Wall clock time and date at job start Tue Mar 31 2020 11:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47065 * 16.11280 * 3 2 1 5 5 C 1.36942 * 120.00359 * 86.83688 * 4 3 2 6 6 H 1.07995 * 119.99904 * 173.10300 * 5 4 3 7 7 C 1.38807 * 119.99523 * 352.83214 * 5 4 3 8 8 N 1.31619 * 120.00245 * 335.44080 * 7 5 4 9 9 Si 1.86806 * 119.99900 * 155.44148 * 7 5 4 10 10 H 1.48498 * 109.46890 * 59.99783 * 9 7 5 11 11 H 1.48505 * 109.46975 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47152 * 299.99758 * 9 7 5 13 13 S 1.65598 * 120.00074 * 266.83025 * 4 3 2 14 14 O 1.42100 * 106.40007 * 23.54551 * 13 4 3 15 15 O 1.42102 * 106.40405 * 156.46003 * 13 4 3 16 16 C 1.76191 * 107.22341 * 270.00399 * 13 4 3 17 17 C 1.39357 * 119.56903 * 269.73077 * 16 13 4 18 18 C 1.36080 * 121.06728 * 179.68549 * 17 16 13 19 19 C 1.40592 * 119.74982 * 0.59754 * 18 17 16 20 20 N 1.33678 * 121.08393 * 179.67851 * 19 18 17 21 21 C 1.31084 * 121.32367 * 180.02562 * 20 19 18 22 22 C 1.39331 * 121.75212 * 359.97438 * 21 20 19 23 23 C 1.36582 * 119.93074 * 0.02562 * 22 21 20 24 24 C 1.40771 * 118.15188 * 359.97438 * 23 22 21 25 25 C 1.36151 * 119.56589 * 89.99736 * 16 13 4 26 26 H 4.40639 * 5.51402 * 180.02562 * 4 1 2 27 27 H 1.08989 * 109.47132 * 256.10919 * 3 2 1 28 28 H 1.09004 * 109.46850 * 136.10788 * 3 2 1 29 29 H 0.96998 * 120.00252 * 179.97438 * 8 7 5 30 30 H 1.08000 * 119.46380 * 359.96774 * 17 16 13 31 31 H 1.08002 * 120.12480 * 180.27778 * 18 17 16 32 32 H 1.08000 * 119.12509 * 180.02562 * 21 20 19 33 33 H 1.07997 * 120.03739 * 179.97438 * 22 21 20 34 34 H 1.07991 * 120.92339 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.19156 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3261 -0.3833 5 6 3.3016 -1.6386 -1.7061 6 1 3.7656 -2.5728 -1.9860 7 6 2.8691 -0.7571 -2.6873 8 7 1.9080 0.1023 -2.4226 9 14 3.6510 -0.7906 -4.3835 10 1 3.4542 -2.1304 -4.9928 11 1 3.0156 0.2413 -5.2419 12 1 5.1043 -0.5096 -4.2642 13 16 3.4862 -2.4479 0.7830 14 8 2.7302 -2.0844 1.9300 15 8 3.3874 -3.7205 0.1585 16 6 5.1808 -2.2366 1.2166 17 6 6.1605 -2.9518 0.5305 18 6 7.4787 -2.8073 0.8359 19 6 7.8641 -1.9334 1.8675 20 7 9.1508 -1.7759 2.1940 21 6 9.5154 -0.9627 3.1553 22 6 8.5849 -0.2236 3.8827 23 6 7.2534 -0.3373 3.6005 24 6 6.8658 -1.2116 2.5674 25 6 5.5155 -1.3809 2.2213 26 1 -1.0498 -0.0003 -0.0003 27 1 3.0092 0.2475 0.9975 28 1 3.0090 0.7414 -0.7125 29 1 1.6060 0.7186 -3.1081 30 1 5.8691 -3.6283 -0.2594 31 1 8.2256 -3.3659 0.2913 32 1 10.5650 -0.8624 3.3892 33 1 8.9160 0.4380 4.6695 34 1 6.5184 0.2276 4.1544 35 1 4.7470 -0.8357 2.7489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490876257.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:35 Heat of formation + Delta-G solvation = 43.748793 kcal Electronic energy + Delta-G solvation = -23623.702520 eV Core-core repulsion = 20101.652139 eV Total energy + Delta-G solvation = -3522.050381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.83923 -38.24314 -38.19879 -37.92629 -36.78098 -34.58536 -33.56202 -32.80353 -31.73840 -31.21048 -28.24960 -25.73089 -25.51090 -24.79923 -23.27811 -20.72903 -19.81624 -19.57651 -18.92188 -18.43809 -18.04421 -17.92092 -16.68695 -16.46109 -16.19070 -15.62447 -15.49504 -15.29674 -15.16117 -14.97936 -14.52877 -14.25005 -14.07127 -13.56100 -13.44862 -13.21549 -13.12684 -13.07590 -12.80504 -12.64813 -12.62372 -12.31888 -11.98994 -11.94153 -11.64580 -11.35111 -10.90951 -10.56092 -10.50685 -10.09750 -9.95903 -9.47764 -8.07566 -5.75140 -0.88770 -0.46262 -0.34551 0.85070 1.49123 1.50980 1.56730 1.61347 2.09397 2.41902 2.54629 2.73396 2.85509 3.01484 3.16928 3.23533 3.36517 3.52524 3.73597 3.91420 3.99455 4.03429 4.05766 4.24114 4.41940 4.46881 4.64285 4.83119 4.84665 4.94539 4.99843 5.09071 5.16879 5.30982 5.46323 5.56540 5.70823 5.73295 6.48717 6.82776 7.04682 7.29336 7.40034 8.89003 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.004972 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.783420 B = 5630.341435 C = 6251.209025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.136 4.136 3 C 0.253 3.747 4 N -0.860 5.860 5 C -0.350 4.350 6 H 0.103 0.897 7 C 0.006 3.994 8 N -0.882 5.882 9 Si 0.963 3.037 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.269 1.269 13 S 2.683 3.317 14 O -0.989 6.989 15 O -0.993 6.993 16 C -0.674 4.674 17 C -0.035 4.035 18 C -0.118 4.118 19 C 0.142 3.858 20 N -0.513 5.513 21 C 0.148 3.852 22 C -0.172 4.172 23 C -0.045 4.045 24 C -0.146 4.146 25 C 0.020 3.980 26 H 0.228 0.772 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.264 0.736 30 H 0.141 0.859 31 H 0.155 0.845 32 H 0.199 0.801 33 H 0.185 0.815 34 H 0.174 0.826 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.971 3.541 11.736 17.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.139 4.139 3 C 0.127 3.873 4 N -0.691 5.691 5 C -0.479 4.479 6 H 0.120 0.880 7 C -0.197 4.197 8 N -0.521 5.521 9 Si 0.788 3.212 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.194 1.194 13 S 2.777 3.223 14 O -0.979 6.979 15 O -0.984 6.984 16 C -0.762 4.762 17 C -0.056 4.056 18 C -0.137 4.137 19 C 0.021 3.979 20 N -0.222 5.222 21 C -0.024 4.024 22 C -0.192 4.192 23 C -0.071 4.071 24 C -0.149 4.149 25 C 0.000 4.000 26 H 0.245 0.755 27 H 0.105 0.895 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.159 0.841 31 H 0.172 0.828 32 H 0.216 0.784 33 H 0.202 0.798 34 H 0.191 0.809 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 12.897 2.508 11.455 17.430 hybrid contribution -0.295 0.528 -0.962 1.137 sum 12.602 3.036 10.492 16.677 Atomic orbital electron populations 1.25058 0.96447 1.00815 1.06490 1.23650 0.95396 0.99499 0.95339 1.17974 0.84357 0.86087 0.98852 1.52940 1.75004 1.24789 1.16384 1.19270 1.41393 1.06683 0.80545 0.87983 1.25635 0.95411 0.96931 1.01704 1.70289 1.23436 1.23096 1.35261 0.85476 0.79039 0.77728 0.78974 1.20191 1.21053 1.19398 1.01678 0.75293 0.73115 0.72201 1.93477 1.69563 1.84235 1.50674 1.93441 1.87117 1.41059 1.76739 1.30866 1.25892 1.10444 1.08969 1.20593 0.92341 0.95738 0.96881 1.20991 0.95983 0.99222 0.97529 1.19195 0.89325 0.94626 0.94715 1.68164 1.16501 1.20013 1.17528 1.23891 1.02701 0.87914 0.87864 1.22390 0.92750 1.01615 1.02397 1.22021 0.98708 0.93531 0.92807 1.19162 0.93949 1.01396 1.00372 1.21177 0.96477 0.91143 0.91231 0.75494 0.89524 0.88281 0.92614 0.84103 0.82774 0.78397 0.79763 0.80873 0.81994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.00 19.25 74.32 1.43 -10.57 16 2 C -0.14 -6.57 11.24 31.13 0.35 -6.22 16 3 C 0.25 11.48 5.10 84.57 0.43 11.91 16 4 N -0.86 -41.37 2.88 -352.53 -1.02 -42.39 16 5 C -0.35 -18.20 9.38 84.03 0.79 -17.42 16 6 H 0.10 5.30 7.40 -2.91 -0.02 5.28 16 7 C 0.01 0.33 4.93 84.86 0.42 0.75 16 8 N -0.88 -46.39 8.94 21.65 0.19 -46.20 16 9 Si 0.96 41.24 29.62 68.60 2.03 43.28 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 S 2.68 118.68 5.59 -56.49 -0.32 118.36 16 14 O -0.99 -44.68 16.22 -128.00 -2.08 -46.76 16 15 O -0.99 -49.40 16.10 -128.00 -2.06 -51.46 16 16 C -0.67 -24.71 5.94 22.05 0.13 -24.58 16 17 C -0.03 -1.21 9.42 22.04 0.21 -1.01 16 18 C -0.12 -3.67 9.98 22.34 0.22 -3.45 16 19 C 0.14 4.22 6.60 40.29 0.27 4.49 16 20 N -0.51 -13.16 10.34 -188.64 -1.95 -15.11 16 21 C 0.15 2.44 11.15 85.07 0.95 3.38 16 22 C -0.17 -2.25 10.03 22.15 0.22 -2.03 16 23 C -0.05 -0.81 9.90 22.50 0.22 -0.59 16 24 C -0.15 -3.98 5.74 -21.28 -0.12 -4.10 16 25 C 0.02 0.61 9.22 22.31 0.21 0.82 16 26 H 0.23 8.08 7.80 -4.43 -0.03 8.05 16 27 H 0.09 3.28 7.67 -2.39 -0.02 3.26 16 28 H 0.10 4.66 6.42 -2.39 -0.02 4.65 16 29 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 30 H 0.14 4.88 7.56 -2.91 -0.02 4.86 16 31 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 32 H 0.20 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 34 H 0.17 1.98 8.06 -2.92 -0.02 1.96 16 35 H 0.16 4.29 7.55 -2.91 -0.02 4.26 16 Total: -1.00 -72.14 323.85 1.65 -70.49 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 1.12 Total: 18.40 kcal Atomic # 6 Polarization: -54.33 SS G_CDS: 5.72 Total: -48.61 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -2.77 Total: -103.69 kcal Atomic # 8 Polarization: -94.09 SS G_CDS: -4.14 Total: -98.23 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 118.68 SS G_CDS: -0.32 Total: 118.36 kcal Total: -72.14 1.65 -70.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490876257.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.239 kcal (2) G-P(sol) polarization free energy of solvation -72.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds