Wall clock time and date at job start Tue Mar 31 2020 10:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86802 * 119.99730 * 2 1 4 4 H 1.48502 * 109.47023 * 240.00354 * 3 2 1 5 5 H 1.48501 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47474 * 119.99932 * 3 2 1 7 7 C 1.38764 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00011 * 180.02562 * 7 2 1 9 9 O 1.34877 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.34804 * 117.00068 * 180.02562 * 9 7 2 11 11 O 1.21566 * 119.99947 * 0.02562 * 10 9 7 12 12 C 1.47197 * 120.00151 * 179.72727 * 10 9 7 13 13 C 1.47066 * 127.20200 * 0.02562 * 12 10 9 14 14 C 1.34152 * 105.95331 * 179.97438 * 13 12 10 15 15 O 1.34223 * 109.15755 * 0.02562 * 14 13 12 16 16 C 1.33643 * 110.92070 * 359.74359 * 15 14 13 17 17 C 1.50706 * 125.81519 * 180.26449 * 16 15 14 18 18 O 1.42901 * 109.46825 * 270.17969 * 17 16 15 19 19 C 1.35665 * 116.99529 * 179.97438 * 18 17 16 20 20 C 1.39078 * 119.88576 * 359.72519 * 19 18 17 21 21 C 1.37121 * 120.11534 * 179.72186 * 20 19 18 22 22 C 1.40042 * 119.88152 * 0.57265 * 21 20 19 23 23 C 1.46850 * 120.11695 * 179.67848 * 22 21 20 24 24 O 1.21297 * 120.00563 * 180.02562 * 23 22 21 25 25 C 1.40047 * 119.77237 * 359.69860 * 22 21 20 26 26 C 1.37120 * 119.88001 * 0.02562 * 25 22 21 27 27 H 0.96993 * 120.00267 * 0.02562 * 1 2 3 28 28 H 1.08001 * 127.01874 * 359.97438 * 13 12 10 29 29 H 1.07998 * 125.42469 * 180.02562 * 14 13 12 30 30 H 1.09001 * 109.46991 * 30.17341 * 17 16 15 31 31 H 1.09000 * 109.47172 * 150.17251 * 17 16 15 32 32 H 1.08000 * 119.94535 * 359.97438 * 20 19 18 33 33 H 1.07999 * 120.06293 * 180.27017 * 21 20 19 34 34 H 1.08006 * 119.99972 * 0.02562 * 23 22 21 35 35 H 1.07994 * 120.05884 * 179.97438 * 25 22 21 36 36 H 1.07997 * 119.93782 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1021 1.6965 -1.2126 5 1 1.2833 2.7465 -0.0006 6 1 3.1022 1.6966 1.2125 7 6 2.0084 -1.2017 0.0005 8 1 3.0884 -1.2016 0.0010 9 8 1.3340 -2.3698 0.0016 10 6 2.0683 -3.5003 0.0026 11 8 3.2823 -3.4366 0.0030 12 6 1.4001 -4.8119 0.0098 13 6 -0.0472 -5.0725 0.0160 14 6 -0.1816 -6.4072 0.0208 15 8 1.0358 -6.9725 0.0188 16 6 1.9943 -6.0412 0.0070 17 6 3.4784 -6.3032 -0.0043 18 8 3.9579 -6.3847 1.3394 19 6 5.2836 -6.6189 1.5070 20 6 6.1060 -6.7731 0.3961 21 6 7.4476 -7.0043 0.5600 22 6 7.9872 -7.0971 1.8489 23 6 9.4221 -7.3515 2.0305 24 8 9.8872 -7.4320 3.1478 25 6 7.1537 -6.9467 2.9643 26 6 5.8144 -6.7101 2.7893 27 1 -0.4850 0.8400 -0.0004 28 1 -0.8400 -4.3390 0.0165 29 1 -1.1199 -6.9419 0.0256 30 1 3.6774 -7.2434 -0.5187 31 1 3.9869 -5.4905 -0.5230 32 1 5.6879 -6.7066 -0.5975 33 1 8.0862 -7.1196 -0.3033 34 1 10.0632 -7.4671 1.1691 35 1 7.5649 -7.0177 3.9603 36 1 5.1708 -6.5944 3.6487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731732516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:28 Heat of formation + Delta-G solvation = -123.144241 kcal Electronic energy + Delta-G solvation = -24724.575997 eV Core-core repulsion = 20720.242969 eV Total energy + Delta-G solvation = -4004.333028 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.087 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.68614 -41.38072 -40.85861 -40.02249 -38.15626 -37.32176 -34.42880 -34.01038 -32.85843 -32.08217 -31.15160 -28.44209 -27.37409 -25.31810 -24.74236 -23.74680 -22.59501 -21.87902 -20.72849 -19.93030 -19.54675 -19.19131 -17.90411 -17.78396 -17.32916 -17.02346 -16.99844 -16.38320 -16.36868 -16.26133 -15.96403 -15.56087 -15.25593 -15.06803 -14.57871 -14.44424 -14.16526 -13.93304 -13.84486 -13.63802 -13.43335 -13.25086 -13.11767 -12.45540 -12.19177 -12.14444 -12.07435 -11.94669 -11.19812 -10.96426 -10.76530 -10.74152 -10.16625 -9.87354 -9.34878 -8.60238 -6.37960 -0.31264 -0.09706 0.32794 1.01329 1.31280 1.40236 1.46168 1.49541 1.51882 2.01951 2.08268 2.37676 2.69775 2.79025 2.96796 3.34141 3.42788 3.67680 3.73890 3.83612 3.89992 4.06559 4.19975 4.30268 4.34646 4.46657 4.51419 4.59870 4.80372 4.88676 4.96228 5.09733 5.11693 5.21937 5.27763 5.33243 5.61515 5.75618 5.87579 6.18676 6.52912 6.54612 6.83917 7.67449 8.60388 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.003463 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.679494 B = 8084.065799 C =10080.781698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.002 4.002 3 Si 1.019 2.981 4 H -0.258 1.258 5 H -0.258 1.258 6 H -0.263 1.263 7 C -0.421 4.421 8 H 0.085 0.915 9 O -0.231 6.231 10 C 0.459 3.541 11 O -0.570 6.570 12 C -0.199 4.199 13 C -0.206 4.206 14 C 0.007 3.993 15 O -0.159 6.159 16 C 0.043 3.957 17 C 0.143 3.857 18 O -0.324 6.324 19 C 0.152 3.848 20 C -0.231 4.231 21 C -0.009 4.009 22 C -0.250 4.250 23 C 0.398 3.602 24 O -0.515 6.515 25 C -0.030 4.030 26 C -0.185 4.185 27 H 0.281 0.719 28 H 0.160 0.840 29 H 0.271 0.729 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.153 0.847 33 H 0.182 0.818 34 H 0.157 0.843 35 H 0.139 0.861 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -17.028 -2.513 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.203 4.203 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.181 1.181 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.103 0.897 9 O -0.139 6.139 10 C 0.309 3.691 11 O -0.470 6.470 12 C -0.202 4.202 13 C -0.225 4.225 14 C -0.058 4.058 15 O -0.054 6.054 16 C -0.009 4.009 17 C 0.069 3.931 18 O -0.237 6.237 19 C 0.106 3.894 20 C -0.249 4.249 21 C -0.026 4.026 22 C -0.251 4.251 23 C 0.261 3.739 24 O -0.391 6.391 25 C -0.048 4.048 26 C -0.204 4.204 27 H 0.090 0.910 28 H 0.177 0.823 29 H 0.286 0.714 30 H 0.142 0.858 31 H 0.119 0.881 32 H 0.170 0.830 33 H 0.199 0.801 34 H 0.173 0.827 35 H 0.156 0.844 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.512 -17.171 -1.789 19.248 hybrid contribution -0.385 1.349 0.053 1.404 sum 8.127 -15.822 -1.736 17.871 Atomic orbital electron populations 1.70064 1.07707 1.29689 1.46025 1.26597 0.96936 1.02340 0.94446 0.84668 0.77652 0.74038 0.79900 1.18236 1.18139 1.18726 1.21483 0.92387 0.80892 1.54857 0.89732 1.83945 1.39804 1.13879 1.76224 1.20505 0.85450 0.85458 0.77688 1.90569 1.15633 1.88255 1.52496 1.20661 0.95863 0.90601 1.13038 1.23158 0.93808 0.97919 1.07599 1.24879 0.87186 0.91908 1.01875 1.83755 1.15018 1.35892 1.70757 1.21883 0.90781 0.85063 1.03150 1.21190 0.83927 1.05218 0.82800 1.86024 1.22441 1.85690 1.29559 1.19689 0.82139 0.92054 0.95499 1.21467 0.95750 1.09272 0.98413 1.21482 0.93908 0.90035 0.97207 1.21171 0.98023 1.11693 0.94218 1.24560 0.88085 0.68307 0.92981 1.90526 1.77760 1.39232 1.31615 1.21217 0.91585 0.91958 1.00020 1.20428 0.96331 1.08510 0.95135 0.90962 0.82281 0.71361 0.85768 0.88141 0.82966 0.80105 0.82670 0.84357 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.20 13.67 21.63 0.30 -52.91 16 2 C 0.00 -0.13 5.49 84.88 0.47 0.33 16 3 Si 1.02 43.45 29.55 68.60 2.03 45.47 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.42 -25.98 9.65 67.95 0.66 -25.32 16 8 H 0.08 5.25 6.86 -2.91 -0.02 5.23 16 9 O -0.23 -14.12 9.65 10.37 0.10 -14.02 16 10 C 0.46 24.72 7.89 70.18 0.55 25.28 16 11 O -0.57 -31.68 14.10 19.62 0.28 -31.41 16 12 C -0.20 -8.42 6.32 -19.00 -0.12 -8.54 16 13 C -0.21 -7.06 11.05 23.66 0.26 -6.80 16 14 C 0.01 0.16 12.03 66.89 0.80 0.97 16 15 O -0.16 -4.35 10.52 4.48 0.05 -4.30 16 16 C 0.04 1.48 7.01 25.29 0.18 1.66 16 17 C 0.14 4.22 4.73 71.24 0.34 4.56 16 18 O -0.32 -10.70 10.11 -89.82 -0.91 -11.60 16 19 C 0.15 4.29 6.70 22.67 0.15 4.45 16 20 C -0.23 -4.93 8.99 22.21 0.20 -4.73 16 21 C -0.01 -0.13 9.77 22.44 0.22 0.08 16 22 C -0.25 -4.77 5.87 -20.15 -0.12 -4.89 16 23 C 0.40 6.32 11.44 70.08 0.80 7.12 16 24 O -0.51 -12.87 17.16 -3.08 -0.05 -12.92 16 25 C -0.03 -0.70 9.57 22.45 0.21 -0.48 16 26 C -0.19 -4.99 9.95 22.21 0.22 -4.77 16 27 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.16 5.58 8.06 -2.91 -0.02 5.56 16 29 H 0.27 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.12 2.48 7.64 -2.39 -0.02 2.46 16 31 H 0.10 3.32 6.02 -2.39 -0.01 3.31 16 32 H 0.15 2.67 6.27 -2.91 -0.02 2.65 16 33 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.14 3.12 7.64 -2.91 -0.02 3.10 16 36 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -85.04 335.55 7.75 -77.29 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.14 Total: 15.49 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 4.83 Total: -11.09 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.30 Total: -52.91 kcal Atomic # 8 Polarization: -73.72 SS G_CDS: -0.54 Total: -74.25 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -85.04 7.75 -77.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731732516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.855 kcal (2) G-P(sol) polarization free energy of solvation -85.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds