Wall clock time and date at job start Tue Mar 31 2020 10:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37809 * 121.55887 * 2 1 4 4 C 1.35137 * 114.76046 * 180.21031 * 3 2 1 5 5 S 1.76205 * 127.24674 * 179.86599 * 4 3 2 6 6 O 1.42093 * 106.40405 * 336.17008 * 5 4 3 7 7 O 1.42103 * 106.39906 * 203.24680 * 5 4 3 8 8 N 1.65603 * 107.21742 * 89.71237 * 5 4 3 9 9 C 1.36944 * 119.99522 * 263.43377 * 8 5 4 10 10 H 1.07993 * 119.99840 * 127.85969 * 9 8 5 11 11 C 1.38817 * 119.99551 * 307.84955 * 9 8 5 12 12 N 1.31621 * 119.99578 * 155.59861 * 11 9 8 13 13 Si 1.86798 * 120.00203 * 335.60045 * 11 9 8 14 14 H 1.48501 * 109.47177 * 94.64865 * 13 11 9 15 15 H 1.48500 * 109.46964 * 214.64830 * 13 11 9 16 16 H 1.48501 * 109.47020 * 334.64520 * 13 11 9 17 17 C 1.46498 * 120.00395 * 83.42340 * 8 5 4 18 18 C 1.55238 * 110.58396 * 240.12359 * 17 8 5 19 19 C 1.54894 * 102.58600 * 203.33974 * 18 17 8 20 20 C 1.54265 * 104.31502 * 37.93448 * 19 18 17 21 21 C 1.53881 * 106.59730 * 336.32135 * 20 19 18 22 22 S 1.72053 * 105.50266 * 359.60623 * 4 3 2 23 23 N 1.30079 * 121.56003 * 179.75346 * 2 1 3 24 24 H 1.08997 * 109.46551 * 270.22082 * 1 2 3 25 25 H 1.08998 * 109.46845 * 30.22134 * 1 2 3 26 26 H 1.08999 * 109.47089 * 150.22259 * 1 2 3 27 27 H 1.08002 * 122.62041 * 0.04114 * 3 2 1 28 28 H 0.96997 * 120.00073 * 180.02562 * 12 11 9 29 29 H 1.09006 * 110.43304 * 2.71351 * 17 8 5 30 30 H 1.09000 * 110.89581 * 85.04798 * 18 17 8 31 31 H 1.09000 * 110.76695 * 321.57307 * 18 17 8 32 32 H 1.08999 * 110.48244 * 279.18849 * 19 18 17 33 33 H 1.08998 * 110.48301 * 156.68009 * 19 18 17 34 34 H 1.08996 * 110.03535 * 95.60396 * 20 19 18 35 35 H 1.08997 * 110.03363 * 216.99458 * 20 19 18 36 36 H 1.09002 * 110.03029 * 119.28071 * 21 20 19 37 37 H 1.08997 * 110.03227 * 240.66827 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5702 1.0143 -0.0045 5 16 4.7952 2.2809 -0.0092 6 8 4.1760 3.4359 -0.5583 7 8 5.9726 1.6982 -0.5510 8 7 5.1356 2.6394 1.5713 9 6 4.5195 3.6997 2.1809 10 1 4.0141 3.5605 3.1250 11 6 4.5450 4.9532 1.5852 12 7 3.6076 5.8338 1.8648 13 14 5.9095 5.3903 0.3867 14 1 5.4538 5.1230 -1.0012 15 1 6.2499 6.8289 0.5274 16 1 7.1096 4.5666 0.6811 17 6 6.0957 1.8222 2.3175 18 6 5.4161 1.1741 3.5537 19 6 6.6163 0.9003 4.4937 20 6 7.5387 2.1217 4.3004 21 6 7.2076 2.7078 2.9167 22 16 3.8306 -0.6864 0.0028 23 7 2.1879 -1.1084 0.0048 24 1 -0.3632 0.0040 1.0277 25 1 -0.3633 0.8880 -0.5173 26 1 -0.3633 -0.8920 -0.5104 27 1 1.7579 2.1465 0.0007 28 1 3.6251 6.7097 1.4483 29 1 6.5248 1.0553 1.6726 30 1 4.9190 0.2433 3.2807 31 1 4.7135 1.8673 4.0161 32 1 7.1295 -0.0155 4.2002 33 1 6.2825 0.8344 5.5292 34 1 7.3446 2.8626 5.0759 35 1 8.5826 1.8103 4.3347 36 1 6.8528 3.7332 3.0208 37 1 8.0912 2.6816 2.2790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601351308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:13 Heat of formation + Delta-G solvation = -51.105412 kcal Electronic energy + Delta-G solvation = -23468.721721 eV Core-core repulsion = 20078.002105 eV Total energy + Delta-G solvation = -3390.719616 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.15213 -39.51093 -37.99453 -36.63255 -35.95018 -33.85541 -32.66387 -30.61173 -29.43960 -28.65067 -26.04079 -24.89304 -21.58379 -21.11787 -20.98176 -20.71853 -19.98530 -18.77443 -17.91774 -17.72165 -17.02204 -16.40578 -16.12046 -15.82517 -15.53712 -15.34992 -15.09488 -14.16824 -14.11310 -14.07443 -13.84949 -13.73423 -13.44566 -13.37764 -13.26056 -12.88225 -12.60390 -12.59819 -12.50759 -12.24646 -12.06382 -11.82713 -11.74837 -11.66551 -11.64333 -11.33724 -11.10085 -11.09447 -10.86763 -9.77261 -9.73688 -8.75755 -6.32533 -0.84343 -0.35950 0.29441 0.70749 1.20093 1.23801 1.35628 1.44047 2.18630 2.34710 2.75011 2.94849 3.57197 3.82445 3.86313 3.91306 3.97296 4.14181 4.33771 4.44500 4.57547 4.70250 4.72283 4.73821 4.76279 4.78336 4.95927 4.99596 5.11190 5.15419 5.24606 5.35906 5.47129 5.48825 5.54471 5.65682 5.86566 6.08063 6.78643 7.05532 8.28222 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.007658 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.843622 B = 3655.519171 C = 4635.611350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.101 3.899 3 C -0.086 4.086 4 C -0.751 4.751 5 S 2.508 3.492 6 O -0.979 6.979 7 O -1.013 7.013 8 N -0.816 5.816 9 C -0.230 4.230 10 H 0.098 0.902 11 C 0.081 3.919 12 N -0.818 5.818 13 Si 0.845 3.155 14 H -0.266 1.266 15 H -0.260 1.260 16 H -0.240 1.240 17 C 0.138 3.862 18 C -0.133 4.133 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.132 4.132 22 S 0.323 5.677 23 N -0.465 5.465 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.169 0.831 28 H 0.291 0.709 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 -8.384 4.345 9.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.124 4.124 4 C -0.958 4.958 5 S 2.612 3.388 6 O -0.968 6.968 7 O -1.003 7.003 8 N -0.639 5.639 9 C -0.383 4.383 10 H 0.116 0.884 11 C -0.137 4.137 12 N -0.454 5.454 13 Si 0.669 3.331 14 H -0.192 1.192 15 H -0.185 1.185 16 H -0.163 1.163 17 C 0.031 3.969 18 C -0.172 4.172 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.172 4.172 22 S 0.479 5.521 23 N -0.289 5.289 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.109 0.891 27 H 0.186 0.814 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.738 -10.225 3.304 10.771 hybrid contribution -0.916 1.909 -0.975 2.331 sum -0.178 -8.316 2.329 8.638 Atomic orbital electron populations 1.20771 0.82837 1.05395 1.05286 1.22299 1.01272 0.87182 0.97000 1.21305 0.90674 1.01980 0.98457 1.37948 1.18652 1.22033 1.17151 1.12407 0.73395 0.73354 0.79629 1.93403 1.77972 1.46911 1.78511 1.93337 1.47046 1.79203 1.80717 1.53235 1.45730 1.33683 1.31216 1.18815 1.30439 0.83474 1.05576 0.88417 1.26101 0.96297 0.95735 0.95589 1.69803 1.28533 1.07799 1.39227 0.87276 0.82419 0.80825 0.82609 1.19237 1.18519 1.16323 1.22127 0.88781 0.92412 0.93538 1.22909 0.98754 0.99884 0.95662 1.22283 0.95080 0.98224 0.99628 1.22047 1.00086 0.97615 0.95227 1.22504 0.96732 1.00617 0.97334 1.83438 1.09871 0.93113 1.65717 1.76431 1.01556 1.27601 1.23289 0.87973 0.88120 0.89068 0.81392 0.89834 0.89896 0.91883 0.90842 0.90501 0.90019 0.91149 0.90288 0.91103 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 10.27 71.24 0.73 -0.97 16 2 C 0.10 3.20 6.72 42.72 0.29 3.48 16 3 C -0.09 -3.21 9.79 21.45 0.21 -3.00 16 4 C -0.75 -31.26 6.64 67.11 0.45 -30.81 16 5 S 2.51 121.15 4.61 -56.49 -0.26 120.89 16 6 O -0.98 -52.93 12.37 -128.00 -1.58 -54.51 16 7 O -1.01 -51.33 16.76 -128.00 -2.15 -53.47 16 8 N -0.82 -36.23 2.16 -317.27 -0.68 -36.92 16 9 C -0.23 -10.89 7.78 84.03 0.65 -10.24 16 10 H 0.10 4.64 7.05 -2.91 -0.02 4.62 16 11 C 0.08 4.13 4.51 84.86 0.38 4.51 16 12 N -0.82 -42.19 13.97 21.65 0.30 -41.89 16 13 Si 0.85 41.48 25.12 68.60 1.72 43.20 16 14 H -0.27 -14.44 6.11 99.48 0.61 -13.84 16 15 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.24 -11.25 7.11 99.48 0.71 -10.54 16 17 C 0.14 5.12 3.24 46.19 0.15 5.27 16 18 C -0.13 -4.08 6.47 32.01 0.21 -3.87 16 19 C -0.11 -2.69 6.82 31.67 0.22 -2.47 16 20 C -0.11 -2.80 6.80 31.32 0.21 -2.59 16 21 C -0.13 -4.49 6.41 31.32 0.20 -4.29 16 22 S 0.32 11.77 23.67 -56.49 -1.34 10.43 16 23 N -0.46 -15.85 12.05 -52.59 -0.63 -16.48 16 24 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.10 1.76 8.12 -2.39 -0.02 1.74 16 26 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.17 6.08 8.06 -2.91 -0.02 6.06 16 28 H 0.29 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.08 3.07 7.13 -2.38 -0.02 3.06 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 2.42 6.72 -2.39 -0.02 2.41 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 2.68 6.68 -2.39 -0.02 2.66 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -61.76 323.68 0.06 -61.70 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.98 Total: 12.01 kcal Atomic # 6 Polarization: -48.66 SS G_CDS: 3.70 Total: -44.96 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -1.02 Total: -95.29 kcal Atomic # 8 Polarization: -104.26 SS G_CDS: -3.73 Total: -107.98 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.72 Total: 43.20 kcal Atomic # 16 Polarization: 132.92 SS G_CDS: -1.60 Total: 131.32 kcal Total: -61.76 0.06 -61.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601351308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.590 kcal (2) G-P(sol) polarization free energy of solvation -61.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds