Wall clock time and date at job start Tue Mar 31 2020 11:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86794 * 120.00217 * 2 1 4 4 H 1.48494 * 109.47425 * 275.12446 * 3 2 1 5 5 H 1.48500 * 109.47136 * 35.12865 * 3 2 1 6 6 H 1.48498 * 109.46929 * 155.12661 * 3 2 1 7 7 C 1.39087 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00110 * 341.15428 * 7 2 1 9 9 N 1.36810 * 119.99733 * 161.14900 * 7 2 1 10 10 C 1.34772 * 120.00088 * 316.27248 * 9 7 2 11 11 O 1.21596 * 120.00327 * 2.35970 * 10 9 7 12 12 C 1.47777 * 119.99669 * 182.35941 * 10 9 7 13 13 C 1.38504 * 119.28467 * 173.08386 * 12 10 9 14 14 C 1.40545 * 118.53289 * 180.30788 * 13 12 10 15 15 C 1.40288 * 122.08460 * 179.10977 * 14 13 12 16 16 C 1.36278 * 119.47992 * 180.02562 * 15 14 13 17 17 C 1.39297 * 120.97106 * 359.97438 * 16 15 14 18 18 C 1.36312 * 121.08939 * 359.97438 * 17 16 15 19 19 C 1.40175 * 119.58205 * 0.30399 * 18 17 16 20 20 C 1.40879 * 121.86673 * 179.69876 * 19 18 17 21 21 Cl 1.73604 * 119.88858 * 0.04163 * 20 19 18 22 22 N 1.30981 * 120.22105 * 180.02562 * 20 19 18 23 23 C 1.46502 * 119.99271 * 136.26735 * 9 7 2 24 24 C 1.52995 * 117.50448 * 1.30689 * 23 9 7 25 25 C 1.52998 * 117.50088 * 292.64096 * 23 9 7 26 26 H 0.97010 * 120.00095 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.72802 * 359.44800 * 13 12 10 28 28 H 1.07995 * 120.25426 * 0.02562 * 15 14 13 29 29 H 1.07996 * 119.51300 * 179.97438 * 16 15 14 30 30 H 1.07997 * 119.45576 * 180.02562 * 17 16 15 31 31 H 1.08003 * 120.20884 * 180.02562 * 18 17 16 32 32 H 1.09004 * 115.54507 * 146.97746 * 23 9 7 33 33 H 1.09006 * 117.49639 * 359.97438 * 24 23 9 34 34 H 1.08995 * 117.50045 * 145.01746 * 24 23 9 35 35 H 1.09004 * 117.50080 * 214.98259 * 25 23 9 36 36 H 1.08993 * 117.50024 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6176 0.0000 4 1 2.3866 2.1089 -1.3944 5 1 1.5033 2.6189 0.8056 6 1 3.5949 1.4111 0.5889 7 6 2.0087 -1.2046 -0.0005 8 1 1.5121 -2.1150 0.3012 9 7 3.3218 -1.2362 -0.3834 10 6 3.7232 -0.5496 -1.4714 11 8 2.9273 0.1324 -2.0879 12 6 5.1307 -0.6256 -1.9152 13 6 5.4964 -0.0335 -3.1127 14 6 6.8379 -0.1210 -3.5227 15 6 7.2858 0.4355 -4.7301 16 6 8.5988 0.3189 -5.0760 17 6 9.5020 -0.3439 -4.2482 18 6 9.1011 -0.8953 -3.0678 19 6 7.7571 -0.8007 -2.6810 20 6 7.2893 -1.3583 -1.4747 21 17 8.3908 -2.1895 -0.4214 22 7 6.0261 -1.2513 -1.1452 23 6 4.2914 -2.0165 0.3895 24 6 3.7681 -2.7983 1.5961 25 6 4.6128 -1.5392 1.8072 26 1 -0.4851 0.8401 0.0004 27 1 4.7641 0.4721 -3.7246 28 1 6.5955 0.9521 -5.3804 29 1 8.9441 0.7466 -6.0056 30 1 10.5372 -0.4216 -4.5461 31 1 9.8136 -1.4057 -2.4366 32 1 5.1015 -2.4633 -0.1869 33 1 2.7023 -2.7318 1.8151 34 1 4.2341 -3.7592 1.8137 35 1 5.6342 -1.6725 2.1637 36 1 4.1032 -0.6446 2.1647 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706768817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:53 Heat of formation + Delta-G solvation = 56.569354 kcal Electronic energy + Delta-G solvation = -23883.922028 eV Core-core repulsion = 20360.383882 eV Total energy + Delta-G solvation = -3523.538146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.17504 -40.73248 -38.41520 -38.14915 -37.69081 -35.03900 -33.86896 -33.56083 -32.37730 -30.84969 -27.64991 -25.26946 -25.23799 -23.45410 -23.28317 -22.91127 -21.64687 -19.93564 -18.97885 -18.36828 -17.79759 -17.36527 -17.14560 -16.35542 -16.23928 -16.06304 -15.54121 -15.34329 -15.02737 -14.97655 -14.82849 -14.58115 -14.20591 -13.60156 -13.49849 -13.10535 -12.90430 -12.71155 -12.46195 -12.45556 -12.23142 -12.12476 -12.07231 -11.65651 -11.45681 -11.09729 -10.96843 -10.86968 -10.22781 -10.06674 -9.48892 -9.12916 -8.54134 -6.26112 -0.95838 -0.43496 0.53500 0.73369 1.09767 1.27598 1.37036 1.48805 2.20173 2.37353 2.42968 2.87673 2.93729 3.13859 3.25885 3.43480 3.58002 3.68063 3.90631 4.00579 4.21731 4.23929 4.30147 4.32456 4.43719 4.56805 4.61047 4.83085 4.84904 4.98243 5.04517 5.24493 5.36175 5.37680 5.42304 5.44708 5.62000 5.78579 5.82191 6.36145 6.65075 6.76681 7.20119 7.72710 8.54032 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.005546 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.041048 B = 5047.232527 C = 6330.367385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.054 3.946 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.342 4.342 8 H 0.080 0.920 9 N -0.421 5.421 10 C 0.484 3.516 11 O -0.584 6.584 12 C 0.062 3.938 13 C -0.093 4.093 14 C -0.036 4.036 15 C -0.112 4.112 16 C -0.082 4.082 17 C -0.094 4.094 18 C -0.096 4.096 19 C -0.097 4.097 20 C 0.202 3.798 21 Cl 0.001 6.999 22 N -0.466 5.466 23 C 0.050 3.950 24 C -0.174 4.174 25 C -0.178 4.178 26 H 0.277 0.723 27 H 0.149 0.851 28 H 0.152 0.848 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.635 -2.038 -7.722 26.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.152 4.152 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.469 4.469 8 H 0.097 0.903 9 N -0.137 5.137 10 C 0.275 3.725 11 O -0.471 6.471 12 C -0.062 4.062 13 C -0.115 4.115 14 C -0.041 4.041 15 C -0.130 4.130 16 C -0.101 4.101 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.100 4.100 20 C 0.021 3.979 21 Cl 0.030 6.970 22 N -0.179 5.179 23 C -0.053 4.053 24 C -0.211 4.211 25 C -0.217 4.217 26 H 0.087 0.913 27 H 0.167 0.833 28 H 0.170 0.830 29 H 0.187 0.813 30 H 0.189 0.811 31 H 0.173 0.827 32 H 0.181 0.819 33 H 0.098 0.902 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 24.658 -2.037 -7.131 25.749 hybrid contribution -0.537 1.031 -0.120 1.169 sum 24.121 -1.006 -7.250 25.207 Atomic orbital electron populations 1.69767 1.07707 1.29019 1.46591 1.25880 0.95416 1.01662 0.92258 0.85631 0.78468 0.80042 0.77294 1.19728 1.22390 1.20396 1.18760 0.85153 0.95181 1.47799 0.90256 1.43194 1.07393 1.41973 1.21183 1.18360 0.87200 0.85225 0.81726 1.90578 1.54533 1.44235 1.57728 1.20620 0.92282 0.99409 0.93925 1.22318 0.96801 0.96819 0.95536 1.18264 0.91368 0.97955 0.96480 1.21317 0.98256 0.99396 0.94029 1.21538 0.91897 0.95952 1.00708 1.21520 1.02069 0.94838 0.92693 1.21331 0.92508 0.99437 0.98301 1.18798 0.96868 1.00567 0.93803 1.22314 0.89550 0.95465 0.90542 1.98391 1.57770 1.75555 1.65274 1.67054 1.01903 1.16050 1.32909 1.22914 0.94934 0.99713 0.87781 1.23247 1.00079 0.96230 1.01551 1.23095 1.00971 0.97737 0.99853 0.91337 0.83282 0.83030 0.81295 0.81103 0.82662 0.81932 0.90195 0.85691 0.86259 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -57.04 13.95 21.69 0.30 -56.74 16 2 C 0.05 3.36 4.86 84.97 0.41 3.77 16 3 Si 0.96 53.53 24.79 68.60 1.70 55.23 16 4 H -0.27 -15.78 6.32 99.48 0.63 -15.15 16 5 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.28 -15.37 7.11 99.48 0.71 -14.67 16 7 C -0.34 -20.54 8.56 84.12 0.72 -19.82 16 8 H 0.08 4.99 7.19 -2.91 -0.02 4.97 16 9 N -0.42 -22.32 2.47 -616.46 -1.52 -23.84 16 10 C 0.48 25.53 5.94 86.77 0.52 26.04 16 11 O -0.58 -34.54 11.71 -4.02 -0.05 -34.59 16 12 C 0.06 2.61 6.65 41.46 0.28 2.89 16 13 C -0.09 -3.30 9.41 22.90 0.22 -3.09 16 14 C -0.04 -0.96 5.74 -21.29 -0.12 -1.08 16 15 C -0.11 -2.05 9.81 22.31 0.22 -1.83 16 16 C -0.08 -0.94 9.95 22.07 0.22 -0.72 16 17 C -0.09 -1.00 9.95 22.08 0.22 -0.78 16 18 C -0.10 -1.55 9.45 22.29 0.21 -1.34 16 19 C -0.10 -2.41 5.75 -21.24 -0.12 -2.54 16 20 C 0.20 5.84 7.35 85.47 0.63 6.47 16 21 Cl 0.00 0.03 27.72 -2.72 -0.08 -0.04 16 22 N -0.47 -17.18 5.87 -174.94 -1.03 -18.20 16 23 C 0.05 2.16 5.07 44.99 0.23 2.39 16 24 C -0.17 -6.56 9.80 30.62 0.30 -6.26 16 25 C -0.18 -6.85 10.39 30.62 0.32 -6.54 16 26 H 0.28 16.58 8.31 -92.70 -0.77 15.81 16 27 H 0.15 5.32 7.62 -2.91 -0.02 5.30 16 28 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 30 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 31 H 0.16 1.87 7.03 -2.91 -0.02 1.85 16 32 H 0.16 6.43 5.32 -3.00 -0.02 6.41 16 33 H 0.08 3.48 6.60 -2.38 -0.02 3.46 16 34 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 35 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 36 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -78.74 316.39 4.62 -74.12 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.05 Total: 6.51 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 4.24 Total: -2.44 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -2.24 Total: -98.79 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.05 Total: -34.59 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 1.70 Total: 55.23 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.08 Total: -0.04 kcal Total: -78.74 4.62 -74.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706768817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.686 kcal (2) G-P(sol) polarization free energy of solvation -78.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds