Wall clock time and date at job start Tue Mar 31 2020 12:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53009 * 109.46859 * 205.14932 * 3 2 1 5 5 N 1.46492 * 109.47217 * 180.02562 * 4 3 2 6 6 C 1.46497 * 120.00028 * 85.04923 * 5 4 3 7 7 C 1.50703 * 109.47241 * 96.57204 * 6 5 4 8 8 H 1.07996 * 119.99625 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00287 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99832 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00242 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47042 * 89.99452 * 11 9 7 13 13 H 1.48501 * 109.47311 * 209.99702 * 11 9 7 14 14 H 1.48504 * 109.46978 * 329.99888 * 11 9 7 15 15 C 1.34779 * 120.00227 * 265.05061 * 5 4 3 16 16 O 1.21504 * 119.99859 * 5.76408 * 15 5 4 17 17 C 1.48205 * 120.00184 * 185.76408 * 15 5 4 18 18 N 1.32979 * 120.61338 * 355.34876 * 17 15 5 19 19 C 1.31778 * 120.90827 * 179.76450 * 18 17 15 20 20 N 1.31187 * 122.64276 * 0.53379 * 19 18 17 21 21 C 1.34520 * 121.11045 * 359.73371 * 20 19 18 22 22 C 1.44788 * 130.27473 * 180.02562 * 21 20 19 23 23 C 1.32200 * 114.91625 * 180.02562 * 22 21 20 24 24 S 1.75370 * 111.45011 * 0.02562 * 23 22 21 25 25 C 1.40446 * 120.61742 * 175.63023 * 17 15 5 26 26 H 1.08999 * 109.47252 * 85.15784 * 3 2 1 27 27 H 1.09000 * 109.47742 * 325.15169 * 3 2 1 28 28 H 1.08999 * 109.46493 * 60.00388 * 4 3 2 29 29 H 1.09000 * 109.47137 * 300.00608 * 4 3 2 30 30 H 1.09002 * 109.47300 * 216.57076 * 6 5 4 31 31 H 1.09004 * 109.47310 * 336.57498 * 6 5 4 32 32 H 0.97003 * 120.00057 * 180.02562 * 10 9 7 33 33 H 1.07996 * 118.67448 * 180.24655 * 19 18 17 34 34 H 1.08001 * 122.54661 * 0.02782 * 22 21 20 35 35 H 1.07998 * 124.28007 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3067 0.6131 5 7 4.5823 1.3077 0.6126 6 6 5.3141 1.7465 -0.5783 7 6 5.7052 3.1935 -0.4229 8 1 5.4352 3.7325 0.4732 9 6 6.4067 3.8296 -1.4251 10 7 6.7350 3.1733 -2.5165 11 14 6.8908 5.6235 -1.2327 12 1 8.2243 5.7096 -0.5850 13 1 6.9475 6.2671 -2.5698 14 1 5.8855 6.3199 -0.3903 15 6 5.2569 0.9050 1.7077 16 8 4.6547 0.4428 2.6564 17 6 6.7333 1.0259 1.7547 18 7 7.4128 1.4433 0.6906 19 6 8.7251 1.5573 0.7274 20 7 9.4314 1.2619 1.7927 21 6 8.8403 0.8258 2.9197 22 6 9.4166 0.4484 4.1932 23 6 8.5434 0.0582 5.1059 24 16 6.9028 0.1136 4.4888 25 6 7.4411 0.6960 2.9220 26 1 2.9714 -0.0859 -1.0240 27 1 2.9718 -0.8425 0.5872 28 1 2.7540 1.3933 1.6371 29 1 2.7536 2.1499 0.0259 30 1 6.2109 1.1386 -0.6982 31 1 4.6789 1.6342 -1.4570 32 1 7.2288 3.6207 -3.2214 33 1 9.2402 1.9036 -0.1563 34 1 10.4792 0.4830 4.3832 35 1 8.8070 -0.2551 6.1052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596895033.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:55 Heat of formation + Delta-G solvation = 72.634065 kcal Electronic energy + Delta-G solvation = -23504.102114 eV Core-core repulsion = 20015.597044 eV Total energy + Delta-G solvation = -3488.505070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.19073 -40.54357 -37.96020 -37.23770 -36.70873 -34.70223 -34.27821 -32.32633 -31.55385 -28.95904 -26.95315 -25.94572 -25.03765 -24.39379 -22.62506 -20.72470 -19.34335 -18.93380 -18.45422 -18.18087 -17.74441 -17.10318 -16.61050 -16.46678 -16.16306 -15.73817 -15.62822 -15.50025 -15.01985 -14.68546 -14.39907 -14.18268 -13.76329 -13.60937 -13.57383 -13.30491 -13.21264 -12.95961 -12.70507 -12.66683 -12.16103 -12.09088 -11.85779 -11.80188 -11.61831 -11.53770 -11.16129 -10.50105 -10.27203 -9.86267 -9.53480 -8.96574 -8.02066 -6.04545 -0.72691 -0.43138 0.38997 1.00055 1.06754 1.41069 1.46985 1.50947 1.62714 1.79409 1.80086 2.08624 2.49348 2.81825 2.85636 3.00679 3.18473 3.33172 3.38598 3.68543 4.00554 4.11155 4.16978 4.24412 4.53895 4.64088 4.83550 4.87916 4.97510 5.03064 5.06227 5.23655 5.57131 5.77322 5.90251 5.93856 6.30224 6.42023 6.55515 6.91295 7.02991 7.15652 7.57517 9.04803 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.008874 B = 0.006763 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.519823 B = 4139.002984 C = 6731.482963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.030 4.030 4 C 0.119 3.881 5 N -0.568 5.568 6 C 0.240 3.760 7 C -0.501 4.501 8 H 0.033 0.967 9 C 0.042 3.958 10 N -0.906 5.906 11 Si 0.922 3.078 12 H -0.283 1.283 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.561 3.439 16 O -0.554 6.554 17 C 0.161 3.839 18 N -0.426 5.426 19 C 0.281 3.719 20 N -0.492 5.492 21 C 0.142 3.858 22 C -0.131 4.131 23 C -0.155 4.155 24 S 0.185 5.815 25 C -0.245 4.245 26 H 0.131 0.869 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.208 0.792 34 H 0.181 0.819 35 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -7.473 11.210 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.071 4.071 4 C -0.005 4.005 5 N -0.296 5.296 6 C 0.120 3.880 7 C -0.541 4.541 8 H 0.051 0.949 9 C -0.158 4.158 10 N -0.546 5.546 11 Si 0.751 3.249 12 H -0.209 1.209 13 H -0.209 1.209 14 H -0.207 1.207 15 C 0.347 3.653 16 O -0.434 6.434 17 C 0.002 3.998 18 N -0.141 5.141 19 C -0.009 4.009 20 N -0.206 5.206 21 C -0.005 4.005 22 C -0.161 4.161 23 C -0.293 4.293 24 S 0.446 5.554 25 C -0.366 4.366 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.225 0.775 34 H 0.198 0.802 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.035 -7.707 11.318 13.843 hybrid contribution 1.741 1.605 -0.501 2.420 sum 3.776 -6.102 10.817 12.981 Atomic orbital electron populations 1.81217 1.14259 1.10173 1.10979 1.29150 0.94991 0.91673 0.91300 1.19675 0.80185 1.00845 1.06382 1.21375 0.79103 0.97094 1.02907 1.48116 1.06551 1.60217 1.14726 1.19827 0.92755 0.94894 0.80477 1.21279 1.34522 0.96297 1.01975 0.94854 1.25104 0.96047 0.99432 0.95233 1.69953 1.40113 1.37096 1.07404 0.86129 0.78371 0.83318 0.77122 1.20905 1.20930 1.20741 1.17819 0.85396 0.78903 0.83146 1.90686 1.68525 1.47400 1.36793 1.21187 0.95229 0.94669 0.88709 1.69505 1.09555 1.08889 1.26191 1.25204 0.87068 0.92825 0.95847 1.68252 1.41318 1.11599 0.99465 1.21051 0.88268 0.96360 0.94829 1.20731 1.03014 1.04118 0.88208 1.26226 0.96081 1.01836 1.05151 1.84729 1.05340 1.65912 0.99370 1.24544 0.99914 1.09737 1.02448 0.85162 0.85823 0.89587 0.89057 0.90846 0.95279 0.92859 0.77530 0.80158 0.75956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.35 18.54 20.01 0.37 -14.98 16 2 C 0.25 6.43 15.43 89.44 1.38 7.81 16 3 C -0.03 -0.68 6.03 28.79 0.17 -0.51 16 4 C 0.12 3.47 5.35 86.38 0.46 3.93 16 5 N -0.57 -20.57 2.48 -829.16 -2.05 -22.62 16 6 C 0.24 10.15 4.78 85.63 0.41 10.56 16 7 C -0.50 -24.09 7.67 25.60 0.20 -23.89 16 8 H 0.03 1.70 7.81 -2.91 -0.02 1.67 16 9 C 0.04 2.08 5.46 84.65 0.46 2.54 16 10 N -0.91 -46.01 13.29 21.45 0.28 -45.73 16 11 Si 0.92 40.78 29.54 68.60 2.03 42.80 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 13 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 15 C 0.56 21.16 7.60 86.89 0.66 21.82 16 16 O -0.55 -20.68 14.78 -3.73 -0.06 -20.74 16 17 C 0.16 6.19 6.62 42.16 0.28 6.47 16 18 N -0.43 -17.13 5.05 -189.09 -0.96 -18.08 16 19 C 0.28 10.37 12.22 181.07 2.21 12.59 16 20 N -0.49 -16.92 10.49 -191.11 -2.00 -18.92 16 21 C 0.14 4.44 7.23 40.96 0.30 4.74 16 22 C -0.13 -2.81 10.38 22.92 0.24 -2.58 16 23 C -0.16 -2.67 11.03 66.80 0.74 -1.93 16 24 S 0.18 4.71 21.60 -56.49 -1.22 3.49 16 25 C -0.25 -8.24 6.35 23.36 0.15 -8.09 16 26 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.09 2.51 7.36 -2.39 -0.02 2.49 16 29 H 0.09 2.67 8.11 -2.39 -0.02 2.65 16 30 H 0.07 3.31 5.53 -2.39 -0.01 3.30 16 31 H 0.03 1.25 8.02 -2.38 -0.02 1.23 16 32 H 0.26 12.90 8.31 -92.71 -0.77 12.13 16 33 H 0.21 7.05 8.06 -2.91 -0.02 7.03 16 34 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.22 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -61.77 328.85 5.20 -56.57 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.15 Total: 4.73 kcal Atomic # 6 Polarization: 25.82 SS G_CDS: 7.66 Total: 33.47 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -4.36 Total: -120.33 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.06 Total: -20.74 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.22 Total: 3.49 kcal Total: -61.77 5.20 -56.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596895033.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.200 kcal (2) G-P(sol) polarization free energy of solvation -61.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds