Wall clock time and date at job start Tue Mar 31 2020 10:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37815 * 121.55920 * 2 1 4 4 C 1.35132 * 114.76073 * 179.72930 * 3 2 1 5 5 S 1.76196 * 127.24913 * 180.02562 * 4 3 2 6 6 O 1.42103 * 106.40434 * 203.53956 * 5 4 3 7 7 O 1.42096 * 106.40284 * 336.45607 * 5 4 3 8 8 N 1.65597 * 107.21937 * 89.99809 * 5 4 3 9 9 C 1.46933 * 120.63020 * 269.71868 * 8 5 4 10 10 C 1.53623 * 108.54292 * 126.36885 * 9 8 5 11 11 C 1.53048 * 109.24213 * 54.85455 * 10 9 8 12 12 C 1.53038 * 109.53968 * 298.51532 * 11 10 9 13 13 H 1.09003 * 109.49588 * 301.41300 * 12 11 10 14 14 C 1.50697 * 109.49665 * 181.31432 * 12 11 10 15 15 H 1.08001 * 119.99995 * 240.15998 * 14 12 11 16 16 C 1.37875 * 119.99980 * 60.16182 * 14 12 11 17 17 N 1.31514 * 120.00273 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00030 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47064 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47136 * 119.99880 * 18 16 14 21 21 H 1.48504 * 109.46995 * 239.99793 * 18 16 14 22 22 C 1.46931 * 120.63374 * 90.00044 * 8 5 4 23 23 S 1.72051 * 105.50249 * 359.97438 * 4 3 2 24 24 N 1.30080 * 121.55845 * 179.71171 * 2 1 3 25 25 H 1.09004 * 109.46833 * 89.99927 * 1 2 3 26 26 H 1.08996 * 109.46875 * 209.99912 * 1 2 3 27 27 H 1.09000 * 109.47231 * 330.00589 * 1 2 3 28 28 H 1.08005 * 122.61706 * 359.74654 * 3 2 1 29 29 H 1.09000 * 109.58646 * 246.19983 * 9 8 5 30 30 H 1.08993 * 109.58424 * 6.62825 * 9 8 5 31 31 H 1.09000 * 109.63215 * 294.86964 * 10 9 8 32 32 H 1.08996 * 109.45743 * 174.74336 * 10 9 8 33 33 H 1.08992 * 109.45958 * 178.48861 * 11 10 9 34 34 H 1.09005 * 109.44310 * 58.52358 * 11 10 9 35 35 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.58481 * 353.37399 * 22 8 5 37 37 H 1.08998 * 109.58539 * 113.79625 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5701 1.0144 0.0058 5 16 4.7951 2.2808 0.0082 6 8 5.9746 1.6993 -0.5302 7 8 4.1781 3.4369 -0.5411 8 7 5.1295 2.6364 1.5906 9 6 4.3760 3.6804 2.2986 10 6 3.8060 3.0793 3.5924 11 6 4.9459 2.4647 4.4080 12 6 5.6027 1.3406 3.6035 13 1 4.8565 0.5849 3.3581 14 6 6.7038 0.7148 4.4201 15 1 7.7203 0.7271 4.0554 16 6 6.4136 0.1265 5.6328 17 7 5.1757 0.1110 6.0766 18 14 7.7786 -0.6486 6.6454 19 1 9.0713 -0.5001 5.9296 20 1 7.8620 0.0284 7.9645 21 1 7.4876 -2.0909 6.8467 22 6 6.1893 1.9182 2.3116 23 16 3.8305 -0.6863 0.0118 24 7 2.1878 -1.1084 0.0056 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.7578 2.1465 -0.0040 29 1 5.0401 4.5104 2.5398 30 1 3.5604 4.0337 1.6679 31 1 3.0768 2.3071 3.3471 32 1 3.3233 3.8636 4.1753 33 1 4.5492 2.0608 5.3393 34 1 5.6870 3.2322 4.6314 35 1 4.9716 -0.3025 6.9299 36 1 6.5704 1.1085 1.6893 37 1 6.9982 2.6075 2.5537 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601461765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:06 Heat of formation + Delta-G solvation = -61.681752 kcal Electronic energy + Delta-G solvation = -22948.677929 eV Core-core repulsion = 19557.499688 eV Total energy + Delta-G solvation = -3391.178241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28456 -39.33432 -38.50441 -37.14105 -35.21658 -32.89281 -32.74184 -31.87209 -30.66847 -27.03719 -25.38581 -25.03521 -23.35209 -21.38906 -20.90774 -20.21850 -19.60390 -18.76973 -18.08676 -17.86082 -16.97300 -16.53424 -15.90194 -15.53995 -15.44617 -15.18465 -14.84691 -14.44332 -14.36850 -14.22205 -13.86349 -13.67957 -13.44648 -13.42350 -13.35630 -12.93668 -12.83270 -12.73476 -12.68315 -12.57210 -12.50931 -11.87627 -11.79528 -11.70364 -11.61563 -11.41099 -11.03409 -10.75485 -10.41307 -9.86073 -9.81000 -8.06993 -6.20276 -1.05790 -0.74582 0.11902 0.59698 1.11239 1.41287 1.45142 1.54898 1.80139 2.45335 2.49139 3.19357 3.21058 3.65720 3.76967 3.85365 4.25673 4.27937 4.31700 4.36865 4.56164 4.61144 4.68067 4.74335 4.78489 4.88991 4.94541 5.10249 5.19142 5.28541 5.36104 5.42735 5.52002 5.66476 5.71874 6.00146 6.18554 6.40590 6.91248 7.47829 8.96661 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.005344 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.880789 B = 5237.876618 C = 5837.065272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.094 3.906 3 C -0.051 4.051 4 C -0.792 4.792 5 S 2.733 3.267 6 O -0.973 6.973 7 O -0.954 6.954 8 N -0.985 5.985 9 C 0.119 3.881 10 C -0.126 4.126 11 C -0.107 4.107 12 C 0.037 3.963 13 H -0.001 1.001 14 C -0.532 4.532 15 H 0.057 0.943 16 C 0.019 3.981 17 N -0.913 5.913 18 Si 0.947 3.053 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.286 1.286 22 C 0.132 3.868 23 S 0.340 5.660 24 N -0.461 5.461 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.204 0.796 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.037 0.963 35 H 0.259 0.741 36 H 0.072 0.928 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.394 5.601 -10.560 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.091 4.091 4 C -1.003 5.003 5 S 2.818 3.182 6 O -0.963 6.963 7 O -0.944 6.944 8 N -0.825 5.825 9 C -0.005 4.005 10 C -0.165 4.165 11 C -0.145 4.145 12 C 0.017 3.983 13 H 0.017 0.983 14 C -0.571 4.571 15 H 0.075 0.925 16 C -0.180 4.180 17 N -0.552 5.552 18 Si 0.774 3.226 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.213 1.213 22 C 0.007 3.993 23 S 0.498 5.502 24 N -0.286 5.286 25 H 0.125 0.875 26 H 0.099 0.901 27 H 0.131 0.869 28 H 0.221 0.779 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.207 3.817 -11.156 14.365 hybrid contribution -0.410 0.135 1.221 1.295 sum -8.616 3.951 -9.934 13.731 Atomic orbital electron populations 1.20834 0.82548 1.05695 1.05506 1.22468 1.01546 0.87288 0.97083 1.21517 0.89453 1.02964 0.95197 1.37179 1.18340 1.21950 1.22848 1.00912 0.72287 0.72507 0.72537 1.93566 1.45751 1.79567 1.77413 1.93543 1.78202 1.45996 1.76649 1.57602 1.46327 1.48001 1.30566 1.21824 0.96093 0.88790 0.93820 1.21986 0.98057 1.00113 0.96383 1.21411 0.96364 0.96678 1.00031 1.18924 0.94637 0.93419 0.91285 0.98318 1.21522 0.94886 1.36381 1.04282 0.92457 1.25608 0.97236 0.96476 0.98712 1.70008 1.19287 1.45253 1.20695 0.85669 0.80245 0.77917 0.78792 1.19067 1.20684 1.21256 1.21633 0.88349 0.95248 0.94025 1.84192 1.09742 0.92856 1.63427 1.76510 1.01658 1.28588 1.21830 0.87515 0.90127 0.86943 0.77938 0.89229 0.87438 0.93299 0.89709 0.92136 0.94433 0.93197 0.91004 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.27 71.24 0.73 -0.46 16 2 C 0.09 2.26 6.72 42.72 0.29 2.55 16 3 C -0.05 -1.23 9.78 21.45 0.21 -1.02 16 4 C -0.79 -23.79 6.64 67.10 0.45 -23.34 16 5 S 2.73 86.70 5.86 -56.49 -0.33 86.37 16 6 O -0.97 -36.04 16.69 -128.00 -2.14 -38.17 16 7 O -0.95 -29.71 16.60 -128.00 -2.12 -31.83 16 8 N -0.99 -32.13 3.28 -512.27 -1.68 -33.81 16 9 C 0.12 3.27 6.41 86.51 0.55 3.82 16 10 C -0.13 -4.04 6.10 30.82 0.19 -3.85 16 11 C -0.11 -4.54 4.96 30.62 0.15 -4.39 16 12 C 0.04 1.73 2.25 -11.47 -0.03 1.71 16 13 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 14 C -0.53 -27.78 8.56 25.60 0.22 -27.56 16 15 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 16 C 0.02 1.00 5.30 84.65 0.45 1.44 16 17 N -0.91 -50.66 11.32 21.45 0.24 -50.42 16 18 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 22 C 0.13 5.14 5.60 86.36 0.48 5.62 16 23 S 0.34 11.11 23.67 -56.49 -1.34 9.78 16 24 N -0.46 -14.02 12.05 -52.59 -0.63 -14.65 16 25 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.11 1.00 8.11 -2.39 -0.02 0.98 16 28 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.11 2.35 7.12 -2.39 -0.02 2.33 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 3.01 6.05 -2.39 -0.01 2.99 16 34 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 36 H 0.07 2.84 7.13 -2.39 -0.02 2.83 16 37 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -66.33 330.57 -1.20 -67.53 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.08 Total: 6.16 kcal Atomic # 6 Polarization: -49.17 SS G_CDS: 3.69 Total: -45.48 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -2.07 Total: -98.88 kcal Atomic # 8 Polarization: -65.74 SS G_CDS: -4.26 Total: -70.00 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 97.81 SS G_CDS: -1.67 Total: 96.14 kcal Total: -66.33 -1.20 -67.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.850 kcal (2) G-P(sol) polarization free energy of solvation -66.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds