Wall clock time and date at job start Tue Mar 31 2020 10:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38289 * 119.93951 * 2 1 4 4 C 1.38139 * 120.07948 * 180.27706 * 3 2 1 5 5 C 1.38723 * 119.95543 * 359.42216 * 4 3 2 6 6 O 1.35932 * 120.05766 * 180.29524 * 5 4 3 7 7 C 1.34709 * 117.00180 * 266.04662 * 6 5 4 8 8 O 1.21474 * 120.00293 * 6.40010 * 7 6 5 9 9 C 1.47757 * 119.99970 * 186.40518 * 7 6 5 10 10 C 1.39973 * 120.03056 * 359.72817 * 9 7 6 11 11 C 1.38310 * 120.35278 * 179.69707 * 10 9 7 12 12 C 1.37764 * 120.42055 * 0.60060 * 11 10 9 13 13 C 1.40753 * 120.04665 * 359.67717 * 12 11 10 14 14 C 1.41450 * 120.17526 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99682 * 26.03432 * 14 13 12 16 16 C 1.39934 * 120.00039 * 206.03649 * 14 13 12 17 17 N 1.30832 * 119.99961 * 15.40910 * 16 14 13 18 18 Si 1.86793 * 119.99967 * 195.40590 * 16 14 13 19 19 H 1.48508 * 109.47041 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47514 * 120.00158 * 18 16 14 21 21 H 1.48500 * 109.47132 * 240.00201 * 18 16 14 22 22 C 1.39058 * 120.03200 * 179.97438 * 9 7 6 23 23 C 1.38825 * 119.87764 * 0.55801 * 5 4 3 24 24 Cl 1.73601 * 120.03658 * 179.72447 * 23 5 4 25 25 C 1.38242 * 119.94175 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.47469 * 90.00341 * 1 2 3 27 27 H 1.09006 * 109.47196 * 209.99950 * 1 2 3 28 28 H 1.08999 * 109.47530 * 330.00166 * 1 2 3 29 29 H 1.08003 * 119.95357 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.01700 * 179.70201 * 4 3 2 31 31 H 1.08000 * 119.82313 * 359.96975 * 10 9 7 32 32 H 1.08000 * 119.79569 * 180.29652 * 11 10 9 33 33 H 1.07998 * 119.98001 * 179.70121 * 12 11 10 34 34 H 0.96999 * 120.00037 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.20352 * 359.97438 * 22 9 7 36 36 H 1.08001 * 119.97748 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5785 1.2017 -0.0058 5 6 4.2741 0.0015 0.0005 6 8 5.6334 0.0025 0.0009 7 6 6.2455 -0.0859 -1.1959 8 8 5.5901 -0.0446 -2.2178 9 6 7.7140 -0.2333 -1.2655 10 6 8.4705 -0.2753 -0.0886 11 6 9.8448 -0.4193 -0.1459 12 6 10.4866 -0.5106 -1.3615 13 6 9.7435 -0.4645 -2.5559 14 6 10.3995 -0.5586 -3.8055 15 1 11.3493 -1.0672 -3.8798 16 6 9.8179 0.0075 -4.9455 17 7 8.8420 0.8701 -4.8223 18 14 10.4350 -0.4684 -6.6431 19 1 11.5380 -1.4540 -6.5106 20 1 9.3239 -1.0702 -7.4231 21 1 10.9344 0.7410 -7.3453 22 6 8.3464 -0.3251 -2.5006 23 6 3.5795 -1.2004 0.0009 24 17 4.4459 -2.7048 0.0016 25 6 2.1969 -1.1979 0.0005 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6553 2.1327 -0.0004 30 1 4.1165 2.1382 -0.0106 31 1 7.9778 -0.1993 0.8695 32 1 10.4192 -0.4555 0.7680 33 1 11.5606 -0.6181 -1.3980 34 1 8.4391 1.2627 -5.6124 35 1 7.7673 -0.2896 -3.4115 36 1 1.6556 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740796432.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:43 Heat of formation + Delta-G solvation = -59.820133 kcal Electronic energy + Delta-G solvation = -22739.335379 eV Core-core repulsion = 19178.457455 eV Total energy + Delta-G solvation = -3560.877924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.065 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.37103 -40.23872 -39.19031 -37.83965 -37.66774 -35.64270 -33.31134 -32.15662 -31.98132 -31.40255 -28.03252 -27.22387 -25.28581 -24.13991 -22.98402 -22.69231 -21.61853 -19.83664 -19.09587 -17.96716 -17.92384 -17.16259 -16.85242 -16.53598 -15.98667 -15.90885 -15.26944 -15.17136 -15.00599 -14.84463 -14.44402 -14.27630 -13.70094 -13.65192 -13.43044 -13.14187 -13.00106 -12.83562 -12.70499 -12.59266 -12.39349 -12.24524 -12.23911 -12.09707 -11.82760 -11.58408 -11.44197 -11.13783 -10.04518 -9.67300 -9.65591 -9.47033 -8.69253 -6.43204 -0.25710 0.02606 0.03469 0.91478 0.92774 1.37030 1.42274 1.53208 1.64976 1.73443 2.18156 2.49127 2.69607 3.50381 3.58669 3.72213 3.78002 4.10838 4.12689 4.26594 4.40226 4.54606 4.57098 4.77268 4.82616 4.85755 4.91819 5.01165 5.02981 5.08032 5.15985 5.24689 5.30394 5.37076 5.40056 5.68314 5.78156 5.85429 5.97734 6.18836 6.49660 6.76066 6.83886 6.85131 8.28293 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.003606 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.555084 B = 7762.249117 C = 8356.902008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.066 4.066 3 C -0.098 4.098 4 C -0.115 4.115 5 C 0.050 3.950 6 O -0.286 6.286 7 C 0.517 3.483 8 O -0.528 6.528 9 C -0.127 4.127 10 C -0.180 4.180 11 C -0.098 4.098 12 C -0.199 4.199 13 C 0.066 3.934 14 C -0.491 4.491 15 H 0.089 0.911 16 C 0.029 3.971 17 N -0.829 5.829 18 Si 0.985 3.015 19 H -0.250 1.250 20 H -0.271 1.271 21 H -0.264 1.264 22 C -0.117 4.117 23 C -0.056 4.056 24 Cl -0.067 7.067 25 C -0.106 4.106 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.173 0.827 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.143 0.857 33 H 0.119 0.881 34 H 0.287 0.713 35 H 0.106 0.894 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.532 -0.610 9.304 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.066 4.066 3 C -0.116 4.116 4 C -0.133 4.133 5 C 0.008 3.992 6 O -0.202 6.202 7 C 0.366 3.634 8 O -0.417 6.417 9 C -0.128 4.128 10 C -0.200 4.200 11 C -0.115 4.115 12 C -0.219 4.219 13 C 0.064 3.936 14 C -0.521 4.521 15 H 0.107 0.893 16 C -0.186 4.186 17 N -0.455 5.455 18 Si 0.805 3.195 19 H -0.173 1.173 20 H -0.196 1.196 21 H -0.189 1.189 22 C -0.136 4.136 23 C -0.083 4.083 24 Cl -0.038 7.038 25 C -0.124 4.124 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.190 0.810 30 H 0.161 0.839 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.809 -0.557 8.869 17.271 hybrid contribution 0.543 -0.211 -0.952 1.116 sum -14.267 -0.768 7.917 16.334 Atomic orbital electron populations 1.20913 0.86876 1.04973 1.03925 1.20441 0.98766 0.91301 0.96089 1.21448 0.91882 1.00089 0.98137 1.21527 0.96085 0.96379 0.99304 1.18779 0.81220 0.93549 1.05690 1.84712 1.18451 1.84077 1.32912 1.22123 0.89586 0.71227 0.80439 1.90755 1.67398 1.47367 1.36182 1.18997 0.86998 1.10641 0.96199 1.20944 0.94437 1.08786 0.95797 1.20959 0.93733 0.99135 0.97714 1.21550 0.99169 1.08856 0.92278 1.17906 0.90997 0.90350 0.94324 1.19893 1.06900 1.32833 0.92445 0.89317 1.26867 0.93882 0.92192 1.05640 1.69866 1.21302 1.20652 1.33681 0.85111 0.79227 0.79422 0.75715 1.17347 1.19610 1.18851 1.21463 0.95212 1.02083 0.94878 1.21520 0.94215 0.86115 1.06422 1.98379 1.77350 1.31267 1.96804 1.21202 0.89708 1.00976 1.00552 0.89672 0.89742 0.88985 0.80962 0.83875 0.85325 0.83951 0.86337 0.90195 0.87600 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.23 0.71 -0.39 16 2 C -0.07 -1.23 5.88 -19.85 -0.12 -1.35 16 3 C -0.10 -1.98 9.69 22.26 0.22 -1.77 16 4 C -0.11 -3.25 9.99 22.36 0.22 -3.03 16 5 C 0.05 1.75 4.93 22.53 0.11 1.86 16 6 O -0.29 -11.71 8.75 0.01 0.00 -11.71 16 7 C 0.52 24.73 7.66 70.34 0.54 25.27 16 8 O -0.53 -27.82 16.12 19.92 0.32 -27.50 16 9 C -0.13 -6.37 5.87 -20.14 -0.12 -6.48 16 10 C -0.18 -7.84 9.62 22.71 0.22 -7.62 16 11 C -0.10 -4.00 10.01 22.17 0.22 -3.78 16 12 C -0.20 -9.23 9.78 22.77 0.22 -9.01 16 13 C 0.07 3.58 5.56 -21.32 -0.12 3.46 16 14 C -0.49 -26.25 9.06 23.47 0.21 -26.04 16 15 H 0.09 4.44 7.89 -2.91 -0.02 4.42 16 16 C 0.03 1.48 5.18 85.25 0.44 1.92 16 17 N -0.83 -45.51 10.92 21.82 0.24 -45.27 16 18 Si 0.98 38.97 29.59 68.60 2.03 41.00 16 19 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 20 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 C -0.12 -6.50 8.22 23.02 0.19 -6.31 16 23 C -0.06 -1.77 6.33 22.42 0.14 -1.63 16 24 Cl -0.07 -2.23 28.35 -2.72 -0.08 -2.31 16 25 C -0.11 -2.49 9.48 22.28 0.21 -2.28 16 26 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 0.65 8.08 -2.38 -0.02 0.63 16 28 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 29 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 30 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 31 H 0.13 4.91 7.59 -2.91 -0.02 4.89 16 32 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 34 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 35 H 0.11 6.48 5.77 -2.91 -0.02 6.46 16 36 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -68.05 336.45 6.93 -61.11 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 1.11 Total: 21.85 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 3.31 Total: -37.17 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.24 Total: -45.27 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: 0.32 Total: -39.21 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.08 Total: -2.31 kcal Total: -68.05 6.93 -61.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740796432.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.291 kcal (2) G-P(sol) polarization free energy of solvation -68.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds