Wall clock time and date at job start Tue Mar 31 2020 11:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47065 * 16.11280 * 3 2 1 5 5 C 1.36942 * 120.00359 * 86.83688 * 4 3 2 6 6 H 1.07995 * 119.99904 * 173.10300 * 5 4 3 7 7 C 1.38807 * 119.99523 * 352.83214 * 5 4 3 8 8 N 1.31619 * 120.00245 * 335.44080 * 7 5 4 9 9 Si 1.86806 * 119.99900 * 155.44148 * 7 5 4 10 10 H 1.48498 * 109.46890 * 59.99783 * 9 7 5 11 11 H 1.48505 * 109.46975 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47152 * 299.99758 * 9 7 5 13 13 S 1.65598 * 120.00074 * 266.83025 * 4 3 2 14 14 O 1.42100 * 106.40007 * 23.54551 * 13 4 3 15 15 O 1.42102 * 106.40405 * 156.46003 * 13 4 3 16 16 C 1.76191 * 107.22341 * 270.00399 * 13 4 3 17 17 C 1.39357 * 119.56903 * 269.73077 * 16 13 4 18 18 C 1.36080 * 121.06728 * 179.68549 * 17 16 13 19 19 C 1.40592 * 119.74982 * 0.59754 * 18 17 16 20 20 N 1.33678 * 121.08393 * 179.67851 * 19 18 17 21 21 C 1.31084 * 121.32367 * 180.02562 * 20 19 18 22 22 C 1.39331 * 121.75212 * 359.97438 * 21 20 19 23 23 C 1.36582 * 119.93074 * 0.02562 * 22 21 20 24 24 C 1.40771 * 118.15188 * 359.97438 * 23 22 21 25 25 C 1.36151 * 119.56589 * 89.99736 * 16 13 4 26 26 H 4.40639 * 5.51402 * 180.02562 * 4 1 2 27 27 H 1.08989 * 109.47132 * 256.10919 * 3 2 1 28 28 H 1.09004 * 109.46850 * 136.10788 * 3 2 1 29 29 H 0.96998 * 120.00252 * 179.97438 * 8 7 5 30 30 H 1.08000 * 119.46380 * 359.96774 * 17 16 13 31 31 H 1.08002 * 120.12480 * 180.27778 * 18 17 16 32 32 H 1.08000 * 119.12509 * 180.02562 * 21 20 19 33 33 H 1.07997 * 120.03739 * 179.97438 * 22 21 20 34 34 H 1.07991 * 120.92339 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.19156 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3261 -0.3833 5 6 3.3016 -1.6386 -1.7061 6 1 3.7656 -2.5728 -1.9860 7 6 2.8691 -0.7571 -2.6873 8 7 1.9080 0.1023 -2.4226 9 14 3.6510 -0.7906 -4.3835 10 1 3.4542 -2.1304 -4.9928 11 1 3.0156 0.2413 -5.2419 12 1 5.1043 -0.5096 -4.2642 13 16 3.4862 -2.4479 0.7830 14 8 2.7302 -2.0844 1.9300 15 8 3.3874 -3.7205 0.1585 16 6 5.1808 -2.2366 1.2166 17 6 6.1605 -2.9518 0.5305 18 6 7.4787 -2.8073 0.8359 19 6 7.8641 -1.9334 1.8675 20 7 9.1508 -1.7759 2.1940 21 6 9.5154 -0.9627 3.1553 22 6 8.5849 -0.2236 3.8827 23 6 7.2534 -0.3373 3.6005 24 6 6.8658 -1.2116 2.5674 25 6 5.5155 -1.3809 2.2213 26 1 -1.0498 -0.0003 -0.0003 27 1 3.0092 0.2475 0.9975 28 1 3.0090 0.7414 -0.7125 29 1 1.6060 0.7186 -3.1081 30 1 5.8691 -3.6283 -0.2594 31 1 8.2256 -3.3659 0.2913 32 1 10.5650 -0.8624 3.3892 33 1 8.9160 0.4380 4.6695 34 1 6.5184 0.2276 4.1544 35 1 4.7470 -0.8357 2.7489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490876257.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:37 Heat of formation + Delta-G solvation = 64.381041 kcal Electronic energy + Delta-G solvation = -23622.807838 eV Core-core repulsion = 20101.652139 eV Total energy + Delta-G solvation = -3521.155699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.76301 -37.02430 -36.39726 -36.21167 -34.89597 -33.54556 -31.83368 -31.07542 -30.59308 -30.03344 -26.53202 -24.51910 -23.86513 -23.63546 -22.13225 -19.15278 -18.23792 -17.93684 -17.67448 -16.89848 -16.71606 -16.34828 -15.44960 -14.84408 -14.54689 -14.39600 -14.31757 -14.01671 -13.62024 -13.35776 -13.20383 -13.11386 -12.54487 -12.42540 -11.86283 -11.72267 -11.50890 -11.35402 -11.15556 -10.97110 -10.95484 -10.62798 -10.55476 -10.36388 -10.23043 -9.68269 -9.54782 -9.15791 -8.89972 -8.77821 -8.33239 -8.21026 -6.34734 -3.87887 0.25424 0.71168 1.26927 1.95899 2.76044 3.19122 3.24094 3.26645 3.75683 4.06472 4.14362 4.21924 4.29826 4.46401 4.52822 4.64884 4.66735 4.77212 4.92174 4.97838 5.11592 5.29458 5.35534 5.56351 5.64602 5.73927 5.81726 5.96729 6.04248 6.08199 6.27242 6.36635 6.48368 6.70560 6.87662 6.98497 7.25071 7.46523 7.81383 8.26187 8.79048 9.02307 9.16672 10.61375 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.004972 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.783420 B = 5630.341435 C = 6251.209025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.095 4.095 3 C 0.250 3.750 4 N -0.829 5.829 5 C -0.318 4.318 6 H 0.114 0.886 7 C 0.047 3.953 8 N -0.842 5.842 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 S 2.637 3.363 14 O -0.975 6.975 15 O -0.961 6.961 16 C -0.664 4.664 17 C -0.013 4.013 18 C -0.119 4.119 19 C 0.156 3.844 20 N -0.483 5.483 21 C 0.138 3.862 22 C -0.192 4.192 23 C -0.041 4.041 24 C -0.127 4.127 25 C 0.009 3.991 26 H 0.198 0.802 27 H 0.060 0.940 28 H 0.107 0.893 29 H 0.270 0.730 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.158 0.842 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 2.391 8.811 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.098 4.098 3 C 0.124 3.876 4 N -0.659 5.659 5 C -0.451 4.451 6 H 0.131 0.869 7 C -0.161 4.161 8 N -0.480 5.480 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.199 1.199 13 S 2.726 3.274 14 O -0.965 6.965 15 O -0.951 6.951 16 C -0.743 4.743 17 C -0.034 4.034 18 C -0.138 4.138 19 C 0.035 3.965 20 N -0.191 5.191 21 C -0.034 4.034 22 C -0.211 4.211 23 C -0.067 4.067 24 C -0.130 4.130 25 C -0.011 4.011 26 H 0.215 0.785 27 H 0.078 0.922 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.175 0.825 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.942 1.341 8.635 13.236 hybrid contribution 0.310 0.977 -0.570 1.173 sum 10.252 2.318 8.065 13.248 Atomic orbital electron populations 1.24169 0.95299 1.01805 1.07315 1.22843 0.94055 0.98456 0.94443 1.17833 0.84956 0.87006 0.97784 1.53413 1.69490 1.25919 1.17126 1.19304 1.40756 1.05572 0.79490 0.86864 1.25081 0.95132 0.96488 0.99407 1.70176 1.21365 1.21459 1.35045 0.86359 0.79839 0.78403 0.82371 1.19680 1.20968 1.19877 1.04819 0.75185 0.74620 0.72772 1.93487 1.68843 1.84223 1.49953 1.93467 1.86283 1.39441 1.75872 1.32046 1.30046 1.06514 1.05673 1.20611 0.91591 0.94893 0.96286 1.20828 0.96540 0.99149 0.97304 1.18992 0.88146 0.94646 0.94719 1.68094 1.17525 1.17969 1.15481 1.23005 1.00275 0.90218 0.89942 1.21845 0.93959 1.02689 1.02654 1.21581 0.96817 0.94376 0.93938 1.18966 0.95076 1.00097 0.98874 1.20879 0.94814 0.92804 0.92624 0.78533 0.92221 0.87505 0.91877 0.83699 0.84378 0.82464 0.84488 0.84033 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 61. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.85 19.25 29.55 0.57 -5.28 16 2 C -0.10 -2.23 11.24 -37.12 -0.42 -2.65 16 3 C 0.25 5.50 5.10 -6.83 -0.03 5.47 16 4 N -0.83 -19.23 2.88 -62.78 -0.18 -19.42 16 5 C -0.32 -7.84 9.38 -15.06 -0.14 -7.98 16 6 H 0.11 2.75 7.40 -52.49 -0.39 2.36 16 7 C 0.05 1.15 4.93 -17.43 -0.09 1.07 16 8 N -0.84 -21.08 8.94 55.49 0.50 -20.59 16 9 Si 0.90 19.11 29.62 -169.99 -5.04 14.07 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 13 S 2.64 57.09 5.59 -107.50 -0.60 56.49 16 14 O -0.98 -22.02 16.22 -57.17 -0.93 -22.95 16 15 O -0.96 -23.02 16.10 -57.17 -0.92 -23.94 16 16 C -0.66 -12.21 5.94 -39.92 -0.24 -12.45 16 17 C -0.01 -0.23 9.42 -39.94 -0.38 -0.60 16 18 C -0.12 -1.90 9.98 -39.47 -0.39 -2.29 16 19 C 0.16 2.50 6.60 -84.86 -0.56 1.94 16 20 N -0.48 -7.03 10.34 -10.97 -0.11 -7.14 16 21 C 0.14 1.52 11.15 -17.46 -0.19 1.32 16 22 C -0.19 -1.87 10.03 -39.77 -0.40 -2.27 16 23 C -0.04 -0.48 9.90 -39.22 -0.39 -0.86 16 24 C -0.13 -1.93 5.74 -106.80 -0.61 -2.55 16 25 C 0.01 0.14 9.22 -39.51 -0.36 -0.22 16 26 H 0.20 3.53 7.80 -54.10 -0.42 3.11 16 27 H 0.06 1.12 7.67 -51.94 -0.40 0.72 16 28 H 0.11 2.40 6.42 -51.93 -0.33 2.06 16 29 H 0.27 6.49 8.31 -40.82 -0.34 6.16 16 30 H 0.15 2.39 7.56 -52.49 -0.40 1.99 16 31 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.14 2.08 7.55 -52.49 -0.40 1.69 16 LS Contribution 323.85 15.07 4.88 4.88 Total: -1.00 -31.52 323.85 -9.20 -40.72 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -3.16 Total: 5.23 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -3.64 Total: -27.36 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.20 Total: -47.15 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -1.85 Total: -46.89 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.04 Total: 14.07 kcal Atomic # 16 Polarization: 57.09 SS G_CDS: -0.60 Total: 56.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.52 -9.20 -40.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490876257.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.102 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds