Wall clock time and date at job start Tue Mar 31 2020 10:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.97661 * 2 1 4 4 C 1.38244 * 120.12270 * 179.97438 * 3 2 1 5 5 C 1.38184 * 120.07884 * 0.24197 * 4 3 2 6 6 C 1.38679 * 119.95231 * 359.48466 * 5 4 3 7 7 O 1.35930 * 120.06182 * 180.28145 * 6 5 4 8 8 C 1.34726 * 116.99710 * 266.16590 * 7 6 5 9 9 O 1.21470 * 119.99796 * 5.43322 * 8 7 6 10 10 C 1.47759 * 119.99635 * 185.43900 * 8 7 6 11 11 C 1.39966 * 120.03285 * 359.71567 * 10 8 7 12 12 C 1.38311 * 120.35122 * 179.76785 * 11 10 8 13 13 C 1.37759 * 120.41908 * 0.51665 * 12 11 10 14 14 C 1.40753 * 120.04994 * 359.74345 * 13 12 11 15 15 C 1.41441 * 120.17567 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00541 * 152.02810 * 15 14 13 17 17 C 1.39944 * 119.99813 * 332.02383 * 15 14 13 18 18 N 1.30823 * 120.00285 * 163.57259 * 17 15 14 19 19 Si 1.86802 * 119.99948 * 343.57657 * 17 15 14 20 20 H 1.48497 * 109.47504 * 94.11194 * 19 17 15 21 21 H 1.48502 * 109.47047 * 214.11481 * 19 17 15 22 22 H 1.48504 * 109.47034 * 334.11118 * 19 17 15 23 23 C 1.39051 * 120.02473 * 179.97438 * 10 8 7 24 24 C 1.38216 * 119.97850 * 179.97438 * 2 1 3 25 25 Cl 1.73600 * 120.04103 * 0.03747 * 24 2 1 26 26 H 1.08995 * 109.47297 * 89.99965 * 1 2 3 27 27 H 1.09001 * 109.46606 * 209.99456 * 1 2 3 28 28 H 1.08995 * 109.47307 * 329.99150 * 1 2 3 29 29 H 1.08000 * 119.93946 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.95968 * 179.97438 * 4 3 2 31 31 H 1.07994 * 120.02221 * 179.72189 * 5 4 3 32 32 H 1.08006 * 119.82485 * 0.02720 * 11 10 8 33 33 H 1.08002 * 119.79311 * 180.24347 * 12 11 10 34 34 H 1.08001 * 119.97330 * 179.76991 * 13 12 11 35 35 H 0.96997 * 119.99980 * 180.02562 * 18 17 15 36 36 H 1.08001 * 120.21249 * 359.94956 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1978 0.0000 4 6 3.5804 1.2014 0.0005 5 6 4.2760 0.0074 -0.0040 6 6 3.5864 -1.1957 0.0018 7 8 4.2684 -2.3715 0.0031 8 6 4.5021 -2.9444 -1.1937 9 8 4.1962 -2.3630 -2.2154 10 6 5.1304 -4.2800 -1.2633 11 6 5.4884 -4.9479 -0.0866 12 6 6.0726 -6.2003 -0.1440 13 6 6.3184 -6.8003 -1.3594 14 6 5.9703 -6.1418 -2.5537 15 6 6.2210 -6.7556 -3.8031 16 1 5.5988 -6.5217 -4.6542 17 6 7.2756 -7.6659 -3.9364 18 7 7.3209 -8.4678 -4.9690 19 14 8.6184 -7.7360 -2.6397 20 1 8.2861 -8.7816 -1.6389 21 1 9.9144 -8.0638 -3.2864 22 1 8.7223 -6.4182 -1.9629 23 6 5.3714 -4.8720 -2.4982 24 6 2.1977 -1.1972 0.0005 25 17 1.3302 -2.7010 0.0002 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6566 2.1324 -0.0004 30 1 4.1174 2.1384 0.0001 31 1 5.3559 0.0112 -0.0081 32 1 5.3038 -4.4847 0.8714 33 1 6.3416 -6.7093 0.7698 34 1 6.7783 -7.7768 -1.3959 35 1 8.0517 -9.0990 -5.0611 36 1 5.0999 -4.3590 -3.4091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774657899.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:50 Heat of formation + Delta-G solvation = -56.433355 kcal Electronic energy + Delta-G solvation = -22705.996982 eV Core-core repulsion = 19145.265920 eV Total energy + Delta-G solvation = -3560.731062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.065 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43207 -40.31043 -39.39387 -37.91659 -37.59630 -35.64727 -33.70314 -32.76750 -32.00106 -31.18515 -28.06421 -27.34036 -26.01026 -23.79544 -23.03336 -22.53521 -21.84847 -19.87649 -18.98645 -18.15310 -17.90652 -17.74303 -17.35258 -16.53486 -16.03328 -15.87241 -15.60583 -15.28328 -14.97144 -14.64319 -14.59407 -14.40080 -13.97933 -13.66472 -13.45331 -13.40703 -13.02350 -12.95332 -12.75974 -12.68807 -12.56950 -12.41369 -12.30628 -11.88016 -11.74519 -11.71256 -11.56298 -11.09191 -9.84619 -9.79805 -9.78492 -9.71592 -8.95207 -6.60715 -0.22915 -0.15128 0.03746 0.66811 0.95712 1.24418 1.40779 1.42761 1.53953 1.65385 2.09010 2.51088 2.54320 3.34285 3.44208 3.68450 3.86147 4.06586 4.15247 4.19396 4.28534 4.35694 4.50498 4.53706 4.69298 4.73759 4.78613 4.81130 5.01094 5.05737 5.10488 5.16823 5.24907 5.29709 5.32983 5.55353 5.61629 5.72557 5.75708 6.01672 6.22133 6.55197 6.65873 6.69279 8.13215 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.003252 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.858142 B = 8606.929771 C = 8773.087682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.073 4.073 3 C -0.098 4.098 4 C -0.090 4.090 5 C -0.127 4.127 6 C 0.061 3.939 7 O -0.283 6.283 8 C 0.518 3.482 9 O -0.523 6.523 10 C -0.101 4.101 11 C -0.168 4.168 12 C -0.082 4.082 13 C -0.216 4.216 14 C 0.067 3.933 15 C -0.481 4.481 16 H 0.054 0.946 17 C 0.045 3.955 18 N -0.844 5.844 19 Si 0.966 3.034 20 H -0.245 1.245 21 H -0.277 1.277 22 H -0.248 1.248 23 C -0.157 4.157 24 C -0.068 4.068 25 Cl -0.066 7.066 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.178 0.822 30 H 0.176 0.824 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.113 0.887 35 H 0.297 0.703 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 17.102 14.535 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.074 4.074 3 C -0.116 4.116 4 C -0.107 4.107 5 C -0.145 4.145 6 C 0.019 3.981 7 O -0.198 6.198 8 C 0.367 3.633 9 O -0.412 6.412 10 C -0.102 4.102 11 C -0.187 4.187 12 C -0.099 4.099 13 C -0.235 4.235 14 C 0.064 3.936 15 C -0.510 4.510 16 H 0.073 0.927 17 C -0.170 4.170 18 N -0.470 5.470 19 Si 0.789 3.211 20 H -0.170 1.170 21 H -0.204 1.204 22 H -0.172 1.172 23 C -0.176 4.176 24 C -0.095 4.095 25 Cl -0.037 7.037 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.196 0.804 30 H 0.193 0.807 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.543 16.949 14.008 23.246 hybrid contribution 0.382 -0.761 -0.539 1.008 sum -7.160 16.188 13.469 22.243 Atomic orbital electron populations 1.20959 0.87944 1.04769 1.03767 1.20147 0.98473 0.90392 0.98424 1.21613 0.94280 0.97916 0.97746 1.21586 0.94611 0.98028 0.96495 1.21554 1.01718 0.90847 1.00383 1.18756 0.89049 0.85394 1.04920 1.84700 1.67888 1.34557 1.32688 1.21978 0.74820 0.85913 0.80625 1.90770 1.50228 1.64095 1.36109 1.18859 1.04726 0.90883 0.95722 1.21071 1.04795 0.96460 0.96403 1.21045 0.96896 0.94528 0.97476 1.21482 1.08491 1.00652 0.92903 1.17703 0.91794 0.90608 0.93489 1.19468 1.14308 1.21077 0.96158 0.92742 1.26920 1.00561 0.91256 0.98251 1.69693 1.31676 1.15583 1.30024 0.85500 0.76179 0.81305 0.78141 1.17015 1.20382 1.17186 1.21168 1.05823 0.95360 0.95283 1.21451 0.91064 0.88893 1.08132 1.98368 1.76178 1.32340 1.96780 0.90035 0.91467 0.87717 0.80422 0.80687 0.83685 0.84031 0.83150 0.86904 0.89218 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.61 71.24 0.68 -1.09 16 2 C -0.07 -1.53 5.88 -19.86 -0.12 -1.64 16 3 C -0.10 -1.48 9.70 22.28 0.22 -1.26 16 4 C -0.09 -1.46 10.04 22.26 0.22 -1.23 16 5 C -0.13 -3.07 9.99 22.36 0.22 -2.84 16 6 C 0.06 1.89 4.92 22.53 0.11 2.00 16 7 O -0.28 -10.16 8.75 -0.15 0.00 -10.16 16 8 C 0.52 21.63 7.67 70.34 0.54 22.17 16 9 O -0.52 -24.14 16.11 19.93 0.32 -23.82 16 10 C -0.10 -4.43 5.87 -20.15 -0.12 -4.54 16 11 C -0.17 -6.42 9.62 22.71 0.22 -6.20 16 12 C -0.08 -3.08 10.01 22.17 0.22 -2.86 16 13 C -0.22 -9.68 7.09 22.77 0.16 -9.52 16 14 C 0.07 3.41 5.17 -21.32 -0.11 3.30 16 15 C -0.48 -27.16 9.59 23.47 0.23 -26.93 16 16 H 0.05 3.36 8.06 -2.91 -0.02 3.33 16 17 C 0.05 2.39 5.44 85.26 0.46 2.86 16 18 N -0.84 -45.77 13.93 21.83 0.30 -45.47 16 19 Si 0.97 40.74 24.41 68.60 1.67 42.41 16 20 H -0.25 -9.38 6.65 99.48 0.66 -8.72 16 21 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.25 -10.60 6.75 99.48 0.67 -9.93 16 23 C -0.16 -7.80 9.34 23.02 0.21 -7.59 16 24 C -0.07 -1.96 6.33 22.42 0.14 -1.82 16 25 Cl -0.07 -2.00 26.70 -2.72 -0.07 -2.07 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.13 6.90 -2.39 -0.02 1.11 16 28 H 0.10 0.90 8.08 -2.39 -0.02 0.88 16 29 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 30 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.14 4.57 7.59 -2.91 -0.02 4.55 16 33 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 34 H 0.11 4.88 4.30 -2.91 -0.01 4.87 16 35 H 0.30 14.32 8.30 -92.71 -0.77 13.56 16 36 H 0.10 5.15 7.64 -2.91 -0.02 5.13 16 Total: -1.00 -67.18 327.90 6.57 -60.61 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.04 Total: 15.69 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 3.30 Total: -37.20 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.30 Total: -45.47 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: 0.32 Total: -33.98 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.67 Total: 42.41 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.07 Total: -2.07 kcal Total: -67.18 6.57 -60.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774657899.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.176 kcal (2) G-P(sol) polarization free energy of solvation -67.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds