Wall clock time and date at job start Tue Mar 31 2020 10:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48503 * 109.47290 * 239.99756 * 3 2 1 5 5 H 1.48501 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47144 * 119.99752 * 3 2 1 7 7 C 1.38807 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99883 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00023 * 0.02562 * 7 2 1 10 10 C 1.76203 * 100.00090 * 185.58744 * 9 7 2 11 11 C 1.39115 * 120.18773 * 9.20951 * 10 9 7 12 12 C 1.37913 * 120.04636 * 180.30113 * 11 10 9 13 13 C 1.38653 * 120.44244 * 359.67399 * 12 11 10 14 14 C 1.37804 * 120.38410 * 0.02562 * 13 12 11 15 15 C 1.39690 * 119.93891 * 0.02562 * 14 13 12 16 16 C 1.47392 * 120.21973 * 180.02562 * 15 14 13 17 17 O 1.21636 * 120.00340 * 179.97438 * 16 15 14 18 18 N 1.34777 * 120.00243 * 0.02562 * 16 15 14 19 19 C 1.40047 * 120.00445 * 186.12511 * 18 16 15 20 20 C 1.38980 * 120.50356 * 16.74354 * 19 18 16 21 21 C 1.38738 * 118.41636 * 179.72033 * 20 19 18 22 22 C 1.38079 * 119.35300 * 0.59600 * 21 20 19 23 23 N 1.32001 * 120.97241 * 359.66201 * 22 21 20 24 24 C 1.32143 * 121.72415 * 0.02562 * 23 22 21 25 25 O 1.35743 * 119.72698 * 179.97438 * 24 23 22 26 26 H 0.97004 * 120.00067 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.97776 * 359.97438 * 11 10 9 28 28 H 1.08006 * 119.77753 * 179.69809 * 12 11 10 29 29 H 1.08002 * 119.80820 * 180.02562 * 13 12 11 30 30 H 1.08002 * 120.03311 * 179.97438 * 14 13 12 31 31 H 0.97005 * 119.99969 * 6.39092 * 18 16 15 32 32 H 1.07998 * 120.79257 * 359.97438 * 20 19 18 33 33 H 1.08003 * 120.32192 * 180.28197 * 21 20 19 34 34 H 1.08001 * 119.51231 * 179.67862 * 22 21 20 35 35 H 0.96697 * 114.00099 * 270.01320 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6964 1.2126 7 6 2.0095 -1.2021 0.0005 8 1 3.0895 -1.2021 0.0010 9 16 1.1285 -2.7281 0.0005 10 6 2.4711 -3.8565 0.1703 11 6 3.7499 -3.3853 0.4493 12 6 4.7998 -4.2707 0.5754 13 6 4.5903 -5.6338 0.4325 14 6 3.3298 -6.1207 0.1621 15 6 2.2551 -5.2382 0.0301 16 6 0.9042 -5.7522 -0.2586 17 8 -0.0289 -4.9802 -0.3723 18 7 0.7026 -7.0777 -0.3956 19 6 -0.5508 -7.5578 -0.7956 20 6 -1.4785 -6.7051 -1.3818 21 6 -2.7046 -7.2279 -1.7670 22 6 -2.9694 -8.5651 -1.5472 23 7 -2.0718 -9.3516 -0.9832 24 6 -0.8893 -8.8980 -0.6064 25 8 0.0032 -9.7427 -0.0297 26 1 -0.4850 0.8401 -0.0004 27 1 3.9217 -2.3251 0.5621 28 1 5.7918 -3.8998 0.7873 29 1 5.4198 -6.3180 0.5337 30 1 3.1731 -7.1835 0.0515 31 1 1.4245 -7.6996 -0.2133 32 1 -1.2490 -5.6614 -1.5377 33 1 -3.4466 -6.5939 -2.2296 34 1 -3.9250 -8.9735 -1.8412 35 1 -0.0672 -9.7916 0.9335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751399037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:41 Heat of formation + Delta-G solvation = 1.916312 kcal Electronic energy + Delta-G solvation = -22737.849881 eV Core-core repulsion = 19213.985508 eV Total energy + Delta-G solvation = -3523.864373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97426 -39.41121 -37.69355 -37.08097 -34.86513 -32.86977 -31.96093 -30.84128 -30.42371 -29.06135 -25.93913 -24.45813 -23.47558 -22.63158 -21.99058 -20.29800 -19.06286 -18.52394 -17.68514 -16.95993 -16.44206 -16.17433 -15.72779 -15.23438 -15.03038 -14.73528 -14.51926 -14.11103 -13.94389 -13.32557 -13.21143 -13.02140 -12.94167 -12.47602 -12.19535 -11.82696 -11.70575 -11.31823 -11.25993 -11.06967 -10.97846 -10.45471 -10.16812 -9.89557 -9.62111 -9.50383 -9.30754 -8.85774 -8.52993 -8.23886 -8.04231 -6.68369 -6.57410 -4.28947 0.89695 1.22471 1.46351 1.88930 3.01564 3.05915 3.07623 3.12132 3.18934 3.30017 3.46739 3.86939 3.96259 4.32497 4.71491 4.79661 4.84314 4.97860 5.08081 5.14745 5.22282 5.38589 5.48460 5.49169 5.79197 5.96982 5.99095 6.21914 6.25423 6.33600 6.45330 6.70217 6.72793 6.88006 7.00304 7.32472 7.37523 7.45331 7.51906 7.88392 8.04620 8.38490 8.88916 10.45773 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.004017 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.505973 B = 6968.569626 C = 8614.117252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.085 3.915 3 Si 0.920 3.080 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.597 4.597 8 H 0.092 0.908 9 S 0.190 5.810 10 C -0.056 4.056 11 C -0.150 4.150 12 C -0.073 4.073 13 C -0.184 4.184 14 C -0.059 4.059 15 C -0.183 4.183 16 C 0.552 3.448 17 O -0.489 6.489 18 N -0.664 5.664 19 C 0.110 3.890 20 C -0.094 4.094 21 C -0.152 4.152 22 C 0.083 3.917 23 N -0.482 5.482 24 C 0.262 3.738 25 O -0.481 6.481 26 H 0.277 0.723 27 H 0.140 0.860 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.413 0.587 32 H 0.178 0.822 33 H 0.141 0.859 34 H 0.158 0.842 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 -13.328 -0.129 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.127 4.127 3 Si 0.745 3.255 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.743 4.743 8 H 0.109 0.891 9 S 0.456 5.544 10 C -0.176 4.176 11 C -0.175 4.175 12 C -0.095 4.095 13 C -0.208 4.208 14 C -0.079 4.079 15 C -0.199 4.199 16 C 0.344 3.656 17 O -0.366 6.366 18 N -0.309 5.309 19 C 0.010 3.990 20 C -0.121 4.121 21 C -0.173 4.173 22 C -0.075 4.075 23 N -0.200 5.200 24 C 0.080 3.920 25 O -0.287 6.287 26 H 0.087 0.913 27 H 0.158 0.842 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.251 0.749 32 H 0.195 0.805 33 H 0.159 0.841 34 H 0.175 0.825 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.030 -13.414 -0.738 13.473 hybrid contribution 2.463 1.662 0.631 3.038 sum 1.434 -11.752 -0.107 11.839 Atomic orbital electron populations 1.69950 1.06264 1.28760 1.43842 1.25108 0.95001 0.99719 0.92849 0.86177 0.79497 0.80433 0.79369 1.19390 1.20465 1.19411 1.23999 0.97014 0.93847 1.59443 0.89076 1.84616 1.02361 0.93131 1.74291 1.23080 1.00981 0.96796 0.96727 1.21441 0.91738 1.00943 1.03390 1.21134 0.98204 0.93364 0.96820 1.20657 0.96453 0.95398 1.08298 1.20915 0.92671 0.97482 0.96831 1.18872 0.91875 0.92915 1.16200 1.18525 0.89446 0.80704 0.76961 1.90673 1.42492 1.55179 1.48226 1.43422 1.11403 1.08499 1.67556 1.18950 0.88327 0.92498 0.99237 1.22404 0.92291 1.03080 0.94366 1.22175 0.97833 0.96568 1.00680 1.22376 0.97567 0.90319 0.97249 1.67072 1.01305 1.39414 1.12235 1.18694 0.88116 0.85468 0.99742 1.84789 1.53021 1.65102 1.25812 0.91308 0.84245 0.86779 0.86794 0.87031 0.74945 0.80506 0.84100 0.82474 0.74845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.68 13.22 55.49 0.73 -22.95 16 2 C 0.08 2.23 5.49 -17.46 -0.10 2.13 16 3 Si 0.92 19.90 29.55 -169.99 -5.02 14.88 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.60 -15.71 8.97 30.94 0.28 -15.43 16 8 H 0.09 2.27 5.06 -52.49 -0.27 2.00 16 9 S 0.19 4.80 18.56 -107.50 -2.00 2.81 16 10 C -0.06 -1.19 6.14 -38.39 -0.24 -1.43 16 11 C -0.15 -2.95 9.19 -39.37 -0.36 -3.31 16 12 C -0.07 -1.16 10.02 -39.55 -0.40 -1.56 16 13 C -0.18 -2.64 10.02 -39.59 -0.40 -3.03 16 14 C -0.06 -0.87 9.53 -39.20 -0.37 -1.25 16 15 C -0.18 -3.38 5.89 -104.76 -0.62 -3.99 16 16 C 0.55 9.97 7.61 -12.53 -0.10 9.87 16 17 O -0.49 -10.27 10.62 5.25 0.06 -10.22 16 18 N -0.66 -9.53 5.29 -10.62 -0.06 -9.58 16 19 C 0.11 1.61 6.57 -83.35 -0.55 1.07 16 20 C -0.09 -1.41 8.93 -39.12 -0.35 -1.76 16 21 C -0.15 -1.85 10.10 -39.46 -0.40 -2.25 16 22 C 0.08 0.97 11.17 -17.54 -0.20 0.77 16 23 N -0.48 -6.65 10.38 -13.17 -0.14 -6.79 16 24 C 0.26 3.57 7.77 -16.94 -0.13 3.44 16 25 O -0.48 -5.39 12.91 -18.94 -0.24 -5.64 16 26 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.14 2.86 5.12 -52.49 -0.27 2.59 16 28 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.11 1.24 6.42 -52.49 -0.34 0.91 16 31 H 0.41 4.80 6.28 -40.82 -0.26 4.55 16 32 H 0.18 3.06 5.36 -52.49 -0.28 2.77 16 33 H 0.14 1.35 8.06 -52.48 -0.42 0.92 16 34 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.40 2.68 9.06 45.56 0.41 3.09 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -31.51 317.10 -7.63 -39.14 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -1.82 Total: 10.29 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -3.92 Total: -16.72 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.54 Total: -39.32 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.19 Total: -15.85 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -2.00 Total: 2.81 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.51 -7.63 -39.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751399037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.059 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds