Wall clock time and date at job start Tue Mar 31 2020 10:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37809 * 121.55887 * 2 1 4 4 C 1.35137 * 114.76046 * 180.21031 * 3 2 1 5 5 S 1.76205 * 127.24674 * 179.86599 * 4 3 2 6 6 O 1.42093 * 106.40405 * 336.17008 * 5 4 3 7 7 O 1.42103 * 106.39906 * 203.24680 * 5 4 3 8 8 N 1.65603 * 107.21742 * 89.71237 * 5 4 3 9 9 C 1.36944 * 119.99522 * 263.43377 * 8 5 4 10 10 H 1.07993 * 119.99840 * 127.85969 * 9 8 5 11 11 C 1.38817 * 119.99551 * 307.84955 * 9 8 5 12 12 N 1.31621 * 119.99578 * 155.59861 * 11 9 8 13 13 Si 1.86798 * 120.00203 * 335.60045 * 11 9 8 14 14 H 1.48501 * 109.47177 * 94.64865 * 13 11 9 15 15 H 1.48500 * 109.46964 * 214.64830 * 13 11 9 16 16 H 1.48501 * 109.47020 * 334.64520 * 13 11 9 17 17 C 1.46498 * 120.00395 * 83.42340 * 8 5 4 18 18 C 1.55238 * 110.58396 * 240.12359 * 17 8 5 19 19 C 1.54894 * 102.58600 * 203.33974 * 18 17 8 20 20 C 1.54265 * 104.31502 * 37.93448 * 19 18 17 21 21 C 1.53881 * 106.59730 * 336.32135 * 20 19 18 22 22 S 1.72053 * 105.50266 * 359.60623 * 4 3 2 23 23 N 1.30079 * 121.56003 * 179.75346 * 2 1 3 24 24 H 1.08997 * 109.46551 * 270.22082 * 1 2 3 25 25 H 1.08998 * 109.46845 * 30.22134 * 1 2 3 26 26 H 1.08999 * 109.47089 * 150.22259 * 1 2 3 27 27 H 1.08002 * 122.62041 * 0.04114 * 3 2 1 28 28 H 0.96997 * 120.00073 * 180.02562 * 12 11 9 29 29 H 1.09006 * 110.43304 * 2.71351 * 17 8 5 30 30 H 1.09000 * 110.89581 * 85.04798 * 18 17 8 31 31 H 1.09000 * 110.76695 * 321.57307 * 18 17 8 32 32 H 1.08999 * 110.48244 * 279.18849 * 19 18 17 33 33 H 1.08998 * 110.48301 * 156.68009 * 19 18 17 34 34 H 1.08996 * 110.03535 * 95.60396 * 20 19 18 35 35 H 1.08997 * 110.03363 * 216.99458 * 20 19 18 36 36 H 1.09002 * 110.03029 * 119.28071 * 21 20 19 37 37 H 1.08997 * 110.03227 * 240.66827 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5702 1.0143 -0.0045 5 16 4.7952 2.2809 -0.0092 6 8 4.1760 3.4359 -0.5583 7 8 5.9726 1.6982 -0.5510 8 7 5.1356 2.6394 1.5713 9 6 4.5195 3.6997 2.1809 10 1 4.0141 3.5605 3.1250 11 6 4.5450 4.9532 1.5852 12 7 3.6076 5.8338 1.8648 13 14 5.9095 5.3903 0.3867 14 1 5.4538 5.1230 -1.0012 15 1 6.2499 6.8289 0.5274 16 1 7.1096 4.5666 0.6811 17 6 6.0957 1.8222 2.3175 18 6 5.4161 1.1741 3.5537 19 6 6.6163 0.9003 4.4937 20 6 7.5387 2.1217 4.3004 21 6 7.2076 2.7078 2.9167 22 16 3.8306 -0.6864 0.0028 23 7 2.1879 -1.1084 0.0048 24 1 -0.3632 0.0040 1.0277 25 1 -0.3633 0.8880 -0.5173 26 1 -0.3633 -0.8920 -0.5104 27 1 1.7579 2.1465 0.0007 28 1 3.6251 6.7097 1.4483 29 1 6.5248 1.0553 1.6726 30 1 4.9190 0.2433 3.2807 31 1 4.7135 1.8673 4.0161 32 1 7.1295 -0.0155 4.2002 33 1 6.2825 0.8344 5.5292 34 1 7.3446 2.8626 5.0759 35 1 8.5826 1.8103 4.3347 36 1 6.8528 3.7332 3.0208 37 1 8.0912 2.6816 2.2790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601351308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:14 Heat of formation + Delta-G solvation = -32.879399 kcal Electronic energy + Delta-G solvation = -23467.931382 eV Core-core repulsion = 20078.002105 eV Total energy + Delta-G solvation = -3389.929277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.71095 -38.08950 -36.03284 -34.68932 -34.28697 -32.07387 -31.17177 -29.46067 -28.18048 -27.18590 -24.33101 -23.39126 -20.20904 -19.59416 -19.58021 -19.08288 -18.37775 -17.01223 -16.27457 -16.03003 -15.28529 -14.93629 -14.51845 -14.36795 -13.98559 -13.83892 -13.26770 -12.83071 -12.72823 -12.61478 -12.51632 -12.33757 -12.08669 -11.64878 -11.60674 -11.17499 -11.01708 -10.86730 -10.75161 -10.72741 -10.66835 -10.43654 -10.21443 -10.19758 -10.04703 -9.87719 -9.63461 -9.55119 -8.94375 -8.29576 -8.04255 -6.83594 -4.43652 0.71139 1.45609 1.84611 2.15365 2.64061 3.18167 3.30765 3.41242 4.01686 4.20595 4.65287 4.75909 4.95657 5.11621 5.17723 5.33993 5.34912 5.41906 5.57250 5.59010 5.81335 5.89822 5.97803 6.03462 6.06501 6.09904 6.17075 6.24178 6.32792 6.33000 6.40666 6.64033 6.79258 6.84487 6.86896 7.12220 7.50571 7.95020 8.66775 8.86016 10.16351 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.007658 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.843622 B = 3655.519171 C = 4635.611350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.096 3.904 3 C -0.092 4.092 4 C -0.717 4.717 5 S 2.497 3.503 6 O -0.947 6.947 7 O -0.995 6.995 8 N -0.812 5.812 9 C -0.236 4.236 10 H 0.100 0.900 11 C 0.099 3.901 12 N -0.791 5.791 13 Si 0.839 3.161 14 H -0.234 1.234 15 H -0.278 1.278 16 H -0.249 1.249 17 C 0.154 3.846 18 C -0.137 4.137 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.127 4.127 22 S 0.313 5.687 23 N -0.466 5.466 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.166 0.834 28 H 0.288 0.712 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 -6.666 3.112 7.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.128 4.128 4 C -0.920 4.920 5 S 2.598 3.402 6 O -0.936 6.936 7 O -0.985 6.985 8 N -0.634 5.634 9 C -0.390 4.390 10 H 0.118 0.882 11 C -0.122 4.122 12 N -0.425 5.425 13 Si 0.662 3.338 14 H -0.159 1.159 15 H -0.205 1.205 16 H -0.173 1.173 17 C 0.046 3.954 18 C -0.176 4.176 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.167 4.167 22 S 0.469 5.531 23 N -0.290 5.290 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.183 0.817 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.156 -8.541 2.034 8.855 hybrid contribution -0.975 1.545 -0.496 1.893 sum 0.181 -6.996 1.538 7.165 Atomic orbital electron populations 1.20536 0.86609 1.03646 1.03515 1.21759 0.99061 0.88572 0.98809 1.21003 0.91116 1.00798 0.99913 1.38401 1.18288 1.21108 1.14231 1.13434 0.73545 0.73578 0.79597 1.93442 1.77359 1.45171 1.77589 1.93367 1.45992 1.78854 1.80239 1.53298 1.45040 1.33255 1.31835 1.18939 1.30675 0.83550 1.05871 0.88217 1.25863 0.95932 0.95146 0.95237 1.69802 1.27756 1.07187 1.37798 0.87386 0.82165 0.79523 0.84683 1.15851 1.20477 1.17274 1.21751 0.88585 0.92300 0.92772 1.22955 0.97863 1.00327 0.96460 1.22278 0.96609 0.97901 0.99226 1.22065 0.98598 0.97350 0.97628 1.22462 0.97449 1.01711 0.95039 1.83545 1.08935 0.94999 1.65642 1.76358 1.02094 1.27336 1.23174 0.89950 0.89977 0.90646 0.81699 0.90187 0.89729 0.92369 0.89692 0.92110 0.92094 0.91859 0.92536 0.89135 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.27 36.01 0.37 -0.62 16 2 C 0.10 1.64 6.72 -83.49 -0.56 1.08 16 3 C -0.09 -1.76 9.79 -40.84 -0.40 -2.16 16 4 C -0.72 -15.07 6.64 29.63 0.20 -14.87 16 5 S 2.50 59.58 4.61 -107.50 -0.50 59.08 16 6 O -0.95 -24.98 12.37 -57.17 -0.71 -25.69 16 7 O -1.00 -24.88 16.76 -57.17 -0.96 -25.84 16 8 N -0.81 -17.96 2.16 -51.63 -0.11 -18.07 16 9 C -0.24 -5.53 7.78 -15.05 -0.12 -5.64 16 10 H 0.10 2.34 7.05 -52.49 -0.37 1.97 16 11 C 0.10 2.48 4.51 -17.43 -0.08 2.40 16 12 N -0.79 -20.12 13.97 55.49 0.78 -19.35 16 13 Si 0.84 20.29 25.12 -169.99 -4.27 16.01 16 14 H -0.23 -6.11 6.11 56.52 0.35 -5.76 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.25 -5.78 7.11 56.52 0.40 -5.38 16 17 C 0.15 2.90 3.24 -66.08 -0.21 2.68 16 18 C -0.14 -2.21 6.47 -24.55 -0.16 -2.37 16 19 C -0.12 -1.63 6.82 -25.07 -0.17 -1.80 16 20 C -0.12 -1.64 6.80 -25.61 -0.17 -1.81 16 21 C -0.13 -2.21 6.41 -25.61 -0.16 -2.38 16 22 S 0.31 5.90 23.67 -107.50 -2.54 3.35 16 23 N -0.47 -8.46 12.05 32.03 0.39 -8.08 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 0.87 8.12 -51.93 -0.42 0.44 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.17 3.05 8.06 -52.49 -0.42 2.63 16 28 H 0.29 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.08 1.58 7.13 -51.93 -0.37 1.21 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.45 6.72 -51.93 -0.35 1.10 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.71 6.68 -51.93 -0.35 1.37 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -28.44 323.68 -9.37 -37.81 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.85 Total: 1.36 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -1.47 Total: -25.48 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 1.05 Total: -45.49 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -1.67 Total: -51.52 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.27 Total: 16.01 kcal Atomic # 16 Polarization: 65.48 SS G_CDS: -3.04 Total: 62.44 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.44 -9.37 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601351308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.934 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds