Wall clock time and date at job start Tue Mar 31 2020 11:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21348 * 119.99801 * 2 1 4 4 C 1.46275 * 119.99577 * 180.02562 * 2 1 3 5 5 C 1.37041 * 125.17701 * 179.97438 * 4 2 1 6 6 C 1.36626 * 114.68859 * 179.97438 * 5 4 2 7 7 C 1.36736 * 114.78404 * 359.97438 * 6 5 4 8 8 C 1.47232 * 125.14097 * 179.97438 * 7 6 5 9 9 O 1.21608 * 120.00218 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99706 * 180.02562 * 8 7 6 11 11 C 1.39341 * 119.99694 * 175.13347 * 10 8 7 12 12 C 1.38637 * 119.58476 * 184.92258 * 11 10 8 13 13 C 1.40802 * 118.79670 * 179.71143 * 12 11 10 14 14 C 1.41539 * 120.99676 * 180.27710 * 13 12 11 15 15 H 1.08004 * 120.00060 * 203.97425 * 14 13 12 16 16 C 1.40030 * 120.00251 * 23.98008 * 14 13 12 17 17 N 1.30743 * 119.99555 * 16.67249 * 16 14 13 18 18 Si 1.86797 * 120.00455 * 196.67073 * 16 14 13 19 19 H 1.48498 * 109.46819 * 59.99794 * 18 16 14 20 20 H 1.48499 * 109.47266 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47110 * 300.00353 * 18 16 14 22 22 C 1.41185 * 118.00530 * 0.54529 * 13 12 11 23 23 C 1.37585 * 119.02335 * 359.73393 * 22 13 12 24 24 N 1.32075 * 121.11431 * 359.97438 * 23 22 13 25 25 S 1.75829 * 125.18053 * 359.97438 * 4 2 1 26 26 H 1.09000 * 109.47375 * 240.00088 * 1 2 3 27 27 H 1.09004 * 109.46855 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47139 * 119.99429 * 1 2 3 29 29 H 1.08005 * 122.65316 * 0.27235 * 5 4 2 30 30 H 1.07999 * 122.60302 * 179.97438 * 6 5 4 31 31 H 0.96993 * 120.00057 * 355.12791 * 10 8 7 32 32 H 1.08006 * 120.59845 * 359.97438 * 12 11 10 33 33 H 0.97001 * 119.99979 * 180.02562 * 17 16 14 34 34 H 1.08006 * 120.48822 * 179.75630 * 22 13 12 35 35 H 1.08005 * 119.44364 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0509 0.0000 4 6 2.2383 -1.2668 -0.0006 5 6 3.6031 -1.3906 -0.0011 6 6 4.0594 -2.6784 -0.0010 7 6 3.0806 -3.6333 0.0002 8 6 3.3147 -5.0868 0.0000 9 8 4.4512 -5.5197 -0.0009 10 7 2.2695 -5.9377 0.0007 11 6 2.4883 -7.3101 -0.1019 12 6 1.4056 -8.1700 -0.2035 13 6 1.6460 -9.5531 -0.3125 14 6 0.5756 -10.4723 -0.4247 15 1 0.7134 -11.5009 -0.1255 16 6 -0.6622 -10.0483 -0.9237 17 7 -0.7505 -8.9221 -1.5819 18 14 -2.1871 -11.0916 -0.6492 19 1 -2.4230 -11.2495 0.8084 20 1 -3.3604 -10.4267 -1.2709 21 1 -1.9902 -12.4280 -1.2663 22 6 2.9865 -9.9960 -0.3008 23 6 3.9954 -9.0671 -0.1900 24 7 3.7281 -7.7771 -0.0957 25 16 1.5001 -2.8627 -0.0006 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8901 29 1 4.2656 -0.5376 0.0031 30 1 5.1113 -2.9231 -0.0018 31 1 1.3650 -5.5949 0.0727 32 1 0.3963 -7.7857 -0.2034 33 1 -1.6079 -8.6281 -1.9273 34 1 3.2166 -11.0484 -0.3780 35 1 5.0234 -9.3984 -0.1807 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532435633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:43 Heat of formation + Delta-G solvation = -0.022163 kcal Electronic energy + Delta-G solvation = -22133.308546 eV Core-core repulsion = 18609.360115 eV Total energy + Delta-G solvation = -3523.948432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.89861 -39.62528 -38.09659 -36.94568 -34.48230 -33.89296 -31.53683 -30.66715 -29.75709 -28.45248 -26.11221 -25.60480 -22.47136 -22.03757 -21.37767 -20.36672 -19.07233 -18.14172 -17.75674 -16.47328 -16.09771 -15.69218 -15.42698 -15.26229 -14.91123 -14.81928 -14.34051 -14.30345 -13.87042 -13.51259 -13.03989 -12.92239 -12.74195 -12.67781 -12.53434 -12.39134 -12.24023 -11.52850 -11.29145 -11.27558 -10.97782 -10.41882 -10.32312 -10.24456 -9.94146 -9.73018 -9.44082 -9.05615 -8.88682 -8.10673 -7.86942 -7.16748 -6.91082 -4.70135 -0.20724 1.11195 1.50008 1.65753 2.44879 2.65573 2.72589 2.95740 2.98417 3.16505 3.30889 3.54905 3.67812 3.78103 4.57877 4.63856 4.77929 4.96316 5.01030 5.01495 5.17308 5.52836 5.57892 5.69533 5.81800 5.94031 6.05211 6.42549 6.51305 6.70956 6.83436 7.00367 7.09281 7.25741 7.32863 7.59980 7.79056 8.05502 8.28206 8.54504 8.64234 8.68537 9.55846 9.97602 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.003294 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.925767 B = 8499.253097 C =10108.747294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.425 3.575 3 O -0.452 6.452 4 C -0.283 4.283 5 C -0.061 4.061 6 C -0.088 4.088 7 C -0.205 4.205 8 C 0.567 3.433 9 O -0.457 6.457 10 N -0.649 5.649 11 C 0.335 3.665 12 C -0.240 4.240 13 C 0.144 3.856 14 C -0.454 4.454 15 H 0.083 0.917 16 C 0.079 3.921 17 N -0.786 5.786 18 Si 0.913 3.087 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.282 4.282 23 C 0.121 3.879 24 N -0.556 5.556 25 S 0.207 5.793 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.156 0.844 30 H 0.160 0.840 31 H 0.405 0.595 32 H 0.129 0.871 33 H 0.284 0.716 34 H 0.104 0.896 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 12.846 2.283 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.302 3.698 3 O -0.328 6.328 4 C -0.402 4.402 5 C -0.094 4.094 6 C -0.120 4.120 7 C -0.327 4.327 8 C 0.350 3.650 9 O -0.328 6.328 10 N -0.295 5.295 11 C 0.111 3.889 12 C -0.266 4.266 13 C 0.136 3.864 14 C -0.485 4.485 15 H 0.101 0.899 16 C -0.141 4.141 17 N -0.412 5.412 18 Si 0.737 3.263 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.306 4.306 23 C -0.033 4.033 24 N -0.276 5.276 25 S 0.476 5.524 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.240 0.760 32 H 0.146 0.854 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.488 13.336 2.206 13.744 hybrid contribution -0.541 -0.471 -0.093 0.723 sum -3.029 12.864 2.113 13.384 Atomic orbital electron populations 1.22301 0.92904 1.05749 1.05092 1.21486 0.91398 0.85828 0.71059 1.90587 1.72195 1.33200 1.36822 1.25362 0.98404 0.98861 1.17615 1.20730 0.93634 0.98051 0.96980 1.20571 1.01359 0.90389 0.99706 1.25416 0.97408 0.98366 1.11540 1.17171 0.85888 0.83176 0.78770 1.90912 1.21050 1.76361 1.44443 1.43232 1.08967 1.05288 1.72002 1.18074 0.91160 0.81766 0.97921 1.21534 0.97185 0.93746 1.14101 1.17551 0.91761 0.91548 0.85579 1.19565 0.94345 0.97242 1.37311 0.89865 1.25973 1.00776 0.95257 0.92112 1.69764 1.27322 1.20284 1.23782 0.86289 0.79525 0.80567 0.79961 1.18650 1.20185 1.18815 1.21916 0.93774 0.99042 1.15849 1.21763 0.97815 0.87762 0.95987 1.67186 1.19896 1.16223 1.24259 1.84023 1.06102 0.95214 1.67107 0.88489 0.89011 0.88455 0.82675 0.82257 0.75998 0.85376 0.90542 0.87808 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.34 9.73 36.01 0.35 -0.99 16 2 C 0.43 4.33 7.22 -31.08 -0.22 4.11 16 3 O -0.45 -5.93 17.55 5.50 0.10 -5.83 16 4 C -0.28 -3.05 6.41 -36.79 -0.24 -3.29 16 5 C -0.06 -0.67 9.89 -40.60 -0.40 -1.07 16 6 C -0.09 -1.12 9.88 -40.71 -0.40 -1.52 16 7 C -0.20 -2.93 6.46 -36.47 -0.24 -3.16 16 8 C 0.57 10.70 7.76 -12.60 -0.10 10.60 16 9 O -0.46 -10.32 15.07 5.27 0.08 -10.24 16 10 N -0.65 -12.57 5.38 -12.53 -0.07 -12.64 16 11 C 0.33 7.92 7.41 -154.79 -1.15 6.77 16 12 C -0.24 -5.89 8.62 -38.47 -0.33 -6.22 16 13 C 0.14 3.66 5.60 -106.55 -0.60 3.07 16 14 C -0.45 -11.25 9.12 -37.65 -0.34 -11.59 16 15 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 16 C 0.08 1.82 5.20 -17.34 -0.09 1.73 16 17 N -0.79 -18.60 10.92 55.55 0.61 -17.99 16 18 Si 0.91 17.20 29.59 -169.99 -5.03 12.17 16 19 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 20 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 22 C -0.28 -6.71 9.90 -38.70 -0.38 -7.10 16 23 C 0.12 2.82 11.15 -17.69 -0.20 2.62 16 24 N -0.56 -13.87 7.84 -12.54 -0.10 -13.97 16 25 S 0.21 2.21 21.79 -107.50 -2.34 -0.14 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.55 8.12 -51.93 -0.42 0.12 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.16 1.50 8.04 -52.48 -0.42 1.07 16 30 H 0.16 1.93 8.04 -52.49 -0.42 1.51 16 31 H 0.40 6.50 7.81 -40.82 -0.32 6.18 16 32 H 0.13 3.09 6.20 -52.48 -0.33 2.77 16 33 H 0.28 6.05 8.29 -40.82 -0.34 5.72 16 34 H 0.10 2.26 8.06 -52.48 -0.42 1.83 16 35 H 0.13 2.54 8.06 -52.48 -0.42 2.11 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -31.11 330.62 -9.26 -40.37 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.15 Total: 9.32 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -4.34 Total: -6.04 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.44 Total: -44.60 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.18 Total: -16.07 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.34 Total: -0.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.11 -9.26 -40.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532435633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.350 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds