Wall clock time and date at job start Tue Mar 31 2020 10:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37810 * 121.55754 * 2 1 4 4 C 1.35136 * 114.75783 * 180.20739 * 3 2 1 5 5 S 1.76208 * 127.24685 * 179.86699 * 4 3 2 6 6 O 1.42097 * 106.40235 * 336.16871 * 5 4 3 7 7 O 1.42094 * 106.40087 * 203.24872 * 5 4 3 8 8 N 1.65606 * 107.21619 * 89.70973 * 5 4 3 9 9 C 1.46504 * 119.99575 * 269.99858 * 8 5 4 10 10 C 1.50697 * 109.47069 * 264.99677 * 9 8 5 11 11 H 1.08002 * 120.00340 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00016 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99982 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00126 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47164 * 89.99889 * 14 12 10 16 16 H 1.48498 * 109.47088 * 209.99624 * 14 12 10 17 17 H 1.48495 * 109.47007 * 330.00065 * 14 12 10 18 18 C 1.46494 * 119.99834 * 90.00148 * 8 5 4 19 19 C 1.53006 * 109.47201 * 264.99699 * 18 8 5 20 20 C 1.53000 * 117.49988 * 243.75382 * 19 18 8 21 21 C 1.52993 * 117.50097 * 175.08830 * 19 18 8 22 22 S 1.72047 * 105.50531 * 359.60826 * 4 3 2 23 23 N 1.30081 * 121.56016 * 179.75283 * 2 1 3 24 24 H 1.09000 * 109.47340 * 270.21910 * 1 2 3 25 25 H 1.09007 * 109.47330 * 30.22384 * 1 2 3 26 26 H 1.09002 * 109.46677 * 150.22371 * 1 2 3 27 27 H 1.08003 * 122.62039 * 0.03869 * 3 2 1 28 28 H 1.08997 * 109.47445 * 25.00275 * 9 8 5 29 29 H 1.09009 * 109.46622 * 145.00253 * 9 8 5 30 30 H 0.97003 * 120.00030 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.47261 * 145.00058 * 18 8 5 32 32 H 1.08995 * 109.47645 * 24.99975 * 18 8 5 33 33 H 1.08998 * 115.54561 * 29.41722 * 19 18 8 34 34 H 1.09002 * 117.50034 * 359.97438 * 20 19 18 35 35 H 1.08994 * 117.49821 * 145.02184 * 20 19 18 36 36 H 1.08998 * 117.50372 * 214.98185 * 21 19 18 37 37 H 1.09001 * 117.49911 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5701 1.0143 -0.0044 5 16 4.7952 2.2809 -0.0091 6 8 4.1760 3.4359 -0.5582 7 8 5.9725 1.6983 -0.5509 8 7 5.1355 2.6394 1.5715 9 6 4.3740 3.6801 2.2668 10 6 5.1196 4.9872 2.1853 11 1 6.0658 5.0378 1.6671 12 6 4.5938 6.1185 2.7724 13 7 3.4414 6.0570 3.4030 14 14 5.5177 7.7389 2.6708 15 1 5.0932 8.4752 1.4530 16 1 5.2169 8.5564 3.8734 17 1 6.9772 7.4733 2.6050 18 6 6.1979 1.9159 2.2742 19 6 5.5906 0.7464 3.0517 20 6 5.7066 0.7758 4.5770 21 6 6.5543 -0.2053 3.7632 22 16 3.8305 -0.6863 0.0029 23 7 2.1879 -1.1084 0.0048 24 1 -0.3634 0.0039 1.0276 25 1 -0.3634 0.8880 -0.5173 26 1 -0.3633 -0.8920 -0.5104 27 1 1.7578 2.1465 0.0006 28 1 3.3963 3.7896 1.7977 29 1 4.2461 3.3994 3.3123 30 1 3.0717 6.8529 3.8163 31 1 6.7002 2.5910 2.9672 32 1 6.9189 1.5358 1.5505 33 1 4.6842 0.3179 2.6240 34 1 6.2160 1.6281 5.0267 35 1 4.8768 0.3662 5.1528 36 1 6.2818 -1.2599 3.8041 37 1 7.6210 0.0020 3.6779 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601336636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:10 Heat of formation + Delta-G solvation = -8.908470 kcal Electronic energy + Delta-G solvation = -22695.234679 eV Core-core repulsion = 19306.344860 eV Total energy + Delta-G solvation = -3388.889819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.19038 -37.69172 -36.74406 -35.38912 -34.88838 -32.43804 -31.72652 -29.78964 -27.96034 -25.48071 -24.03961 -22.51612 -22.11926 -20.54905 -19.94310 -19.03085 -18.01689 -17.01272 -16.63911 -16.33136 -15.80623 -14.92463 -14.82591 -14.50199 -14.39864 -14.14503 -13.37168 -13.12210 -12.82037 -12.78281 -12.57098 -12.50487 -11.97876 -11.74262 -11.60058 -11.57772 -11.37472 -11.22379 -11.16160 -11.10987 -10.86497 -10.63286 -10.61786 -10.32082 -10.15539 -10.01707 -9.79568 -9.61667 -8.68322 -8.48800 -8.22540 -6.11190 -4.15361 0.16704 0.78223 1.29970 1.70109 2.18279 3.30327 3.36538 3.38765 3.46620 4.03497 4.12126 4.40914 4.53658 4.86387 4.94399 4.99673 5.11243 5.13842 5.18506 5.24864 5.36856 5.52050 5.55270 5.56901 5.73630 5.80511 5.89479 6.05926 6.11576 6.30500 6.40964 6.44062 6.51583 7.15133 7.28673 7.49151 7.85761 8.13198 8.86780 9.50051 10.97424 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.005547 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.714119 B = 5046.505483 C = 5805.460705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.096 3.904 3 C -0.062 4.062 4 C -0.770 4.770 5 S 2.705 3.295 6 O -0.926 6.926 7 O -0.962 6.962 8 N -0.969 5.969 9 C 0.256 3.744 10 C -0.529 4.529 11 H 0.062 0.938 12 C 0.064 3.936 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.148 3.852 19 C -0.175 4.175 20 C -0.171 4.171 21 C -0.180 4.180 22 S 0.361 5.639 23 N -0.448 5.448 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.173 0.827 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.264 0.736 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 -13.097 -2.141 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.101 4.101 4 C -0.978 4.978 5 S 2.786 3.214 6 O -0.916 6.916 7 O -0.952 6.952 8 N -0.808 5.808 9 C 0.134 3.866 10 C -0.569 4.569 11 H 0.080 0.920 12 C -0.138 4.138 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.197 1.197 18 C 0.022 3.978 19 C -0.195 4.195 20 C -0.208 4.208 21 C -0.217 4.217 22 S 0.517 5.483 23 N -0.273 5.273 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.190 0.810 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.536 -14.710 -2.770 14.978 hybrid contribution -1.082 2.083 0.400 2.381 sum -1.618 -12.627 -2.370 12.949 Atomic orbital electron populations 1.20606 0.85929 1.04158 1.03975 1.21755 0.99502 0.88020 0.98891 1.21157 0.90586 1.01622 0.96705 1.37720 1.17938 1.22391 1.19789 1.02036 0.72855 0.72708 0.73775 1.93623 1.77468 1.44247 1.76293 1.93535 1.44648 1.79636 1.77431 1.57417 1.45473 1.47150 1.30802 1.19171 0.90657 0.83519 0.93232 1.21451 1.06896 0.93369 1.35177 0.91973 1.24907 0.94997 0.99008 0.94919 1.69916 1.17993 1.29672 1.35746 0.86519 0.80171 0.83282 0.77626 1.20376 1.21176 1.19749 1.20916 0.88803 0.91537 0.96560 1.22931 1.01189 0.99961 0.95427 1.22996 1.02398 1.01807 0.93574 1.22942 0.97554 0.96108 1.05124 1.83773 1.08481 0.92469 1.63536 1.76394 1.02185 1.27406 1.21331 0.89570 0.89570 0.90233 0.80958 0.94346 0.94024 0.92644 0.88696 0.89540 0.88453 0.88234 0.89302 0.89120 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.26 36.01 0.37 -0.42 16 2 C 0.10 1.28 6.72 -83.49 -0.56 0.72 16 3 C -0.06 -0.92 9.79 -40.84 -0.40 -1.32 16 4 C -0.77 -12.69 6.64 29.63 0.20 -12.50 16 5 S 2.71 52.73 5.81 -107.50 -0.62 52.11 16 6 O -0.93 -21.08 16.86 -57.18 -0.96 -22.05 16 7 O -0.96 -19.16 16.53 -57.18 -0.94 -20.10 16 8 N -0.97 -19.19 2.77 -115.66 -0.32 -19.51 16 9 C 0.26 6.05 5.10 -5.19 -0.03 6.02 16 10 C -0.53 -14.14 9.38 -34.44 -0.32 -14.46 16 11 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 14 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 C 0.15 2.49 5.96 -4.04 -0.02 2.46 16 19 C -0.17 -2.55 6.01 -90.62 -0.54 -3.10 16 20 C -0.17 -2.28 10.18 -26.69 -0.27 -2.55 16 21 C -0.18 -2.14 10.25 -26.69 -0.27 -2.41 16 22 S 0.36 5.30 23.37 -107.50 -2.51 2.78 16 23 N -0.45 -6.51 12.05 32.03 0.39 -6.12 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.17 2.38 8.06 -52.48 -0.42 1.95 16 28 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 29 H 0.04 1.01 8.11 -51.92 -0.42 0.58 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.09 1.61 7.84 -51.93 -0.41 1.20 16 32 H 0.09 1.36 6.91 -51.93 -0.36 1.00 16 33 H 0.10 1.44 7.84 -51.93 -0.41 1.03 16 34 H 0.10 1.35 8.03 -51.93 -0.42 0.93 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -31.39 346.65 -10.91 -42.29 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.91 Total: -0.47 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -1.95 Total: -25.90 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.80 Total: -49.99 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.91 Total: -42.15 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 58.03 SS G_CDS: -3.14 Total: 54.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.39 -10.91 -42.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.385 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds