Wall clock time and date at job start Tue Mar 31 2020 12:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53009 * 109.46859 * 205.14932 * 3 2 1 5 5 N 1.46492 * 109.47217 * 180.02562 * 4 3 2 6 6 C 1.46497 * 120.00028 * 85.04923 * 5 4 3 7 7 C 1.50703 * 109.47241 * 96.57204 * 6 5 4 8 8 H 1.07996 * 119.99625 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00287 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99832 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00242 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47042 * 89.99452 * 11 9 7 13 13 H 1.48501 * 109.47311 * 209.99702 * 11 9 7 14 14 H 1.48504 * 109.46978 * 329.99888 * 11 9 7 15 15 C 1.34779 * 120.00227 * 265.05061 * 5 4 3 16 16 O 1.21504 * 119.99859 * 5.76408 * 15 5 4 17 17 C 1.48205 * 120.00184 * 185.76408 * 15 5 4 18 18 N 1.32979 * 120.61338 * 355.34876 * 17 15 5 19 19 C 1.31778 * 120.90827 * 179.76450 * 18 17 15 20 20 N 1.31187 * 122.64276 * 0.53379 * 19 18 17 21 21 C 1.34520 * 121.11045 * 359.73371 * 20 19 18 22 22 C 1.44788 * 130.27473 * 180.02562 * 21 20 19 23 23 C 1.32200 * 114.91625 * 180.02562 * 22 21 20 24 24 S 1.75370 * 111.45011 * 0.02562 * 23 22 21 25 25 C 1.40446 * 120.61742 * 175.63023 * 17 15 5 26 26 H 1.08999 * 109.47252 * 85.15784 * 3 2 1 27 27 H 1.09000 * 109.47742 * 325.15169 * 3 2 1 28 28 H 1.08999 * 109.46493 * 60.00388 * 4 3 2 29 29 H 1.09000 * 109.47137 * 300.00608 * 4 3 2 30 30 H 1.09002 * 109.47300 * 216.57076 * 6 5 4 31 31 H 1.09004 * 109.47310 * 336.57498 * 6 5 4 32 32 H 0.97003 * 120.00057 * 180.02562 * 10 9 7 33 33 H 1.07996 * 118.67448 * 180.24655 * 19 18 17 34 34 H 1.08001 * 122.54661 * 0.02782 * 22 21 20 35 35 H 1.07998 * 124.28007 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3067 0.6131 5 7 4.5823 1.3077 0.6126 6 6 5.3141 1.7465 -0.5783 7 6 5.7052 3.1935 -0.4229 8 1 5.4352 3.7325 0.4732 9 6 6.4067 3.8296 -1.4251 10 7 6.7350 3.1733 -2.5165 11 14 6.8908 5.6235 -1.2327 12 1 8.2243 5.7096 -0.5850 13 1 6.9475 6.2671 -2.5698 14 1 5.8855 6.3199 -0.3903 15 6 5.2569 0.9050 1.7077 16 8 4.6547 0.4428 2.6564 17 6 6.7333 1.0259 1.7547 18 7 7.4128 1.4433 0.6906 19 6 8.7251 1.5573 0.7274 20 7 9.4314 1.2619 1.7927 21 6 8.8403 0.8258 2.9197 22 6 9.4166 0.4484 4.1932 23 6 8.5434 0.0582 5.1059 24 16 6.9028 0.1136 4.4888 25 6 7.4411 0.6960 2.9220 26 1 2.9714 -0.0859 -1.0240 27 1 2.9718 -0.8425 0.5872 28 1 2.7540 1.3933 1.6371 29 1 2.7536 2.1499 0.0259 30 1 6.2109 1.1386 -0.6982 31 1 4.6789 1.6342 -1.4570 32 1 7.2288 3.6207 -3.2214 33 1 9.2402 1.9036 -0.1563 34 1 10.4792 0.4830 4.3832 35 1 8.8070 -0.2551 6.1052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596895033.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:56 Heat of formation + Delta-G solvation = 86.899241 kcal Electronic energy + Delta-G solvation = -23503.483530 eV Core-core repulsion = 20015.597044 eV Total energy + Delta-G solvation = -3487.886486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85976 -39.14616 -36.74060 -36.01695 -35.34252 -33.25456 -32.65338 -31.01617 -30.34113 -27.25512 -25.66468 -24.70380 -23.51714 -22.92655 -21.49258 -19.39976 -18.07130 -17.61854 -17.13496 -16.61183 -16.37964 -15.72892 -15.23071 -15.05544 -14.67341 -14.46017 -14.37133 -14.15058 -13.98075 -13.38951 -13.02912 -12.67003 -12.47470 -12.36084 -12.20906 -12.05095 -11.79219 -11.60262 -11.07451 -11.02431 -10.89260 -10.73188 -10.50142 -10.27404 -10.19500 -9.87319 -9.69619 -9.15739 -8.69283 -8.34638 -8.04119 -7.79717 -6.15638 -4.14416 0.52897 0.85835 1.52362 2.06201 2.17202 2.79829 2.90820 3.18170 3.21213 3.29349 3.33449 3.41186 4.02570 4.14673 4.24116 4.32551 4.48037 4.67978 4.94296 5.15656 5.18325 5.21615 5.25001 5.48039 5.60751 5.62476 5.85387 5.94141 6.04381 6.15054 6.51175 6.54952 7.07949 7.33735 7.50219 7.66507 7.74209 7.99359 8.10510 8.34322 8.56709 8.84562 9.44860 10.91991 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.008874 B = 0.006763 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.519823 B = 4139.002984 C = 6731.482963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.122 3.878 5 N -0.567 5.567 6 C 0.225 3.775 7 C -0.502 4.502 8 H 0.052 0.948 9 C 0.072 3.928 10 N -0.884 5.884 11 Si 0.882 3.118 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.564 3.436 16 O -0.551 6.551 17 C 0.181 3.819 18 N -0.398 5.398 19 C 0.293 3.707 20 N -0.487 5.487 21 C 0.149 3.851 22 C -0.117 4.117 23 C -0.194 4.194 24 S 0.186 5.814 25 C -0.223 4.223 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.203 0.797 34 H 0.152 0.848 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.936 -6.622 9.173 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.086 4.086 4 C -0.003 4.003 5 N -0.296 5.296 6 C 0.106 3.894 7 C -0.542 4.542 8 H 0.070 0.930 9 C -0.131 4.131 10 N -0.523 5.523 11 Si 0.710 3.290 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.350 3.650 16 O -0.430 6.430 17 C 0.021 3.979 18 N -0.114 5.114 19 C 0.002 3.998 20 N -0.202 5.202 21 C 0.004 3.996 22 C -0.148 4.148 23 C -0.332 4.332 24 S 0.448 5.552 25 C -0.344 4.344 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.219 0.781 34 H 0.169 0.831 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.167 -6.859 9.275 11.594 hybrid contribution 1.964 1.407 -0.078 2.417 sum 3.131 -5.452 9.197 11.140 Atomic orbital electron populations 1.81188 1.13046 1.08868 1.09491 1.29068 0.95075 0.92936 0.92629 1.19752 0.81389 1.02008 1.05464 1.21265 0.80881 0.95563 1.02565 1.48216 1.05431 1.60350 1.15566 1.20196 0.92913 0.96492 0.79778 1.21228 1.34924 0.94999 1.03027 0.92998 1.24733 0.95719 0.97469 0.95159 1.69903 1.39044 1.36375 1.06936 0.86748 0.79073 0.85659 0.77487 1.20677 1.21090 1.20099 1.17721 0.85177 0.78974 0.83146 1.90705 1.68321 1.47128 1.36839 1.21057 0.95069 0.93922 0.87839 1.69622 1.08800 1.07715 1.25271 1.25095 0.87283 0.92247 0.95146 1.68222 1.41407 1.11421 0.99138 1.20310 0.88154 0.97270 0.93908 1.20453 1.01260 1.03279 0.89813 1.25733 0.98810 1.04843 1.03804 1.84729 1.02734 1.66534 1.01205 1.24266 0.99279 1.09393 1.01460 0.86714 0.87202 0.89603 0.88978 0.89952 0.94875 0.92742 0.78059 0.83053 0.80843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.20 18.54 42.16 0.78 -6.42 16 2 C 0.22 3.01 15.43 -20.76 -0.32 2.69 16 3 C -0.04 -0.54 6.03 -29.52 -0.18 -0.72 16 4 C 0.12 1.82 5.35 -4.04 -0.02 1.80 16 5 N -0.57 -10.28 2.48 -176.04 -0.44 -10.72 16 6 C 0.22 4.70 4.78 -5.19 -0.02 4.67 16 7 C -0.50 -11.89 7.67 -34.44 -0.26 -12.15 16 8 H 0.05 1.30 7.81 -52.49 -0.41 0.89 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.88 -22.22 13.29 55.43 0.74 -21.49 16 11 Si 0.88 19.71 29.54 -169.99 -5.02 14.68 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.56 10.65 7.60 -12.16 -0.09 10.56 16 16 O -0.55 -10.46 14.78 5.36 0.08 -10.38 16 17 C 0.18 3.45 6.62 -82.44 -0.55 2.91 16 18 N -0.40 -7.86 5.05 -11.12 -0.06 -7.91 16 19 C 0.29 5.30 12.22 -92.69 -1.13 4.16 16 20 N -0.49 -8.48 10.49 -11.76 -0.12 -8.60 16 21 C 0.15 2.44 7.23 -83.24 -0.60 1.84 16 22 C -0.12 -1.46 10.38 -38.92 -0.40 -1.87 16 23 C -0.19 -2.10 11.03 28.81 0.32 -1.78 16 24 S 0.19 2.60 21.60 -107.50 -2.32 0.27 16 25 C -0.22 -3.84 6.35 -37.89 -0.24 -4.08 16 26 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.09 1.28 7.36 -51.93 -0.38 0.90 16 29 H 0.09 1.36 8.11 -51.93 -0.42 0.94 16 30 H 0.08 1.82 5.53 -51.93 -0.29 1.53 16 31 H 0.03 0.71 8.02 -51.93 -0.42 0.29 16 32 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 33 H 0.20 3.31 8.06 -52.49 -0.42 2.89 16 34 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -28.40 328.85 -8.18 -36.58 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -3.17 Total: -0.67 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -3.61 Total: 9.70 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.90 Total: -55.14 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.32 Total: 0.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.40 -8.18 -36.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596895033.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.481 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds