Wall clock time and date at job start Tue Mar 31 2020 10:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37810 * 121.55754 * 2 1 4 4 C 1.35136 * 114.75783 * 180.20739 * 3 2 1 5 5 S 1.76208 * 127.24685 * 179.86699 * 4 3 2 6 6 O 1.42097 * 106.40235 * 336.16871 * 5 4 3 7 7 O 1.42094 * 106.40087 * 203.24872 * 5 4 3 8 8 N 1.65606 * 107.21619 * 89.70973 * 5 4 3 9 9 C 1.46504 * 119.99575 * 269.99858 * 8 5 4 10 10 C 1.50697 * 109.47069 * 264.99677 * 9 8 5 11 11 H 1.08002 * 120.00340 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00016 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99982 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00126 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47164 * 89.99889 * 14 12 10 16 16 H 1.48498 * 109.47088 * 209.99624 * 14 12 10 17 17 H 1.48495 * 109.47007 * 330.00065 * 14 12 10 18 18 C 1.46494 * 119.99834 * 90.00148 * 8 5 4 19 19 C 1.53006 * 109.47201 * 264.99699 * 18 8 5 20 20 C 1.53000 * 117.49988 * 243.75382 * 19 18 8 21 21 C 1.52993 * 117.50097 * 175.08830 * 19 18 8 22 22 S 1.72047 * 105.50531 * 359.60826 * 4 3 2 23 23 N 1.30081 * 121.56016 * 179.75283 * 2 1 3 24 24 H 1.09000 * 109.47340 * 270.21910 * 1 2 3 25 25 H 1.09007 * 109.47330 * 30.22384 * 1 2 3 26 26 H 1.09002 * 109.46677 * 150.22371 * 1 2 3 27 27 H 1.08003 * 122.62039 * 0.03869 * 3 2 1 28 28 H 1.08997 * 109.47445 * 25.00275 * 9 8 5 29 29 H 1.09009 * 109.46622 * 145.00253 * 9 8 5 30 30 H 0.97003 * 120.00030 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.47261 * 145.00058 * 18 8 5 32 32 H 1.08995 * 109.47645 * 24.99975 * 18 8 5 33 33 H 1.08998 * 115.54561 * 29.41722 * 19 18 8 34 34 H 1.09002 * 117.50034 * 359.97438 * 20 19 18 35 35 H 1.08994 * 117.49821 * 145.02184 * 20 19 18 36 36 H 1.08998 * 117.50372 * 214.98185 * 21 19 18 37 37 H 1.09001 * 117.49911 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5701 1.0143 -0.0044 5 16 4.7952 2.2809 -0.0091 6 8 4.1760 3.4359 -0.5582 7 8 5.9725 1.6983 -0.5509 8 7 5.1355 2.6394 1.5715 9 6 4.3740 3.6801 2.2668 10 6 5.1196 4.9872 2.1853 11 1 6.0658 5.0378 1.6671 12 6 4.5938 6.1185 2.7724 13 7 3.4414 6.0570 3.4030 14 14 5.5177 7.7389 2.6708 15 1 5.0932 8.4752 1.4530 16 1 5.2169 8.5564 3.8734 17 1 6.9772 7.4733 2.6050 18 6 6.1979 1.9159 2.2742 19 6 5.5906 0.7464 3.0517 20 6 5.7066 0.7758 4.5770 21 6 6.5543 -0.2053 3.7632 22 16 3.8305 -0.6863 0.0029 23 7 2.1879 -1.1084 0.0048 24 1 -0.3634 0.0039 1.0276 25 1 -0.3634 0.8880 -0.5173 26 1 -0.3633 -0.8920 -0.5104 27 1 1.7578 2.1465 0.0006 28 1 3.3963 3.7896 1.7977 29 1 4.2461 3.3994 3.3123 30 1 3.0717 6.8529 3.8163 31 1 6.7002 2.5910 2.9672 32 1 6.9189 1.5358 1.5505 33 1 4.6842 0.3179 2.6240 34 1 6.2160 1.6281 5.0267 35 1 4.8768 0.3662 5.1528 36 1 6.2818 -1.2599 3.8041 37 1 7.6210 0.0020 3.6779 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601336636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:10 Heat of formation + Delta-G solvation = -29.009900 kcal Electronic energy + Delta-G solvation = -22696.106343 eV Core-core repulsion = 19306.344860 eV Total energy + Delta-G solvation = -3389.761483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.31649 -38.93873 -38.36719 -37.03688 -36.43542 -34.39576 -32.90424 -30.67044 -29.72095 -27.10998 -25.24250 -24.33933 -23.15024 -21.74334 -21.07429 -20.34192 -19.52645 -18.56311 -18.41803 -17.85845 -17.33941 -16.35566 -16.20373 -15.92191 -15.63620 -15.33315 -14.88066 -14.40601 -14.22945 -14.18339 -13.68309 -13.61262 -13.46683 -13.32236 -13.21143 -13.01921 -12.77489 -12.71730 -12.62465 -12.53311 -12.40003 -12.27962 -12.02435 -11.77563 -11.74204 -11.39678 -11.19578 -10.77284 -10.56439 -9.90069 -9.78534 -8.17966 -6.28783 -1.08610 -0.72019 0.08274 0.57761 1.06599 1.42437 1.45074 1.53692 1.94884 2.43043 2.60600 2.96226 3.14136 3.27790 3.63589 3.76975 3.81709 3.98384 4.15864 4.21746 4.28750 4.33344 4.47668 4.64905 4.71354 4.83329 4.88530 4.91743 5.09416 5.16100 5.22363 5.28851 5.33960 5.39003 5.46221 5.69534 5.86701 6.11343 6.78710 7.39747 8.89865 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.005547 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.714119 B = 5046.505483 C = 5805.460705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.099 3.901 3 C -0.059 4.059 4 C -0.791 4.791 5 S 2.720 3.280 6 O -0.967 6.967 7 O -0.971 6.971 8 N -0.974 5.974 9 C 0.273 3.727 10 C -0.547 4.547 11 H 0.055 0.945 12 C 0.017 3.983 13 N -0.922 5.922 14 Si 0.952 3.048 15 H -0.279 1.279 16 H -0.277 1.277 17 H -0.265 1.265 18 C 0.143 3.857 19 C -0.195 4.195 20 C -0.177 4.177 21 C -0.153 4.153 22 S 0.375 5.625 23 N -0.453 5.453 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.179 0.821 28 H 0.021 0.979 29 H 0.033 0.967 30 H 0.267 0.733 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 -14.263 -1.914 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.099 4.099 4 C -1.003 5.003 5 S 2.805 3.195 6 O -0.958 6.958 7 O -0.962 6.962 8 N -0.813 5.813 9 C 0.150 3.850 10 C -0.586 4.586 11 H 0.074 0.926 12 C -0.183 4.183 13 N -0.561 5.561 14 Si 0.778 3.222 15 H -0.205 1.205 16 H -0.202 1.202 17 H -0.190 1.190 18 C 0.018 3.982 19 C -0.215 4.215 20 C -0.214 4.214 21 C -0.191 4.191 22 S 0.532 5.468 23 N -0.278 5.278 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.111 0.889 27 H 0.197 0.803 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.692 -15.874 -2.537 16.090 hybrid contribution -1.075 2.347 0.305 2.600 sum -1.767 -13.527 -2.231 13.823 Atomic orbital electron populations 1.20822 0.82814 1.05758 1.05349 1.22214 1.01341 0.86862 0.97389 1.21469 0.90205 1.02774 0.95492 1.37168 1.17921 1.22797 1.22444 1.01130 0.72744 0.72455 0.73163 1.93570 1.78232 1.46805 1.77155 1.93513 1.45480 1.79671 1.77491 1.57246 1.46132 1.47210 1.30708 1.18709 0.89973 0.83588 0.92749 1.21789 1.06925 0.94955 1.34922 0.92631 1.25659 0.95822 1.02127 0.94696 1.69999 1.19103 1.30606 1.36432 0.85640 0.79348 0.79551 0.77704 1.20488 1.20170 1.18977 1.21084 0.88347 0.92001 0.96766 1.22815 1.02309 1.00418 0.95953 1.23043 1.03215 1.02424 0.92708 1.23075 0.97707 0.96509 1.01803 1.83660 1.09001 0.90667 1.63432 1.76440 1.01985 1.27759 1.21614 0.88134 0.87722 0.88933 0.80324 0.96068 0.94891 0.92409 0.89417 0.88628 0.88706 0.88918 0.88599 0.87143 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 10.26 71.24 0.73 -0.62 16 2 C 0.10 2.47 6.72 42.72 0.29 2.75 16 3 C -0.06 -1.72 9.79 21.45 0.21 -1.51 16 4 C -0.79 -25.85 6.64 67.10 0.45 -25.40 16 5 S 2.72 107.73 5.81 -56.49 -0.33 107.40 16 6 O -0.97 -45.30 16.86 -128.00 -2.16 -47.46 16 7 O -0.97 -38.87 16.53 -128.00 -2.12 -40.98 16 8 N -0.97 -39.34 2.77 -519.84 -1.44 -40.78 16 9 C 0.27 13.27 5.10 85.63 0.44 13.70 16 10 C -0.55 -29.74 9.38 25.60 0.24 -29.50 16 11 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 12 C 0.02 0.92 5.46 84.65 0.46 1.38 16 13 N -0.92 -52.26 13.29 21.45 0.28 -51.98 16 14 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.14 4.82 5.96 86.38 0.51 5.34 16 19 C -0.19 -5.53 6.01 -10.79 -0.06 -5.60 16 20 C -0.18 -4.53 10.18 30.62 0.31 -4.22 16 21 C -0.15 -3.30 10.25 30.62 0.31 -2.99 16 22 S 0.37 10.58 23.37 -56.49 -1.32 9.26 16 23 N -0.45 -12.29 12.05 -52.59 -0.63 -12.92 16 24 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.10 1.28 8.12 -2.38 -0.02 1.26 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.18 4.87 8.06 -2.91 -0.02 4.84 16 28 H 0.02 1.10 7.61 -2.39 -0.02 1.08 16 29 H 0.03 1.64 8.11 -2.38 -0.02 1.62 16 30 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.09 3.02 7.84 -2.39 -0.02 3.00 16 32 H 0.10 2.98 6.91 -2.39 -0.02 2.97 16 33 H 0.09 2.74 7.84 -2.39 -0.02 2.72 16 34 H 0.09 2.48 8.03 -2.39 -0.02 2.46 16 35 H 0.10 2.29 8.14 -2.39 -0.02 2.28 16 36 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -66.99 346.65 -0.72 -67.71 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.08 Total: 11.02 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 3.89 Total: -46.66 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -1.79 Total: -105.68 kcal Atomic # 8 Polarization: -84.16 SS G_CDS: -4.27 Total: -88.44 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 118.31 SS G_CDS: -1.65 Total: 116.66 kcal Total: -66.99 -0.72 -67.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.702 kcal (2) G-P(sol) polarization free energy of solvation -66.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds