Wall clock time and date at job start Tue Mar 31 2020 10:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48503 * 109.47290 * 239.99756 * 3 2 1 5 5 H 1.48501 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47144 * 119.99752 * 3 2 1 7 7 C 1.38807 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99883 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00023 * 0.02562 * 7 2 1 10 10 C 1.76203 * 100.00090 * 185.58744 * 9 7 2 11 11 C 1.39115 * 120.18773 * 9.20951 * 10 9 7 12 12 C 1.37913 * 120.04636 * 180.30113 * 11 10 9 13 13 C 1.38653 * 120.44244 * 359.67399 * 12 11 10 14 14 C 1.37804 * 120.38410 * 0.02562 * 13 12 11 15 15 C 1.39690 * 119.93891 * 0.02562 * 14 13 12 16 16 C 1.47392 * 120.21973 * 180.02562 * 15 14 13 17 17 O 1.21636 * 120.00340 * 179.97438 * 16 15 14 18 18 N 1.34777 * 120.00243 * 0.02562 * 16 15 14 19 19 C 1.40047 * 120.00445 * 186.12511 * 18 16 15 20 20 C 1.38980 * 120.50356 * 16.74354 * 19 18 16 21 21 C 1.38738 * 118.41636 * 179.72033 * 20 19 18 22 22 C 1.38079 * 119.35300 * 0.59600 * 21 20 19 23 23 N 1.32001 * 120.97241 * 359.66201 * 22 21 20 24 24 C 1.32143 * 121.72415 * 0.02562 * 23 22 21 25 25 O 1.35743 * 119.72698 * 179.97438 * 24 23 22 26 26 H 0.97004 * 120.00067 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.97776 * 359.97438 * 11 10 9 28 28 H 1.08006 * 119.77753 * 179.69809 * 12 11 10 29 29 H 1.08002 * 119.80820 * 180.02562 * 13 12 11 30 30 H 1.08002 * 120.03311 * 179.97438 * 14 13 12 31 31 H 0.97005 * 119.99969 * 6.39092 * 18 16 15 32 32 H 1.07998 * 120.79257 * 359.97438 * 20 19 18 33 33 H 1.08003 * 120.32192 * 180.28197 * 21 20 19 34 34 H 1.08001 * 119.51231 * 179.67862 * 22 21 20 35 35 H 0.96697 * 114.00099 * 270.01320 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6964 1.2126 7 6 2.0095 -1.2021 0.0005 8 1 3.0895 -1.2021 0.0010 9 16 1.1285 -2.7281 0.0005 10 6 2.4711 -3.8565 0.1703 11 6 3.7499 -3.3853 0.4493 12 6 4.7998 -4.2707 0.5754 13 6 4.5903 -5.6338 0.4325 14 6 3.3298 -6.1207 0.1621 15 6 2.2551 -5.2382 0.0301 16 6 0.9042 -5.7522 -0.2586 17 8 -0.0289 -4.9802 -0.3723 18 7 0.7026 -7.0777 -0.3956 19 6 -0.5508 -7.5578 -0.7956 20 6 -1.4785 -6.7051 -1.3818 21 6 -2.7046 -7.2279 -1.7670 22 6 -2.9694 -8.5651 -1.5472 23 7 -2.0718 -9.3516 -0.9832 24 6 -0.8893 -8.8980 -0.6064 25 8 0.0032 -9.7427 -0.0297 26 1 -0.4850 0.8401 -0.0004 27 1 3.9217 -2.3251 0.5621 28 1 5.7918 -3.8998 0.7873 29 1 5.4198 -6.3180 0.5337 30 1 3.1731 -7.1835 0.0515 31 1 1.4245 -7.6996 -0.2133 32 1 -1.2490 -5.6614 -1.5377 33 1 -3.4466 -6.5939 -2.2296 34 1 -3.9250 -8.9735 -1.8412 35 1 -0.0672 -9.7916 0.9335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751399037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:40 Heat of formation + Delta-G solvation = -22.648280 kcal Electronic energy + Delta-G solvation = -22738.915082 eV Core-core repulsion = 19213.985508 eV Total energy + Delta-G solvation = -3524.929574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.14170 -40.67210 -39.07662 -38.01654 -36.15157 -34.78249 -33.14585 -32.08218 -31.83189 -30.19071 -27.85386 -25.70666 -24.58960 -23.86107 -23.32795 -21.67712 -20.29007 -19.78284 -19.17387 -18.24019 -17.71403 -17.20064 -17.16291 -16.86253 -16.27196 -16.13956 -15.67302 -15.51404 -15.39187 -14.82247 -14.57035 -14.23625 -14.16569 -13.65414 -13.44014 -13.32490 -12.98244 -12.91420 -12.73351 -12.57452 -12.21821 -12.09177 -11.60282 -11.46929 -11.35678 -10.59435 -10.53259 -10.42634 -9.90872 -9.89006 -9.17161 -8.49498 -8.47120 -6.26133 -0.26467 0.08519 0.26194 0.50213 1.26273 1.37671 1.43507 1.60111 1.83617 1.85425 2.20573 2.51014 2.81126 2.87347 2.99729 3.20613 3.60793 3.74206 3.90703 4.03089 4.15666 4.23658 4.32410 4.53939 4.57900 4.60055 4.79967 4.91113 5.07036 5.20510 5.24168 5.33260 5.42872 5.51852 5.64405 5.66579 6.06363 6.12820 6.33757 6.55242 6.88997 6.94558 7.05874 8.57899 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.004017 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.505973 B = 6968.569626 C = 8614.117252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.028 3.972 3 Si 0.990 3.010 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.604 4.604 8 H 0.095 0.905 9 S 0.076 5.924 10 C -0.069 4.069 11 C -0.173 4.173 12 C -0.065 4.065 13 C -0.156 4.156 14 C -0.053 4.053 15 C -0.184 4.184 16 C 0.548 3.452 17 O -0.523 6.523 18 N -0.644 5.644 19 C 0.088 3.912 20 C -0.115 4.115 21 C -0.151 4.151 22 C 0.094 3.906 23 N -0.498 5.498 24 C 0.273 3.727 25 O -0.481 6.481 26 H 0.276 0.724 27 H 0.121 0.879 28 H 0.151 0.849 29 H 0.167 0.833 30 H 0.159 0.841 31 H 0.427 0.573 32 H 0.147 0.853 33 H 0.164 0.836 34 H 0.196 0.804 35 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -16.751 0.068 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.750 4.750 8 H 0.112 0.888 9 S 0.335 5.665 10 C -0.188 4.188 11 C -0.198 4.198 12 C -0.086 4.086 13 C -0.179 4.179 14 C -0.073 4.073 15 C -0.198 4.198 16 C 0.339 3.661 17 O -0.402 6.402 18 N -0.290 5.290 19 C -0.012 4.012 20 C -0.143 4.143 21 C -0.171 4.171 22 C -0.063 4.063 23 N -0.217 5.217 24 C 0.090 3.910 25 O -0.290 6.290 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.169 0.831 29 H 0.184 0.816 30 H 0.176 0.824 31 H 0.267 0.733 32 H 0.165 0.835 33 H 0.182 0.818 34 H 0.213 0.787 35 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 1.481 -16.960 -0.519 17.033 hybrid contribution 1.851 2.246 0.574 2.966 sum 3.331 -14.714 0.055 15.086 Atomic orbital electron populations 1.70100 1.07944 1.29324 1.46337 1.26098 0.95827 1.03309 0.92608 0.85119 0.78160 0.75889 0.79670 1.18706 1.19930 1.18458 1.24199 0.97094 0.94334 1.59410 0.88775 1.84761 1.06183 0.95307 1.80232 1.22993 1.00032 0.97126 0.98622 1.21458 0.92308 1.01035 1.05008 1.21584 0.98551 0.93774 0.94669 1.21328 0.97522 0.95286 1.03744 1.21450 0.91633 0.99238 0.94975 1.19240 0.93395 0.92324 1.14828 1.18656 0.89104 0.81720 0.76576 1.90702 1.43503 1.56484 1.49477 1.43085 1.12034 1.07222 1.66671 1.19032 0.88347 0.93178 1.00618 1.22308 0.94094 1.02070 0.95826 1.22425 0.97097 0.97376 1.00164 1.22999 0.98397 0.89758 0.95173 1.67222 1.01613 1.39852 1.13000 1.18694 0.88231 0.84971 0.99089 1.84734 1.52378 1.64223 1.27642 0.91439 0.86166 0.83116 0.81586 0.82365 0.73256 0.83521 0.81816 0.78692 0.72396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.65 13.22 21.65 0.29 -53.36 16 2 C 0.03 1.54 5.49 84.87 0.47 2.01 16 3 Si 0.99 42.69 29.55 68.60 2.03 44.71 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.60 -34.09 8.97 67.96 0.61 -33.48 16 8 H 0.09 5.00 5.06 -2.91 -0.01 4.99 16 9 S 0.08 4.15 18.56 -56.49 -1.05 3.10 16 10 C -0.07 -3.09 6.14 23.04 0.14 -2.94 16 11 C -0.17 -6.81 9.19 22.40 0.21 -6.61 16 12 C -0.06 -1.82 10.02 22.29 0.22 -1.60 16 13 C -0.16 -3.56 10.02 22.27 0.22 -3.34 16 14 C -0.05 -1.35 9.53 22.52 0.21 -1.13 16 15 C -0.18 -6.69 5.89 -19.95 -0.12 -6.81 16 16 C 0.55 20.21 7.61 86.65 0.66 20.87 16 17 O -0.52 -23.68 10.62 -4.14 -0.04 -23.72 16 18 N -0.64 -17.78 5.29 -305.76 -1.62 -19.40 16 19 C 0.09 2.52 6.57 38.31 0.25 2.77 16 20 C -0.11 -3.55 8.93 22.57 0.20 -3.35 16 21 C -0.15 -3.53 10.10 22.35 0.23 -3.31 16 22 C 0.09 1.97 11.17 84.63 0.95 2.92 16 23 N -0.50 -12.55 10.38 -308.46 -3.20 -15.75 16 24 C 0.27 6.86 7.77 84.95 0.66 7.52 16 25 O -0.48 -9.29 12.91 -90.68 -1.17 -10.46 16 26 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.12 5.14 5.12 -2.91 -0.01 5.13 16 28 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.16 2.55 6.42 -2.91 -0.02 2.53 16 31 H 0.43 8.64 6.28 -92.70 -0.58 8.06 16 32 H 0.15 5.54 5.36 -2.92 -0.02 5.52 16 33 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 34 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.42 4.26 9.06 -74.06 -0.67 3.59 16 Total: -1.00 -77.13 317.10 0.08 -77.05 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.06 Total: 24.30 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.91 Total: -26.49 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -4.53 Total: -88.51 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.21 Total: -34.18 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.05 Total: 3.10 kcal Total: -77.13 0.08 -77.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751399037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.398 kcal (2) G-P(sol) polarization free energy of solvation -77.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds