Wall clock time and date at job start Tue Mar 31 2020 10:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86802 * 119.99881 * 2 1 4 4 H 1.48497 * 109.47067 * 269.99877 * 3 2 1 5 5 H 1.48501 * 109.47443 * 30.00096 * 3 2 1 6 6 H 1.48502 * 109.47129 * 149.99762 * 3 2 1 7 7 C 1.40239 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00704 * 197.87093 * 7 2 1 9 9 C 1.41091 * 119.99730 * 17.87055 * 7 2 1 10 10 C 1.40898 * 120.09932 * 204.64231 * 9 7 2 11 11 C 1.36304 * 119.90039 * 180.02562 * 10 9 7 12 12 C 1.40070 * 120.09867 * 0.02562 * 11 10 9 13 13 C 1.47506 * 119.89695 * 179.97438 * 12 11 10 14 14 O 1.21509 * 120.00357 * 359.97438 * 13 12 11 15 15 O 1.34781 * 119.99633 * 180.02562 * 13 12 11 16 16 C 1.45203 * 116.99774 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46816 * 179.97438 * 16 15 13 18 18 C 1.38243 * 119.98104 * 269.71893 * 17 16 15 19 19 C 1.38213 * 120.00728 * 179.72951 * 18 17 16 20 20 C 1.38356 * 119.98715 * 0.54517 * 19 18 17 21 21 Cl 1.73599 * 120.01230 * 179.70409 * 20 19 18 22 22 C 1.38352 * 119.97350 * 359.73216 * 20 19 18 23 23 C 1.38215 * 119.98539 * 359.97438 * 22 20 19 24 24 C 1.40069 * 120.19887 * 0.25155 * 12 11 10 25 25 C 1.36302 * 120.09731 * 359.48632 * 24 12 11 26 26 H 0.97000 * 119.99853 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.05421 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.94956 * 179.97438 * 11 10 9 29 29 H 1.08997 * 109.47590 * 59.99257 * 16 15 13 30 30 H 1.09001 * 109.46540 * 299.99038 * 16 15 13 31 31 H 1.07993 * 119.99343 * 0.02562 * 18 17 16 32 32 H 1.08000 * 120.00895 * 180.27802 * 19 18 17 33 33 H 1.07997 * 120.00454 * 179.97438 * 22 20 19 34 34 H 1.08000 * 119.98665 * 179.97438 * 23 22 20 35 35 H 1.07995 * 119.94520 * 179.74701 * 24 12 11 36 36 H 1.08006 * 120.04406 * 180.25790 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5379 1.4402 0.7001 7 6 2.0076 -1.2145 0.0005 8 1 3.0485 -1.2370 0.2875 9 6 1.3532 -2.4070 -0.3739 10 6 1.8267 -3.6494 0.0926 11 6 1.1917 -4.7990 -0.2721 12 6 0.0703 -4.7467 -1.1097 13 6 -0.6131 -5.9936 -1.5021 14 8 -0.2029 -7.0640 -1.0991 15 8 -1.6920 -5.9456 -2.3084 16 6 -2.3143 -7.2115 -2.6528 17 6 -3.4963 -6.9615 -3.5538 18 6 -4.7510 -6.7636 -3.0083 19 6 -5.8344 -6.5287 -3.8338 20 6 -5.6649 -6.5029 -5.2067 21 17 -7.0265 -6.2156 -6.2445 22 6 -4.4099 -6.7068 -5.7522 23 6 -3.3262 -6.9356 -4.9254 24 6 -0.4005 -3.5144 -1.5806 25 6 0.2251 -2.3594 -1.2167 26 1 -0.4850 0.8401 -0.0004 27 1 2.6916 -3.6907 0.7382 28 1 1.5543 -5.7517 0.0847 29 1 -2.6499 -7.7107 -1.7438 30 1 -1.5912 -7.8434 -3.1685 31 1 -4.8838 -6.7877 -1.9368 32 1 -6.8138 -6.3695 -3.4075 33 1 -4.2771 -6.6872 -6.8238 34 1 -2.3466 -7.0952 -5.3511 35 1 -1.2630 -3.4791 -2.2295 36 1 -0.1412 -1.4093 -1.5769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758696332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:24 Heat of formation + Delta-G solvation = -61.770967 kcal Electronic energy + Delta-G solvation = -21851.475294 eV Core-core repulsion = 18290.512776 eV Total energy + Delta-G solvation = -3560.962518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.065 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.95394 -39.20673 -37.48282 -36.74090 -35.63973 -33.98014 -32.03527 -31.31127 -30.32664 -29.53698 -26.90827 -25.69597 -23.08385 -22.51734 -21.46522 -20.97890 -19.98446 -17.59363 -17.43845 -16.94497 -16.31432 -16.21457 -15.53347 -15.16991 -15.08107 -14.11659 -13.86058 -13.76655 -13.75693 -13.41029 -13.04181 -12.74476 -12.60679 -12.15689 -11.96586 -11.80182 -11.73442 -11.45091 -11.37817 -11.30727 -11.05430 -11.01464 -10.73520 -10.23701 -10.15617 -9.66012 -9.52353 -9.41243 -9.26416 -8.85641 -7.78794 -7.67389 -7.12628 -4.70884 0.80242 1.07291 1.87798 2.01706 2.84795 2.91162 2.93993 3.00188 3.11404 3.59547 3.68249 3.75259 4.43044 4.51998 4.61890 4.66501 5.00501 5.08261 5.36549 5.39428 5.48899 5.50084 5.72604 5.93976 5.97509 5.97874 6.17961 6.23078 6.32041 6.53666 6.71419 6.76950 6.95467 6.98233 7.07255 7.38338 7.63751 7.75067 7.80585 7.97515 8.32358 8.53381 8.66218 8.69261 9.78562 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.002609 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.868149 B =10728.817881 C =12128.548029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.131 3.869 10 C -0.239 4.239 11 C -0.018 4.018 12 C -0.275 4.275 13 C 0.515 3.485 14 O -0.553 6.553 15 O -0.354 6.354 16 C 0.106 3.894 17 C -0.082 4.082 18 C -0.083 4.083 19 C -0.113 4.113 20 C -0.030 4.030 21 Cl -0.074 7.074 22 C -0.114 4.114 23 C -0.083 4.083 24 C -0.042 4.042 25 C -0.185 4.185 26 H 0.289 0.711 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.101 0.899 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.639 -7.228 -8.469 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.128 3.872 10 C -0.259 4.259 11 C -0.036 4.036 12 C -0.278 4.278 13 C 0.367 3.633 14 O -0.447 6.447 15 O -0.272 6.272 16 C 0.032 3.968 17 C -0.082 4.082 18 C -0.101 4.101 19 C -0.132 4.132 20 C -0.056 4.056 21 Cl -0.045 7.045 22 C -0.132 4.132 23 C -0.101 4.101 24 C -0.061 4.061 25 C -0.204 4.204 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.119 0.881 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.888 -7.362 -8.441 14.941 hybrid contribution 0.072 0.648 -0.041 0.653 sum -9.816 -6.714 -8.481 14.607 Atomic orbital electron populations 1.69739 1.08002 1.30394 1.30368 1.26164 0.94859 1.02104 0.91878 0.86161 0.80554 0.79552 0.79780 1.18794 1.19896 1.18179 1.19943 0.98496 0.91157 1.36462 0.89427 1.17854 0.90300 0.92198 0.86866 1.20686 1.04705 0.92445 1.08034 1.20351 0.92499 0.97406 0.93370 1.18198 1.04511 0.89194 1.15883 1.21613 0.76904 0.90260 0.74486 1.90700 1.66079 1.32128 1.55775 1.86681 1.43351 1.33730 1.63458 1.21597 0.92046 0.85359 0.97787 1.19745 0.94147 1.00478 0.93870 1.21099 0.91445 0.97204 1.00365 1.21047 1.00052 1.00872 0.91232 1.20989 0.88957 1.04242 0.91459 1.98370 1.44304 1.94591 1.67257 1.21041 0.90731 1.00739 1.00728 1.21088 0.98833 0.97656 0.92567 1.20643 0.97085 0.91924 0.96429 1.21013 1.00067 0.97080 1.02241 0.89951 0.88045 0.87935 0.90626 0.90628 0.84662 0.84690 0.84707 0.84686 0.88067 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.93 10.96 55.56 0.61 -17.32 16 2 C 0.07 1.65 5.13 -17.31 -0.09 1.56 16 3 Si 0.92 16.80 29.60 -169.99 -5.03 11.76 16 4 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 7 C -0.43 -10.49 9.04 -37.75 -0.34 -10.84 16 8 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.13 3.28 5.57 -106.80 -0.60 2.69 16 10 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 11 C -0.02 -0.41 9.52 -39.59 -0.38 -0.78 16 12 C -0.28 -6.38 5.89 -104.75 -0.62 -6.99 16 13 C 0.51 11.12 7.89 34.51 0.27 11.39 16 14 O -0.55 -12.59 16.11 -19.27 -0.31 -12.90 16 15 O -0.35 -6.63 9.43 -40.71 -0.38 -7.01 16 16 C 0.11 1.54 5.60 36.01 0.20 1.74 16 17 C -0.08 -1.02 5.52 -104.62 -0.58 -1.60 16 18 C -0.08 -0.93 9.70 -39.59 -0.38 -1.31 16 19 C -0.11 -1.17 9.83 -39.55 -0.39 -1.56 16 20 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 21 Cl -0.07 -0.72 28.96 -51.86 -1.50 -2.22 16 22 C -0.11 -1.16 9.83 -39.55 -0.39 -1.55 16 23 C -0.08 -0.92 9.70 -39.59 -0.38 -1.31 16 24 C -0.04 -0.97 9.55 -39.59 -0.38 -1.35 16 25 C -0.18 -4.55 8.63 -39.27 -0.34 -4.88 16 26 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 27 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 28 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 29 H 0.08 1.04 8.08 -51.93 -0.42 0.63 16 30 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.10 2.16 7.59 -52.49 -0.40 1.77 16 36 H 0.12 3.02 6.16 -52.48 -0.32 2.70 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -27.15 337.87 -10.17 -37.31 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -3.62 Total: 6.67 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -5.02 Total: -21.39 kcal Atomic # 7 Polarization: -17.93 SS G_CDS: 0.61 Total: -17.32 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.69 Total: -19.91 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.76 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.15 -10.17 -37.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758696332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.456 kcal (2) G-P(sol) polarization free energy of solvation -27.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds