Wall clock time and date at job start Tue Mar 31 2020 11:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86794 * 120.00217 * 2 1 4 4 H 1.48494 * 109.47425 * 275.12446 * 3 2 1 5 5 H 1.48500 * 109.47136 * 35.12865 * 3 2 1 6 6 H 1.48498 * 109.46929 * 155.12661 * 3 2 1 7 7 C 1.39087 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00110 * 341.15428 * 7 2 1 9 9 N 1.36810 * 119.99733 * 161.14900 * 7 2 1 10 10 C 1.34772 * 120.00088 * 316.27248 * 9 7 2 11 11 O 1.21596 * 120.00327 * 2.35970 * 10 9 7 12 12 C 1.47777 * 119.99669 * 182.35941 * 10 9 7 13 13 C 1.38504 * 119.28467 * 173.08386 * 12 10 9 14 14 C 1.40545 * 118.53289 * 180.30788 * 13 12 10 15 15 C 1.40288 * 122.08460 * 179.10977 * 14 13 12 16 16 C 1.36278 * 119.47992 * 180.02562 * 15 14 13 17 17 C 1.39297 * 120.97106 * 359.97438 * 16 15 14 18 18 C 1.36312 * 121.08939 * 359.97438 * 17 16 15 19 19 C 1.40175 * 119.58205 * 0.30399 * 18 17 16 20 20 C 1.40879 * 121.86673 * 179.69876 * 19 18 17 21 21 Cl 1.73604 * 119.88858 * 0.04163 * 20 19 18 22 22 N 1.30981 * 120.22105 * 180.02562 * 20 19 18 23 23 C 1.46502 * 119.99271 * 136.26735 * 9 7 2 24 24 C 1.52995 * 117.50448 * 1.30689 * 23 9 7 25 25 C 1.52998 * 117.50088 * 292.64096 * 23 9 7 26 26 H 0.97010 * 120.00095 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.72802 * 359.44800 * 13 12 10 28 28 H 1.07995 * 120.25426 * 0.02562 * 15 14 13 29 29 H 1.07996 * 119.51300 * 179.97438 * 16 15 14 30 30 H 1.07997 * 119.45576 * 180.02562 * 17 16 15 31 31 H 1.08003 * 120.20884 * 180.02562 * 18 17 16 32 32 H 1.09004 * 115.54507 * 146.97746 * 23 9 7 33 33 H 1.09006 * 117.49639 * 359.97438 * 24 23 9 34 34 H 1.08995 * 117.50045 * 145.01746 * 24 23 9 35 35 H 1.09004 * 117.50080 * 214.98259 * 25 23 9 36 36 H 1.08993 * 117.50024 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6176 0.0000 4 1 2.3866 2.1089 -1.3944 5 1 1.5033 2.6189 0.8056 6 1 3.5949 1.4111 0.5889 7 6 2.0087 -1.2046 -0.0005 8 1 1.5121 -2.1150 0.3012 9 7 3.3218 -1.2362 -0.3834 10 6 3.7232 -0.5496 -1.4714 11 8 2.9273 0.1324 -2.0879 12 6 5.1307 -0.6256 -1.9152 13 6 5.4964 -0.0335 -3.1127 14 6 6.8379 -0.1210 -3.5227 15 6 7.2858 0.4355 -4.7301 16 6 8.5988 0.3189 -5.0760 17 6 9.5020 -0.3439 -4.2482 18 6 9.1011 -0.8953 -3.0678 19 6 7.7571 -0.8007 -2.6810 20 6 7.2893 -1.3583 -1.4747 21 17 8.3908 -2.1895 -0.4214 22 7 6.0261 -1.2513 -1.1452 23 6 4.2914 -2.0165 0.3895 24 6 3.7681 -2.7983 1.5961 25 6 4.6128 -1.5392 1.8072 26 1 -0.4851 0.8401 0.0004 27 1 4.7641 0.4721 -3.7246 28 1 6.5955 0.9521 -5.3804 29 1 8.9441 0.7466 -6.0056 30 1 10.5372 -0.4216 -4.5461 31 1 9.8136 -1.4057 -2.4366 32 1 5.1015 -2.4633 -0.1869 33 1 2.7023 -2.7318 1.8151 34 1 4.2341 -3.7592 1.8137 35 1 5.6342 -1.6725 2.1637 36 1 4.1032 -0.6446 2.1647 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706768817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:53 Heat of formation + Delta-G solvation = 76.460872 kcal Electronic energy + Delta-G solvation = -23883.059467 eV Core-core repulsion = 20360.383882 eV Total energy + Delta-G solvation = -3522.675585 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93380 -39.08296 -37.29867 -36.65763 -36.26486 -33.09201 -32.70737 -31.78613 -31.14345 -29.65710 -25.87940 -24.16868 -23.75355 -22.27230 -21.84896 -21.34202 -19.91333 -18.30772 -17.89616 -16.76585 -16.48422 -15.85532 -15.36506 -15.28229 -14.72448 -14.58645 -14.08229 -14.02132 -13.70653 -13.26111 -13.16713 -13.06297 -12.61783 -12.48957 -11.97681 -11.71125 -11.49778 -11.48298 -11.17544 -11.10530 -10.69734 -10.31681 -10.17846 -10.08254 -9.96485 -9.78513 -9.27753 -9.10180 -8.66331 -8.50625 -8.05164 -7.50346 -6.34678 -4.04858 0.15029 0.64653 1.67668 1.74420 2.62444 3.33095 3.46727 3.59498 3.68830 4.08582 4.23991 4.41739 4.46709 4.51571 4.62343 4.76213 4.81076 4.88035 5.04842 5.09215 5.19478 5.38092 5.61991 5.70944 5.74101 5.81714 5.87353 5.91713 6.00876 6.20658 6.26381 6.34647 6.42536 6.56824 6.64260 6.94919 7.01434 7.65695 7.69884 7.94162 8.65098 8.78198 9.26822 9.70883 10.68510 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.005546 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.041048 B = 5047.232527 C = 6330.367385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.093 3.907 3 Si 0.911 3.089 4 H -0.252 1.252 5 H -0.306 1.306 6 H -0.277 1.277 7 C -0.337 4.337 8 H 0.104 0.896 9 N -0.400 5.400 10 C 0.479 3.521 11 O -0.545 6.545 12 C 0.104 3.896 13 C -0.105 4.105 14 C -0.017 4.017 15 C -0.103 4.103 16 C -0.100 4.100 17 C -0.119 4.119 18 C -0.086 4.086 19 C -0.096 4.096 20 C 0.204 3.796 21 Cl -0.027 7.027 22 N -0.445 5.445 23 C 0.068 3.932 24 C -0.185 4.185 25 C -0.188 4.188 26 H 0.276 0.724 27 H 0.157 0.843 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.149 0.851 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.768 -1.850 -5.894 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.118 4.118 3 Si 0.741 3.259 4 H -0.177 1.177 5 H -0.235 1.235 6 H -0.202 1.202 7 C -0.463 4.463 8 H 0.121 0.879 9 N -0.115 5.115 10 C 0.270 3.730 11 O -0.430 6.430 12 C -0.022 4.022 13 C -0.127 4.127 14 C -0.022 4.022 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.138 4.138 18 C -0.106 4.106 19 C -0.100 4.100 20 C 0.024 3.976 21 Cl 0.002 6.998 22 N -0.158 5.158 23 C -0.037 4.037 24 C -0.223 4.223 25 C -0.227 4.227 26 H 0.086 0.914 27 H 0.175 0.825 28 H 0.154 0.846 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.165 0.835 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 18.768 -1.838 -5.322 19.595 hybrid contribution 0.757 1.030 -0.375 1.332 sum 19.525 -0.809 -5.697 20.355 Atomic orbital electron populations 1.69709 1.06938 1.28701 1.42905 1.25392 0.94973 0.99712 0.91772 0.86334 0.79289 0.81697 0.78546 1.17722 1.23501 1.20239 1.18955 0.83371 0.96288 1.47651 0.87875 1.43097 1.07765 1.40647 1.20039 1.17594 0.85273 0.87559 0.82593 1.90638 1.52471 1.43050 1.56823 1.21384 0.93990 0.94951 0.91889 1.22235 0.95067 0.98438 0.96947 1.18084 0.92814 0.96591 0.94689 1.21029 0.96512 0.99453 0.95151 1.20992 0.93239 0.98024 0.99653 1.20917 1.00048 0.98311 0.94497 1.21036 0.93956 0.98654 0.96915 1.18521 0.95348 1.01446 0.94643 1.21977 0.90212 0.95841 0.89561 1.98386 1.59265 1.76215 1.65970 1.67345 1.00728 1.15059 1.32623 1.22659 0.94895 0.98924 0.87250 1.23209 1.01251 0.94588 1.03257 1.23102 0.99541 0.98666 1.01374 0.91397 0.82547 0.84551 0.85395 0.85455 0.84710 0.83467 0.87545 0.89601 0.89603 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.45 13.95 55.50 0.77 -24.68 16 2 C 0.09 2.72 4.86 -17.45 -0.08 2.63 16 3 Si 0.91 24.55 24.79 -169.99 -4.21 20.34 16 4 H -0.25 -7.01 6.32 56.52 0.36 -6.65 16 5 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 6 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.34 -9.48 8.56 -15.02 -0.13 -9.61 16 8 H 0.10 3.00 7.19 -52.48 -0.38 2.62 16 9 N -0.40 -10.10 2.47 -108.82 -0.27 -10.37 16 10 C 0.48 12.07 5.94 -12.36 -0.07 11.99 16 11 O -0.55 -15.25 11.71 5.28 0.06 -15.19 16 12 C 0.10 2.14 6.65 -83.08 -0.55 1.59 16 13 C -0.11 -1.86 9.41 -38.61 -0.36 -2.22 16 14 C -0.02 -0.24 5.74 -106.83 -0.61 -0.86 16 15 C -0.10 -1.16 9.81 -39.52 -0.39 -1.54 16 16 C -0.10 -0.90 9.95 -39.89 -0.40 -1.30 16 17 C -0.12 -1.06 9.95 -39.88 -0.40 -1.46 16 18 C -0.09 -0.92 9.45 -39.55 -0.37 -1.30 16 19 C -0.10 -1.34 5.75 -106.74 -0.61 -1.96 16 20 C 0.20 3.16 7.35 -16.92 -0.12 3.04 16 21 Cl -0.03 -0.34 27.72 -51.86 -1.44 -1.77 16 22 N -0.44 -8.30 5.87 -6.65 -0.04 -8.34 16 23 C 0.07 1.43 5.07 -67.93 -0.34 1.08 16 24 C -0.19 -3.49 9.80 -26.69 -0.26 -3.75 16 25 C -0.19 -3.63 10.39 -26.69 -0.28 -3.91 16 26 H 0.28 7.77 8.31 -40.82 -0.34 7.43 16 27 H 0.16 2.69 7.62 -52.49 -0.40 2.29 16 28 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.14 1.20 7.03 -52.48 -0.37 0.83 16 32 H 0.15 2.92 5.32 -52.24 -0.28 2.64 16 33 H 0.11 2.20 6.60 -51.93 -0.34 1.86 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -32.60 316.39 -8.83 -41.43 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -3.48 Total: 1.37 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -4.99 Total: -7.56 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.47 Total: -43.38 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.06 Total: -15.19 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -4.21 Total: 20.34 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.44 Total: -1.77 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.60 -8.83 -41.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706768817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.890 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds