Wall clock time and date at job start Tue Mar 31 2020 10:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86802 * 119.99881 * 2 1 4 4 H 1.48497 * 109.47067 * 269.99877 * 3 2 1 5 5 H 1.48501 * 109.47443 * 30.00096 * 3 2 1 6 6 H 1.48502 * 109.47129 * 149.99762 * 3 2 1 7 7 C 1.40239 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00704 * 197.87093 * 7 2 1 9 9 C 1.41091 * 119.99730 * 17.87055 * 7 2 1 10 10 C 1.40898 * 120.09932 * 204.64231 * 9 7 2 11 11 C 1.36304 * 119.90039 * 180.02562 * 10 9 7 12 12 C 1.40070 * 120.09867 * 0.02562 * 11 10 9 13 13 C 1.47506 * 119.89695 * 179.97438 * 12 11 10 14 14 O 1.21509 * 120.00357 * 359.97438 * 13 12 11 15 15 O 1.34781 * 119.99633 * 180.02562 * 13 12 11 16 16 C 1.45203 * 116.99774 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46816 * 179.97438 * 16 15 13 18 18 C 1.38243 * 119.98104 * 269.71893 * 17 16 15 19 19 C 1.38213 * 120.00728 * 179.72951 * 18 17 16 20 20 C 1.38356 * 119.98715 * 0.54517 * 19 18 17 21 21 Cl 1.73599 * 120.01230 * 179.70409 * 20 19 18 22 22 C 1.38352 * 119.97350 * 359.73216 * 20 19 18 23 23 C 1.38215 * 119.98539 * 359.97438 * 22 20 19 24 24 C 1.40069 * 120.19887 * 0.25155 * 12 11 10 25 25 C 1.36302 * 120.09731 * 359.48632 * 24 12 11 26 26 H 0.97000 * 119.99853 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.05421 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.94956 * 179.97438 * 11 10 9 29 29 H 1.08997 * 109.47590 * 59.99257 * 16 15 13 30 30 H 1.09001 * 109.46540 * 299.99038 * 16 15 13 31 31 H 1.07993 * 119.99343 * 0.02562 * 18 17 16 32 32 H 1.08000 * 120.00895 * 180.27802 * 19 18 17 33 33 H 1.07997 * 120.00454 * 179.97438 * 22 20 19 34 34 H 1.08000 * 119.98665 * 179.97438 * 23 22 20 35 35 H 1.07995 * 119.94520 * 179.74701 * 24 12 11 36 36 H 1.08006 * 120.04406 * 180.25790 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5379 1.4402 0.7001 7 6 2.0076 -1.2145 0.0005 8 1 3.0485 -1.2370 0.2875 9 6 1.3532 -2.4070 -0.3739 10 6 1.8267 -3.6494 0.0926 11 6 1.1917 -4.7990 -0.2721 12 6 0.0703 -4.7467 -1.1097 13 6 -0.6131 -5.9936 -1.5021 14 8 -0.2029 -7.0640 -1.0991 15 8 -1.6920 -5.9456 -2.3084 16 6 -2.3143 -7.2115 -2.6528 17 6 -3.4963 -6.9615 -3.5538 18 6 -4.7510 -6.7636 -3.0083 19 6 -5.8344 -6.5287 -3.8338 20 6 -5.6649 -6.5029 -5.2067 21 17 -7.0265 -6.2156 -6.2445 22 6 -4.4099 -6.7068 -5.7522 23 6 -3.3262 -6.9356 -4.9254 24 6 -0.4005 -3.5144 -1.5806 25 6 0.2251 -2.3594 -1.2167 26 1 -0.4850 0.8401 -0.0004 27 1 2.6916 -3.6907 0.7382 28 1 1.5543 -5.7517 0.0847 29 1 -2.6499 -7.7107 -1.7438 30 1 -1.5912 -7.8434 -3.1685 31 1 -4.8838 -6.7877 -1.9368 32 1 -6.8138 -6.3695 -3.4075 33 1 -4.2771 -6.6872 -6.8238 34 1 -2.3466 -7.0952 -5.3511 35 1 -1.2630 -3.4791 -2.2295 36 1 -0.1412 -1.4093 -1.5769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758696332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:23 Heat of formation + Delta-G solvation = -71.485892 kcal Electronic energy + Delta-G solvation = -21851.896565 eV Core-core repulsion = 18290.512776 eV Total energy + Delta-G solvation = -3561.383789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.065 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35775 -40.30606 -39.22372 -37.64312 -37.12653 -35.74545 -33.08721 -32.13090 -32.06361 -31.37098 -28.36829 -27.11419 -24.15427 -23.90939 -22.84093 -22.43704 -21.66380 -19.39954 -18.61109 -18.37473 -17.72115 -17.43181 -17.10515 -16.26225 -16.25006 -15.76519 -15.28343 -15.06108 -14.58230 -14.56122 -14.53960 -14.12589 -14.07402 -13.88835 -13.55366 -13.24553 -12.89232 -12.69012 -12.66272 -12.56724 -12.41140 -12.29892 -11.84751 -11.80718 -11.62973 -11.42499 -11.25775 -11.13602 -10.08311 -9.75338 -9.62968 -9.52825 -8.84665 -6.54969 -0.09767 0.24284 0.25500 1.07024 1.13945 1.37175 1.42080 1.54793 1.89115 1.89474 2.15289 2.68112 2.69217 3.58586 3.62443 3.67404 3.88080 4.05833 4.13875 4.30220 4.36089 4.41265 4.48492 4.49214 4.62690 4.92652 4.93095 4.98707 5.08801 5.12442 5.15756 5.22742 5.41411 5.43842 5.56176 5.70343 5.81994 5.91453 5.96833 6.15500 6.49634 6.70663 6.82420 7.02120 8.09985 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.002609 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.868149 B =10728.817881 C =12128.548029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.459 4.459 8 H 0.093 0.907 9 C 0.105 3.895 10 C -0.250 4.250 11 C -0.023 4.023 12 C -0.290 4.290 13 C 0.521 3.479 14 O -0.568 6.568 15 O -0.357 6.357 16 C 0.104 3.896 17 C -0.100 4.100 18 C -0.089 4.089 19 C -0.115 4.115 20 C -0.035 4.035 21 Cl -0.066 7.066 22 C -0.115 4.115 23 C -0.087 4.087 24 C -0.038 4.038 25 C -0.203 4.203 26 H 0.299 0.701 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.115 0.885 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.175 -6.719 -9.161 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.177 1.177 7 C -0.485 4.485 8 H 0.111 0.889 9 C 0.101 3.899 10 C -0.269 4.269 11 C -0.041 4.041 12 C -0.293 4.293 13 C 0.374 3.626 14 O -0.463 6.463 15 O -0.275 6.275 16 C 0.030 3.970 17 C -0.101 4.101 18 C -0.107 4.107 19 C -0.134 4.134 20 C -0.062 4.062 21 Cl -0.037 7.037 22 C -0.133 4.133 23 C -0.106 4.106 24 C -0.057 4.057 25 C -0.222 4.222 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.133 0.867 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.447 -6.873 -9.143 15.492 hybrid contribution 0.106 0.416 0.115 0.445 sum -10.341 -6.457 -9.028 15.170 Atomic orbital electron populations 1.69765 1.09447 1.31983 1.30143 1.27033 0.95542 1.05145 0.90757 0.85052 0.79161 0.74879 0.79886 1.18360 1.18945 1.17718 1.20250 0.98975 0.91971 1.37295 0.88877 1.18197 0.90928 0.93210 0.87537 1.20871 1.05320 0.92305 1.08423 1.20522 0.92572 0.97707 0.93322 1.18446 1.04829 0.90055 1.15942 1.21296 0.77388 0.89359 0.74578 1.90681 1.66747 1.32437 1.56459 1.86640 1.42201 1.36281 1.62364 1.21872 0.92770 0.83690 0.98631 1.19687 0.93707 1.02515 0.94147 1.21264 0.91318 0.96985 1.01113 1.21261 1.00628 1.00279 0.91212 1.21180 0.89413 1.03788 0.91815 1.98375 1.43855 1.94493 1.66980 1.21267 0.90329 1.00023 1.01703 1.21266 0.99765 0.97329 0.92203 1.20752 0.97170 0.91601 0.96203 1.21011 1.00849 0.97188 1.03198 0.88923 0.86795 0.86918 0.90125 0.89945 0.83764 0.82882 0.82780 0.83588 0.86730 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.23 10.96 21.87 0.24 -36.99 16 2 C 0.04 1.60 5.13 85.36 0.44 2.04 16 3 Si 0.99 33.58 29.60 68.60 2.03 35.61 16 4 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 5 H -0.27 -8.54 7.11 99.48 0.71 -7.83 16 6 H -0.25 -8.36 7.11 99.48 0.71 -7.65 16 7 C -0.46 -22.35 9.04 23.46 0.21 -22.14 16 8 H 0.09 4.28 7.91 -2.91 -0.02 4.25 16 9 C 0.10 5.33 5.57 -21.28 -0.12 5.21 16 10 C -0.25 -11.94 9.73 22.47 0.22 -11.72 16 11 C -0.02 -1.05 9.52 22.26 0.21 -0.84 16 12 C -0.29 -13.51 5.89 -19.95 -0.12 -13.63 16 13 C 0.52 22.38 7.89 70.27 0.55 22.94 16 14 O -0.57 -25.63 16.11 19.80 0.32 -25.31 16 15 O -0.36 -13.18 9.43 -56.92 -0.54 -13.71 16 16 C 0.10 2.92 5.60 71.24 0.40 3.32 16 17 C -0.10 -2.38 5.52 -19.86 -0.11 -2.49 16 18 C -0.09 -1.87 9.70 22.27 0.22 -1.66 16 19 C -0.12 -2.18 9.83 22.29 0.22 -1.96 16 20 C -0.04 -0.68 6.32 22.32 0.14 -0.54 16 21 Cl -0.07 -1.16 28.96 -2.72 -0.08 -1.24 16 22 C -0.11 -2.13 9.83 22.29 0.22 -1.92 16 23 C -0.09 -1.82 9.70 22.26 0.22 -1.60 16 24 C -0.04 -1.80 9.55 22.26 0.21 -1.59 16 25 C -0.20 -10.19 8.63 22.47 0.19 -10.00 16 26 H 0.30 12.50 8.29 -92.71 -0.77 11.73 16 27 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 28 H 0.11 4.92 7.63 -2.91 -0.02 4.89 16 29 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 30 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 31 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.11 4.91 7.59 -2.91 -0.02 4.88 16 36 H 0.11 5.75 6.16 -2.91 -0.02 5.73 16 Total: -1.00 -57.32 337.87 6.19 -51.13 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 1.11 Total: 27.08 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 3.11 Total: -36.58 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.24 Total: -36.99 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.22 Total: -39.02 kcal Atomic # 14 Polarization: 33.58 SS G_CDS: 2.03 Total: 35.61 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -57.32 6.19 -51.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758696332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.357 kcal (2) G-P(sol) polarization free energy of solvation -57.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds