Wall clock time and date at job start Tue Mar 31 2020 10:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.97661 * 2 1 4 4 C 1.38244 * 120.12270 * 179.97438 * 3 2 1 5 5 C 1.38184 * 120.07884 * 0.24197 * 4 3 2 6 6 C 1.38679 * 119.95231 * 359.48466 * 5 4 3 7 7 O 1.35930 * 120.06182 * 180.28145 * 6 5 4 8 8 C 1.34726 * 116.99710 * 266.16590 * 7 6 5 9 9 O 1.21470 * 119.99796 * 5.43322 * 8 7 6 10 10 C 1.47759 * 119.99635 * 185.43900 * 8 7 6 11 11 C 1.39966 * 120.03285 * 359.71567 * 10 8 7 12 12 C 1.38311 * 120.35122 * 179.76785 * 11 10 8 13 13 C 1.37759 * 120.41908 * 0.51665 * 12 11 10 14 14 C 1.40753 * 120.04994 * 359.74345 * 13 12 11 15 15 C 1.41441 * 120.17567 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00541 * 152.02810 * 15 14 13 17 17 C 1.39944 * 119.99813 * 332.02383 * 15 14 13 18 18 N 1.30823 * 120.00285 * 163.57259 * 17 15 14 19 19 Si 1.86802 * 119.99948 * 343.57657 * 17 15 14 20 20 H 1.48497 * 109.47504 * 94.11194 * 19 17 15 21 21 H 1.48502 * 109.47047 * 214.11481 * 19 17 15 22 22 H 1.48504 * 109.47034 * 334.11118 * 19 17 15 23 23 C 1.39051 * 120.02473 * 179.97438 * 10 8 7 24 24 C 1.38216 * 119.97850 * 179.97438 * 2 1 3 25 25 Cl 1.73600 * 120.04103 * 0.03747 * 24 2 1 26 26 H 1.08995 * 109.47297 * 89.99965 * 1 2 3 27 27 H 1.09001 * 109.46606 * 209.99456 * 1 2 3 28 28 H 1.08995 * 109.47307 * 329.99150 * 1 2 3 29 29 H 1.08000 * 119.93946 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.95968 * 179.97438 * 4 3 2 31 31 H 1.07994 * 120.02221 * 179.72189 * 5 4 3 32 32 H 1.08006 * 119.82485 * 0.02720 * 11 10 8 33 33 H 1.08002 * 119.79311 * 180.24347 * 12 11 10 34 34 H 1.08001 * 119.97330 * 179.76991 * 13 12 11 35 35 H 0.96997 * 119.99980 * 180.02562 * 18 17 15 36 36 H 1.08001 * 120.21249 * 359.94956 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1978 0.0000 4 6 3.5804 1.2014 0.0005 5 6 4.2760 0.0074 -0.0040 6 6 3.5864 -1.1957 0.0018 7 8 4.2684 -2.3715 0.0031 8 6 4.5021 -2.9444 -1.1937 9 8 4.1962 -2.3630 -2.2154 10 6 5.1304 -4.2800 -1.2633 11 6 5.4884 -4.9479 -0.0866 12 6 6.0726 -6.2003 -0.1440 13 6 6.3184 -6.8003 -1.3594 14 6 5.9703 -6.1418 -2.5537 15 6 6.2210 -6.7556 -3.8031 16 1 5.5988 -6.5217 -4.6542 17 6 7.2756 -7.6659 -3.9364 18 7 7.3209 -8.4678 -4.9690 19 14 8.6184 -7.7360 -2.6397 20 1 8.2861 -8.7816 -1.6389 21 1 9.9144 -8.0638 -3.2864 22 1 8.7223 -6.4182 -1.9629 23 6 5.3714 -4.8720 -2.4982 24 6 2.1977 -1.1972 0.0005 25 17 1.3302 -2.7010 0.0002 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6566 2.1324 -0.0004 30 1 4.1174 2.1384 0.0001 31 1 5.3559 0.0112 -0.0081 32 1 5.3038 -4.4847 0.8714 33 1 6.3416 -6.7093 0.7698 34 1 6.7783 -7.7768 -1.3959 35 1 8.0517 -9.0990 -5.0611 36 1 5.0999 -4.3590 -3.4091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774657899.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:50 Heat of formation + Delta-G solvation = -42.849904 kcal Electronic energy + Delta-G solvation = -22705.407959 eV Core-core repulsion = 19145.265920 eV Total energy + Delta-G solvation = -3560.142039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.065 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.07544 -39.09433 -37.76571 -36.52312 -36.40173 -33.78056 -32.81779 -31.07185 -30.33669 -29.96864 -27.25204 -25.51584 -24.45995 -22.60107 -21.92263 -20.77903 -20.41666 -18.16303 -17.62269 -16.79175 -16.70757 -16.36740 -15.69235 -14.76170 -14.73115 -14.63557 -14.30957 -13.93985 -13.74239 -13.53826 -12.88262 -12.82732 -12.77537 -12.52900 -12.18179 -11.97698 -11.87848 -11.69081 -11.57965 -11.18289 -11.14797 -10.87268 -10.66935 -10.60186 -10.23634 -9.97997 -9.73847 -9.31748 -8.89311 -8.80062 -8.02988 -7.87424 -7.06613 -4.62750 0.80467 0.94714 1.57141 2.02299 2.44890 2.87201 2.99987 3.12938 3.16187 3.27151 3.51024 3.86679 4.36657 4.43062 4.60044 4.84360 4.90070 5.01037 5.22530 5.32206 5.36395 5.38068 5.58969 5.81542 5.86897 5.95293 5.99916 6.08546 6.14031 6.24180 6.41457 6.55425 6.56762 6.76747 6.86786 7.10962 7.32552 7.41247 7.64114 7.80780 8.19474 8.21629 8.42410 8.62803 9.95300 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.003252 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.858142 B = 8606.929771 C = 8773.087682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.113 4.113 4 C -0.099 4.099 5 C -0.116 4.116 6 C 0.108 3.892 7 O -0.289 6.289 8 C 0.514 3.486 9 O -0.498 6.498 10 C -0.092 4.092 11 C -0.193 4.193 12 C -0.086 4.086 13 C -0.215 4.215 14 C 0.079 3.921 15 C -0.439 4.439 16 H 0.095 0.905 17 C 0.082 3.918 18 N -0.802 5.802 19 Si 0.913 3.087 20 H -0.268 1.268 21 H -0.289 1.289 22 H -0.242 1.242 23 C -0.132 4.132 24 C -0.046 4.046 25 Cl -0.048 7.048 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.288 0.712 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.530 14.716 11.031 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.131 4.131 4 C -0.117 4.117 5 C -0.134 4.134 6 C 0.066 3.934 7 O -0.205 6.205 8 C 0.361 3.639 9 O -0.384 6.384 10 C -0.093 4.093 11 C -0.212 4.212 12 C -0.104 4.104 13 C -0.234 4.234 14 C 0.076 3.924 15 C -0.467 4.467 16 H 0.113 0.887 17 C -0.138 4.138 18 N -0.425 5.425 19 Si 0.739 3.261 20 H -0.195 1.195 21 H -0.217 1.217 22 H -0.165 1.165 23 C -0.152 4.152 24 C -0.073 4.073 25 Cl -0.019 7.019 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.603 14.562 10.483 19.487 hybrid contribution 0.583 -0.304 0.400 0.769 sum -7.020 14.258 10.883 19.261 Atomic orbital electron populations 1.20880 0.89810 1.03571 1.03240 1.19684 0.96953 0.90822 0.99365 1.21045 0.94187 0.97102 1.00737 1.21090 0.94140 0.97728 0.98750 1.21273 1.01055 0.90706 1.00380 1.18300 0.88325 0.85580 1.01231 1.84744 1.67878 1.33210 1.34628 1.22227 0.75365 0.86298 0.79961 1.90798 1.49271 1.63453 1.34915 1.18655 1.04955 0.89884 0.95850 1.20606 1.07844 0.96901 0.95878 1.20566 0.98391 0.94707 0.96752 1.21261 1.09055 1.00362 0.92728 1.17625 0.91222 0.90270 0.93239 1.19524 1.12637 1.18291 0.96220 0.88735 1.26189 0.99266 0.92088 0.96235 1.69664 1.30318 1.14359 1.28156 0.86308 0.78501 0.81233 0.80036 1.19473 1.21690 1.16544 1.21248 1.04131 0.95056 0.94762 1.21162 0.91243 0.88411 1.06522 1.98385 1.75951 1.30937 1.96589 0.90355 0.90659 0.90851 0.84708 0.84617 0.84316 0.87175 0.87801 0.87616 0.90165 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.61 36.01 0.35 -0.70 16 2 C -0.07 -0.78 5.88 -104.61 -0.62 -1.40 16 3 C -0.11 -1.09 9.70 -39.56 -0.38 -1.48 16 4 C -0.10 -1.00 10.04 -39.60 -0.40 -1.40 16 5 C -0.12 -1.51 9.99 -39.44 -0.39 -1.91 16 6 C 0.11 1.73 4.92 -39.18 -0.19 1.54 16 7 O -0.29 -5.25 8.75 -24.85 -0.22 -5.47 16 8 C 0.51 10.62 7.67 34.62 0.27 10.89 16 9 O -0.50 -11.12 16.11 -19.24 -0.31 -11.43 16 10 C -0.09 -2.02 5.87 -105.06 -0.62 -2.64 16 11 C -0.19 -3.93 9.62 -38.91 -0.37 -4.30 16 12 C -0.09 -1.77 10.01 -39.73 -0.40 -2.16 16 13 C -0.21 -4.95 7.09 -38.81 -0.28 -5.22 16 14 C 0.08 1.97 5.17 -106.87 -0.55 1.42 16 15 C -0.44 -11.59 9.59 -37.72 -0.36 -11.95 16 16 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 17 C 0.08 2.08 5.44 -17.34 -0.09 1.99 16 18 N -0.80 -20.79 13.93 55.55 0.77 -20.01 16 19 Si 0.91 19.97 24.41 -169.99 -4.15 15.82 16 20 H -0.27 -5.63 6.65 56.52 0.38 -5.26 16 21 H -0.29 -6.13 7.11 56.52 0.40 -5.72 16 22 H -0.24 -5.40 6.75 56.52 0.38 -5.02 16 23 C -0.13 -3.15 9.34 -38.43 -0.36 -3.51 16 24 C -0.05 -0.68 6.33 -39.36 -0.25 -0.93 16 25 Cl -0.05 -0.73 26.70 -51.86 -1.38 -2.11 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.69 6.90 -51.93 -0.36 0.33 16 28 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.11 2.00 7.59 -52.48 -0.40 1.60 16 33 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.11 2.40 4.30 -52.49 -0.23 2.17 16 35 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 36 H 0.12 2.80 7.64 -52.49 -0.40 2.40 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -28.59 327.90 -8.52 -37.11 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -3.52 Total: 2.92 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -4.65 Total: -21.77 kcal Atomic # 7 Polarization: -20.79 SS G_CDS: 0.77 Total: -20.01 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.53 Total: -16.90 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.15 Total: 15.82 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.38 Total: -2.11 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.59 -8.52 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774657899.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.740 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds