 -1.2674 10 8 7.8708 1.1845 -0.4583 11 7 6.9809 0.6510 -2.6975 12 6 5.9002 0.4677 -3.6695 13 6 6.4807 0.3944 -5.0582 14 1 7.5480 0.4758 -5.2024 15 6 5.6493 0.2235 -6.1448 16 7 4.3497 0.1239 -5.9692 17 14 6.3689 0.1319 -7.8662 18 1 6.6819 -1.2814 -8.1974 19 1 5.3846 0.6629 -8.8431 20 1 7.6123 0.9415 -7.9266 21 6 6.3402 -1.1725 0.2790 22 6 5.6092 -2.1871 0.8690 23 6 4.2292 -2.1892 0.7784 24 9 3.5147 -3.1807 1.3543 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6983 -2.0058 -0.0701 29 1 3.8145 0.6356 -1.0382 30 1 7.9009 0.4899 -2.9591 31 1 5.3665 -0.4569 -3.4495 32 1 5.2099 1.3091 -3.6082 33 1 3.7648 0.0040 -6.7337 34 1 7.4179 -1.1733 0.3504 35 1 6.1163 -2.9785 1.4009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487358204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:23 Heat of formation + Delta-G solvation = -156.567666 kcal Electronic energy + Delta-G solvation = -24325.222796 eV Core-core repulsion = 20363.716817 eV Total energy + Delta-G solvation = -3961.505979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.25776 -41.62057 -39.60889 -38.34792 -36.98355 -36.51856 -36.12359 -34.15461 -32.24764 -31.93104 -29.64215 -28.76403 -24.90731 -24.54180 -24.22426 -21.84964 -20.76477 -19.77694 -19.18592 -18.61124 -18.30672 -17.82525 -17.59382 -17.44071 -17.06116 -16.77666 -16.35782 -16.20575 -15.39768 -15.27856 -14.85174 -14.77245 -14.55508 -14.42563 -14.12963 -13.92305 -13.59871 -13.51229 -13.26965 -13.18318 -13.13891 -12.86010 -12.75353 -12.54855 -12.22619 -12.10581 -11.81930 -11.43371 -11.10856 -10.86622 -10.35220 -10.16809 -9.52958 -8.25585 -6.38429 -0.72700 -0.48502 -0.09409 1.36711 1.44768 1.46498 1.57496 1.81901 1.96743 2.24256 2.42236 2.70458 2.78516 3.09158 3.23914 3.51789 3.69751 3.90280 4.01607 4.18696 4.39734 4.49522 4.57031 4.59560 4.66327 4.80550 4.87830 5.00500 5.09898 5.22754 5.26859 5.59626 5.72704 5.94911 6.18998 6.30729 6.76021 6.95059 7.31390 8.85653 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.011690 B = 0.004866 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.644322 B = 5752.259030 C = 6671.556670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.498 3.502 3 O -0.572 6.572 4 N -0.663 5.663 5 C 0.080 3.920 6 C -0.019 4.019 7 C -0.674 4.674 8 S 2.706 3.294 9 O -0.997 6.997 10 O -0.975 6.975 11 N -1.098 6.098 12 C 0.260 3.740 13 C -0.549 4.549 14 H 0.078 0.922 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.976 3.024 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.263 1.263 21 C -0.006 4.006 22 C -0.142 4.142 23 C 0.131 3.869 24 F -0.118 7.118 25 H 0.124 0.876 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.432 0.568 29 H 0.133 0.867 30 H 0.421 0.579 31 H 0.011 0.989 32 H 0.005 0.995 33 H 0.268 0.732 34 H 0.178 0.822 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 -9.865 13.880 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.289 3.711 3 O -0.450 6.450 4 N -0.311 5.311 5 C -0.016 4.016 6 C -0.041 4.041 7 C -0.763 4.763 8 S 2.797 3.203 9 O -0.987 6.987 10 O -0.966 6.966 11 N -0.860 5.860 12 C 0.135 3.865 13 C -0.588 4.588 14 H 0.096 0.904 15 C -0.193 4.193 16 N -0.565 5.565 17 Si 0.800 3.200 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.188 1.188 21 C -0.026 4.026 22 C -0.161 4.161 23 C 0.109 3.891 24 F -0.096 7.096 25 H 0.142 0.858 26 H 0.115 0.885 27 H 0.134 0.866 28 H 0.272 0.728 29 H 0.151 0.849 30 H 0.258 0.742 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.077 0.923 34 H 0.195 0.805 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -4.308 -8.346 14.267 17.081 hybrid contribution -0.397 -0.968 -1.033 1.470 sum -4.705 -9.314 13.234 16.853 Atomic orbital electron populations 1.21940 0.85618 1.06998 1.07091 1.22237 0.93273 0.82107 0.73494 1.90808 1.71743 1.33081 1.49411 1.43538 1.03234 1.11452 1.72882 1.17825 0.85175 0.97503 1.01122 1.20861 0.92186 0.97252 0.93751 1.30851 1.06245 1.21186 1.18050 1.01176 0.72739 0.73905 0.72480 1.93547 1.68574 1.50060 1.86508 1.93517 1.42699 1.87191 1.73149 1.55213 1.16981 1.87158 1.26669 1.18650 0.85013 0.94887 0.87919 1.21621 0.94796 1.51267 0.91151 0.90384 1.25938 0.95107 0.94247 1.04012 1.70077 1.04166 1.49599 1.32696 0.85284 0.78223 0.78784 0.77724 1.19345 1.20980 1.18763 1.21161 1.02101 0.89166 0.90168 1.21522 0.90613 1.01465 1.02509 1.17681 0.90618 0.86422 0.94418 1.91535 1.78123 1.58414 1.81577 0.85825 0.88505 0.86600 0.72761 0.84932 0.74245 0.97099 0.97734 0.92288 0.80460 0.78947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 10.31 71.24 0.73 -1.51 16 2 C 0.50 13.42 7.79 87.66 0.68 14.10 16 3 O -0.57 -22.38 14.52 -3.08 -0.04 -22.42 16 4 N -0.66 -16.02 5.23 -303.32 -1.59 -17.61 16 5 C 0.08 2.41 6.31 38.16 0.24 2.66 16 6 C -0.02 -0.71 8.17 22.39 0.18 -0.53 16 7 C -0.67 -23.50 5.94 22.26 0.13 -23.36 16 8 S 2.71 107.38 5.73 -56.49 -0.32 107.06 16 9 O -1.00 -48.46 16.75 -128.00 -2.14 -50.61 16 10 O -0.98 -37.33 17.28 -128.00 -2.21 -39.54 16 11 N -1.10 -45.67 5.99 -190.79 -1.14 -46.81 16 12 C 0.26 13.43 5.98 85.63 0.51 13.94 16 13 C -0.55 -29.63 9.27 25.60 0.24 -29.39 16 14 H 0.08 3.92 7.65 -2.91 -0.02 3.90 16 15 C 0.01 0.38 5.46 84.66 0.46 0.84 16 16 N -0.93 -53.70 13.29 21.45 0.28 -53.41 16 17 Si 0.98 42.21 29.54 68.60 2.03 44.23 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 21 C -0.01 -0.16 9.52 22.29 0.21 0.05 16 22 C -0.14 -2.97 10.02 22.29 0.22 -2.74 16 23 C 0.13 3.14 7.31 22.48 0.16 3.30 16 24 F -0.12 -2.36 16.96 44.97 0.76 -1.60 16 25 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.43 6.75 8.66 -92.70 -0.80 5.94 16 29 H 0.13 5.96 5.76 -2.91 -0.02 5.95 16 30 H 0.42 15.35 8.54 -96.75 -0.83 14.53 16 31 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.00 0.27 7.75 -2.38 -0.02 0.25 16 33 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.18 3.61 7.61 -2.91 -0.02 3.59 16 35 H 0.19 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -80.04 327.58 -1.06 -81.10 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -0.46 Total: 22.26 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 3.78 Total: -22.65 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -2.44 Total: -117.83 kcal Atomic # 8 Polarization: -108.17 SS G_CDS: -4.40 Total: -112.57 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.76 Total: -1.60 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 107.38 SS G_CDS: -0.32 Total: 107.06 kcal Total: -80.04 -1.06 -81.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487358204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.471 kcal (2) G-P(sol) polarization free energy of solvation -80.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds