Wall clock time and date at job start Tue Mar 31 2020 10:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37815 * 121.55920 * 2 1 4 4 C 1.35132 * 114.76073 * 179.72930 * 3 2 1 5 5 S 1.76196 * 127.24913 * 180.02562 * 4 3 2 6 6 O 1.42103 * 106.40434 * 203.53956 * 5 4 3 7 7 O 1.42096 * 106.40284 * 336.45607 * 5 4 3 8 8 N 1.65597 * 107.21937 * 89.99809 * 5 4 3 9 9 C 1.46933 * 120.63020 * 269.71868 * 8 5 4 10 10 C 1.53623 * 108.54292 * 126.36885 * 9 8 5 11 11 C 1.53048 * 109.24213 * 54.85455 * 10 9 8 12 12 C 1.53038 * 109.53968 * 298.51532 * 11 10 9 13 13 H 1.09003 * 109.49588 * 301.41300 * 12 11 10 14 14 C 1.50697 * 109.49665 * 181.31432 * 12 11 10 15 15 H 1.08001 * 119.99995 * 240.15998 * 14 12 11 16 16 C 1.37875 * 119.99980 * 60.16182 * 14 12 11 17 17 N 1.31514 * 120.00273 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00030 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47064 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47136 * 119.99880 * 18 16 14 21 21 H 1.48504 * 109.46995 * 239.99793 * 18 16 14 22 22 C 1.46931 * 120.63374 * 90.00044 * 8 5 4 23 23 S 1.72051 * 105.50249 * 359.97438 * 4 3 2 24 24 N 1.30080 * 121.55845 * 179.71171 * 2 1 3 25 25 H 1.09004 * 109.46833 * 89.99927 * 1 2 3 26 26 H 1.08996 * 109.46875 * 209.99912 * 1 2 3 27 27 H 1.09000 * 109.47231 * 330.00589 * 1 2 3 28 28 H 1.08005 * 122.61706 * 359.74654 * 3 2 1 29 29 H 1.09000 * 109.58646 * 246.19983 * 9 8 5 30 30 H 1.08993 * 109.58424 * 6.62825 * 9 8 5 31 31 H 1.09000 * 109.63215 * 294.86964 * 10 9 8 32 32 H 1.08996 * 109.45743 * 174.74336 * 10 9 8 33 33 H 1.08992 * 109.45958 * 178.48861 * 11 10 9 34 34 H 1.09005 * 109.44310 * 58.52358 * 11 10 9 35 35 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.58481 * 353.37399 * 22 8 5 37 37 H 1.08998 * 109.58539 * 113.79625 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5701 1.0144 0.0058 5 16 4.7951 2.2808 0.0082 6 8 5.9746 1.6993 -0.5302 7 8 4.1781 3.4369 -0.5411 8 7 5.1295 2.6364 1.5906 9 6 4.3760 3.6804 2.2986 10 6 3.8060 3.0793 3.5924 11 6 4.9459 2.4647 4.4080 12 6 5.6027 1.3406 3.6035 13 1 4.8565 0.5849 3.3581 14 6 6.7038 0.7148 4.4201 15 1 7.7203 0.7271 4.0554 16 6 6.4136 0.1265 5.6328 17 7 5.1757 0.1110 6.0766 18 14 7.7786 -0.6486 6.6454 19 1 9.0713 -0.5001 5.9296 20 1 7.8620 0.0284 7.9645 21 1 7.4876 -2.0909 6.8467 22 6 6.1893 1.9182 2.3116 23 16 3.8305 -0.6863 0.0118 24 7 2.1878 -1.1084 0.0056 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.7578 2.1465 -0.0040 29 1 5.0401 4.5104 2.5398 30 1 3.5604 4.0337 1.6679 31 1 3.0768 2.3071 3.3471 32 1 3.3233 3.8636 4.1753 33 1 4.5492 2.0608 5.3393 34 1 5.6870 3.2322 4.6314 35 1 4.9716 -0.3025 6.9299 36 1 6.5704 1.1085 1.6893 37 1 6.9982 2.6075 2.5537 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601461765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:07 Heat of formation + Delta-G solvation = -41.681207 kcal Electronic energy + Delta-G solvation = -22947.810640 eV Core-core repulsion = 19557.499688 eV Total energy + Delta-G solvation = -3390.310952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.20249 -37.82824 -37.14501 -35.77560 -33.39822 -31.78426 -31.20498 -30.18832 -29.80851 -25.19622 -24.18914 -23.65496 -21.78123 -20.13444 -19.60546 -18.91675 -18.25097 -17.34154 -16.67249 -16.22608 -15.56965 -14.89838 -14.68778 -14.44480 -14.06668 -13.60861 -13.33142 -13.20797 -12.90808 -12.86888 -12.77631 -12.66300 -12.28670 -12.06547 -11.90042 -11.66511 -11.45964 -11.35624 -11.04386 -10.93068 -10.75057 -10.57622 -10.33443 -10.25324 -10.00879 -9.90074 -9.47677 -8.91840 -8.67344 -8.54405 -8.27635 -6.07632 -4.15085 0.12046 0.51966 1.29521 1.71807 2.15398 3.10371 3.25369 3.34303 3.38254 3.78602 4.36699 4.43461 4.69271 4.88098 5.08943 5.09804 5.23324 5.30760 5.35622 5.49342 5.57453 5.69883 5.88209 5.89502 6.15802 6.23225 6.37066 6.43770 6.50004 6.55167 6.75420 6.89282 7.10989 7.34574 7.64084 7.84498 8.01524 8.31764 8.88716 9.50631 10.97782 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.005344 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.880789 B = 5237.876618 C = 5837.065272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.090 3.910 3 C -0.065 4.065 4 C -0.780 4.780 5 S 2.715 3.285 6 O -0.947 6.947 7 O -0.954 6.954 8 N -0.983 5.983 9 C 0.123 3.877 10 C -0.135 4.135 11 C -0.110 4.110 12 C 0.038 3.962 13 H 0.029 0.971 14 C -0.516 4.516 15 H 0.060 0.940 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.122 3.878 23 S 0.399 5.601 24 N -0.445 5.445 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.167 0.833 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.038 0.962 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 3.912 -9.964 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.105 4.105 4 C -0.990 4.990 5 S 2.798 3.202 6 O -0.937 6.937 7 O -0.944 6.944 8 N -0.824 5.824 9 C -0.002 4.002 10 C -0.174 4.174 11 C -0.149 4.149 12 C 0.018 3.982 13 H 0.047 0.953 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.720 3.280 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.002 4.002 23 S 0.557 5.443 24 N -0.271 5.271 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.185 0.815 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.766 2.116 -10.554 12.714 hybrid contribution -0.727 0.650 1.058 1.439 sum -7.493 2.766 -9.496 12.409 Atomic orbital electron populations 1.20579 0.86042 1.04324 1.03593 1.21681 0.99439 0.88009 0.99489 1.20978 0.90292 1.01318 0.97894 1.37353 1.17530 1.23100 1.21050 1.01582 0.72700 0.72811 0.73108 1.93600 1.44104 1.79123 1.76913 1.93550 1.78270 1.45836 1.76776 1.57651 1.46476 1.47765 1.30502 1.21587 0.95012 0.89137 0.94431 1.22091 0.99872 0.99694 0.95735 1.21588 0.94993 0.97245 1.01025 1.18999 0.95906 0.93500 0.89752 0.95270 1.21123 0.94162 1.36345 1.03841 0.92206 1.24931 0.95422 0.95796 0.97577 1.69877 1.17852 1.44463 1.20459 0.86544 0.82391 0.79002 0.80110 1.19638 1.21058 1.21069 1.21958 0.87727 0.95049 0.95426 1.84050 1.07872 0.91368 1.60968 1.76384 1.02509 1.27522 1.20648 0.89894 0.90055 0.89740 0.81522 0.90932 0.90485 0.92598 0.92402 0.88699 0.94360 0.93009 0.90443 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.27 36.01 0.37 -0.37 16 2 C 0.09 1.19 6.72 -83.49 -0.56 0.63 16 3 C -0.06 -0.87 9.78 -40.84 -0.40 -1.27 16 4 C -0.78 -12.13 6.64 29.63 0.20 -11.93 16 5 S 2.71 44.91 5.86 -107.50 -0.63 44.28 16 6 O -0.95 -17.59 16.69 -57.17 -0.95 -18.55 16 7 O -0.95 -16.22 16.60 -57.17 -0.95 -17.17 16 8 N -0.98 -16.73 3.28 -113.27 -0.37 -17.11 16 9 C 0.12 1.88 6.41 -3.48 -0.02 1.86 16 10 C -0.13 -2.28 6.10 -26.38 -0.16 -2.45 16 11 C -0.11 -2.35 4.96 -26.69 -0.13 -2.49 16 12 C 0.04 0.87 2.25 -91.66 -0.21 0.67 16 13 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.52 -13.21 8.56 -34.44 -0.29 -13.50 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.06 11.32 55.43 0.63 -23.44 16 18 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.12 2.37 5.60 -3.71 -0.02 2.35 16 23 S 0.40 6.38 23.67 -107.50 -2.54 3.83 16 24 N -0.44 -6.86 12.05 32.02 0.39 -6.47 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16 28 H 0.17 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.01 7.12 -51.93 -0.37 0.64 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 2.32 6.05 -51.93 -0.31 2.00 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.08 1.49 7.13 -51.93 -0.37 1.12 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -30.12 330.57 -10.62 -40.74 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.82 Total: -1.63 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -1.33 Total: -24.90 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.64 Total: -47.02 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.90 Total: -35.72 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 51.28 SS G_CDS: -3.17 Total: 48.11 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.12 -10.62 -40.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.943 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds