Wall clock time and date at job start Tue Mar 31 2020 10:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86802 * 119.99730 * 2 1 4 4 H 1.48502 * 109.47023 * 240.00354 * 3 2 1 5 5 H 1.48501 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47474 * 119.99932 * 3 2 1 7 7 C 1.38764 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00011 * 180.02562 * 7 2 1 9 9 O 1.34877 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.34804 * 117.00068 * 180.02562 * 9 7 2 11 11 O 1.21566 * 119.99947 * 0.02562 * 10 9 7 12 12 C 1.47197 * 120.00151 * 179.72727 * 10 9 7 13 13 C 1.47066 * 127.20200 * 0.02562 * 12 10 9 14 14 C 1.34152 * 105.95331 * 179.97438 * 13 12 10 15 15 O 1.34223 * 109.15755 * 0.02562 * 14 13 12 16 16 C 1.33643 * 110.92070 * 359.74359 * 15 14 13 17 17 C 1.50706 * 125.81519 * 180.26449 * 16 15 14 18 18 O 1.42901 * 109.46825 * 270.17969 * 17 16 15 19 19 C 1.35665 * 116.99529 * 179.97438 * 18 17 16 20 20 C 1.39078 * 119.88576 * 359.72519 * 19 18 17 21 21 C 1.37121 * 120.11534 * 179.72186 * 20 19 18 22 22 C 1.40042 * 119.88152 * 0.57265 * 21 20 19 23 23 C 1.46850 * 120.11695 * 179.67848 * 22 21 20 24 24 O 1.21297 * 120.00563 * 180.02562 * 23 22 21 25 25 C 1.40047 * 119.77237 * 359.69860 * 22 21 20 26 26 C 1.37120 * 119.88001 * 0.02562 * 25 22 21 27 27 H 0.96993 * 120.00267 * 0.02562 * 1 2 3 28 28 H 1.08001 * 127.01874 * 359.97438 * 13 12 10 29 29 H 1.07998 * 125.42469 * 180.02562 * 14 13 12 30 30 H 1.09001 * 109.46991 * 30.17341 * 17 16 15 31 31 H 1.09000 * 109.47172 * 150.17251 * 17 16 15 32 32 H 1.08000 * 119.94535 * 359.97438 * 20 19 18 33 33 H 1.07999 * 120.06293 * 180.27017 * 21 20 19 34 34 H 1.08006 * 119.99972 * 0.02562 * 23 22 21 35 35 H 1.07994 * 120.05884 * 179.97438 * 25 22 21 36 36 H 1.07997 * 119.93782 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1021 1.6965 -1.2126 5 1 1.2833 2.7465 -0.0006 6 1 3.1022 1.6966 1.2125 7 6 2.0084 -1.2017 0.0005 8 1 3.0884 -1.2016 0.0010 9 8 1.3340 -2.3698 0.0016 10 6 2.0683 -3.5003 0.0026 11 8 3.2823 -3.4366 0.0030 12 6 1.4001 -4.8119 0.0098 13 6 -0.0472 -5.0725 0.0160 14 6 -0.1816 -6.4072 0.0208 15 8 1.0358 -6.9725 0.0188 16 6 1.9943 -6.0412 0.0070 17 6 3.4784 -6.3032 -0.0043 18 8 3.9579 -6.3847 1.3394 19 6 5.2836 -6.6189 1.5070 20 6 6.1060 -6.7731 0.3961 21 6 7.4476 -7.0043 0.5600 22 6 7.9872 -7.0971 1.8489 23 6 9.4221 -7.3515 2.0305 24 8 9.8872 -7.4320 3.1478 25 6 7.1537 -6.9467 2.9643 26 6 5.8144 -6.7101 2.7893 27 1 -0.4850 0.8400 -0.0004 28 1 -0.8400 -4.3390 0.0165 29 1 -1.1199 -6.9419 0.0256 30 1 3.6774 -7.2434 -0.5187 31 1 3.9869 -5.4905 -0.5230 32 1 5.6879 -6.7066 -0.5975 33 1 8.0862 -7.1196 -0.3033 34 1 10.0632 -7.4671 1.1691 35 1 7.5649 -7.0177 3.9603 36 1 5.1708 -6.5944 3.6487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731732516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:28 Heat of formation + Delta-G solvation = -99.791199 kcal Electronic energy + Delta-G solvation = -24723.563333 eV Core-core repulsion = 20720.242969 eV Total energy + Delta-G solvation = -4003.320364 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.087 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.35416 -40.40497 -39.11102 -38.81606 -37.17577 -35.28248 -32.70356 -32.20150 -31.78697 -31.08742 -30.13188 -26.95029 -25.56525 -24.35162 -23.22125 -22.72658 -21.22244 -20.90231 -19.23195 -18.52048 -17.84890 -17.63051 -16.98029 -16.47861 -15.95012 -15.83483 -15.63709 -15.15186 -14.85922 -14.45090 -14.37924 -14.37665 -14.33068 -13.89742 -13.58668 -13.28900 -12.87226 -12.67874 -12.48659 -12.32314 -11.93033 -11.67554 -11.31636 -11.08813 -11.01125 -10.55564 -10.51650 -9.96237 -9.92492 -9.48990 -9.28941 -9.20258 -8.67041 -8.56188 -8.36732 -6.51762 -4.15297 0.56172 1.20818 1.35018 2.32038 2.35498 2.73367 3.13191 3.14425 3.18129 3.38157 3.66426 3.86516 4.01314 4.11532 4.46425 4.47124 4.59400 4.71387 4.83348 4.99248 5.08270 5.11673 5.16585 5.30904 5.38192 5.45198 5.65900 5.78871 5.82578 5.97081 6.05622 6.11674 6.20718 6.50229 6.53947 6.72792 7.19529 7.21181 7.27406 7.31268 7.84590 8.59909 8.96531 9.75213 10.65773 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.003463 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.679494 B = 8084.065799 C =10080.781698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.376 4.376 8 H 0.098 0.902 9 O -0.199 6.199 10 C 0.458 3.542 11 O -0.552 6.552 12 C -0.144 4.144 13 C -0.173 4.173 14 C -0.038 4.038 15 O -0.173 6.173 16 C 0.022 3.978 17 C 0.144 3.856 18 O -0.297 6.297 19 C 0.183 3.817 20 C -0.225 4.225 21 C -0.022 4.022 22 C -0.246 4.246 23 C 0.388 3.612 24 O -0.473 6.473 25 C -0.018 4.018 26 C -0.169 4.169 27 H 0.272 0.728 28 H 0.166 0.834 29 H 0.210 0.790 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.101 0.899 35 H 0.138 0.862 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 -15.388 -1.205 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.163 4.163 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.452 4.452 8 H 0.116 0.884 9 O -0.105 6.105 10 C 0.306 3.694 11 O -0.452 6.452 12 C -0.147 4.147 13 C -0.192 4.192 14 C -0.104 4.104 15 O -0.070 6.070 16 C -0.030 4.030 17 C 0.070 3.930 18 O -0.209 6.209 19 C 0.136 3.864 20 C -0.244 4.244 21 C -0.041 4.041 22 C -0.247 4.247 23 C 0.248 3.752 24 O -0.347 6.347 25 C -0.036 4.036 26 C -0.187 4.187 27 H 0.082 0.918 28 H 0.184 0.816 29 H 0.226 0.774 30 H 0.098 0.902 31 H 0.136 0.864 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.117 0.883 35 H 0.156 0.844 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.411 -15.496 -0.474 17.184 hybrid contribution -0.082 1.079 -0.361 1.141 sum 7.329 -14.417 -0.834 16.194 Atomic orbital electron populations 1.69980 1.06087 1.28095 1.45299 1.25387 0.95864 0.98985 0.96021 0.85699 0.78666 0.79098 0.79499 1.19339 1.20249 1.19316 1.21272 0.92555 0.79666 1.51721 0.88429 1.83925 1.38947 1.13086 1.74529 1.19620 0.85311 0.84467 0.79994 1.90616 1.14703 1.87647 1.52227 1.20696 0.93567 0.91953 1.08464 1.23125 0.95548 0.95926 1.04563 1.23899 0.86415 0.93278 1.06828 1.83678 1.14676 1.36789 1.71829 1.21578 0.89419 0.85861 1.06095 1.21118 0.85566 1.03659 0.82654 1.86101 1.20855 1.84697 1.29273 1.19393 0.82601 0.90067 0.94314 1.21164 0.94956 1.09742 0.98529 1.21020 0.94362 0.92464 0.96230 1.20766 0.97039 1.12739 0.94138 1.23863 0.88568 0.70471 0.92278 1.90520 1.77380 1.37304 1.29528 1.21071 0.91824 0.91655 0.99044 1.20341 0.95653 1.07516 0.95206 0.91802 0.81600 0.77352 0.90207 0.86355 0.84563 0.84748 0.88298 0.84433 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.64 13.67 55.48 0.76 -23.88 16 2 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 3 Si 0.95 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.38 -11.00 9.65 30.93 0.30 -10.71 16 8 H 0.10 2.85 6.86 -52.48 -0.36 2.49 16 9 O -0.20 -5.70 9.65 -21.90 -0.21 -5.91 16 10 C 0.46 11.62 7.89 34.37 0.27 11.89 16 11 O -0.55 -14.53 14.10 -19.32 -0.27 -14.81 16 12 C -0.14 -2.96 6.32 -103.29 -0.65 -3.61 16 13 C -0.17 -2.96 11.05 -37.44 -0.41 -3.37 16 14 C -0.04 -0.51 12.03 29.29 0.35 -0.16 16 15 O -0.17 -2.61 10.52 7.66 0.08 -2.53 16 16 C 0.02 0.38 7.01 -34.92 -0.24 0.13 16 17 C 0.14 2.17 4.73 36.01 0.17 2.34 16 18 O -0.30 -4.83 10.11 -18.70 -0.19 -5.02 16 19 C 0.18 2.57 6.70 -38.96 -0.26 2.31 16 20 C -0.23 -2.60 8.99 -39.68 -0.36 -2.96 16 21 C -0.02 -0.21 9.77 -39.31 -0.38 -0.60 16 22 C -0.25 -2.60 5.87 -105.06 -0.62 -3.22 16 23 C 0.39 3.66 11.44 34.21 0.39 4.06 16 24 O -0.47 -6.25 17.16 5.54 0.10 -6.16 16 25 C -0.02 -0.21 9.57 -39.31 -0.38 -0.58 16 26 C -0.17 -2.19 9.95 -39.68 -0.39 -2.58 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.17 2.79 8.06 -52.49 -0.42 2.37 16 29 H 0.21 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.08 0.89 7.64 -51.93 -0.40 0.50 16 31 H 0.12 1.92 6.02 -51.93 -0.31 1.61 16 32 H 0.14 1.35 6.27 -52.49 -0.33 1.02 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.10 0.53 8.06 -52.48 -0.42 0.11 16 35 H 0.14 1.50 7.64 -52.49 -0.40 1.10 16 36 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -35.62 335.55 -5.07 -40.69 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -3.05 Total: 2.63 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.31 Total: -5.98 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.76 Total: -23.88 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.50 Total: -34.42 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.62 -5.07 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731732516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.102 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds