Wall clock time and date at job start Tue Mar 31 2020 11:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48498 * 109.47218 * 270.00416 * 3 2 1 5 5 H 1.48502 * 109.46963 * 30.00058 * 3 2 1 6 6 H 1.48498 * 109.47163 * 149.99799 * 3 2 1 7 7 C 1.38808 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99556 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00181 * 180.02562 * 7 2 1 10 10 C 1.76200 * 99.99676 * 185.65766 * 9 7 2 11 11 C 1.39105 * 120.19454 * 6.85188 * 10 9 7 12 12 C 1.37919 * 120.05411 * 180.29907 * 11 10 9 13 13 C 1.38661 * 120.43089 * 359.67941 * 12 11 10 14 14 C 1.37805 * 120.38767 * 359.97438 * 13 12 11 15 15 C 1.39682 * 119.93385 * 0.02562 * 14 13 12 16 16 C 1.47434 * 120.21184 * 180.02562 * 15 14 13 17 17 O 1.21605 * 119.99533 * 179.97438 * 16 15 14 18 18 N 1.34772 * 119.99886 * 0.02562 * 16 15 14 19 19 N 1.40101 * 119.99758 * 180.02562 * 18 16 15 20 20 C 1.39000 * 119.99865 * 180.27667 * 19 18 16 21 21 C 1.39334 * 120.09693 * 179.72440 * 20 19 18 22 22 N 1.31922 * 119.89549 * 180.02562 * 21 20 19 23 23 C 1.32273 * 120.08127 * 359.97438 * 22 21 20 24 24 C 1.38153 * 120.19718 * 0.02562 * 23 22 21 25 25 N 1.32253 * 120.10726 * 359.72283 * 24 23 22 26 26 H 0.96996 * 119.99936 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.97698 * 0.02562 * 11 10 9 28 28 H 1.07998 * 119.78590 * 179.69829 * 12 11 10 29 29 H 1.08002 * 119.80319 * 180.02562 * 13 12 11 30 30 H 1.07993 * 120.03410 * 180.02562 * 14 13 12 31 31 H 0.97002 * 120.00374 * 359.97438 * 18 16 15 32 32 H 0.96992 * 120.00437 * 359.97438 * 19 18 16 33 33 H 1.08000 * 120.05181 * 359.97174 * 21 20 19 34 34 H 1.07998 * 119.89965 * 180.02562 * 23 22 21 35 35 H 1.07996 * 119.95005 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0096 -1.2021 -0.0005 8 1 1.4695 -2.1375 -0.0014 9 16 3.7716 -1.2021 0.0001 10 6 4.0775 -2.9287 -0.1720 11 6 3.0235 -3.8063 -0.4041 12 6 3.2655 -5.1580 -0.5322 13 6 4.5577 -5.6522 -0.4378 14 6 5.6161 -4.7982 -0.2153 15 6 5.3889 -3.4263 -0.0831 16 6 6.5168 -2.5071 0.1545 17 8 6.3145 -1.3134 0.2685 18 7 7.7719 -2.9896 0.2443 19 7 8.8437 -2.1161 0.4706 20 6 10.1389 -2.6131 0.5575 21 6 11.2069 -1.7455 0.7768 22 7 12.4346 -2.2214 0.8581 23 6 12.6519 -3.5201 0.7322 24 6 11.5956 -4.3835 0.5146 25 7 10.3612 -3.9153 0.4368 26 1 -0.4850 0.8400 -0.0004 27 1 2.0142 -3.4294 -0.4796 28 1 2.4434 -5.8360 -0.7074 29 1 4.7357 -6.7125 -0.5401 30 1 6.6201 -5.1892 -0.1432 31 1 7.9333 -3.9417 0.1530 32 1 8.6824 -1.1641 0.5623 33 1 11.0300 -0.6850 0.8792 34 1 13.6581 -3.9066 0.7996 35 1 11.7776 -5.4432 0.4128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775281775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:17 Heat of formation + Delta-G solvation = 90.555159 kcal Electronic energy + Delta-G solvation = -22263.945592 eV Core-core repulsion = 18776.217639 eV Total energy + Delta-G solvation = -3487.727953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24716 -39.81337 -37.86403 -36.28980 -34.13433 -32.81353 -32.71831 -30.84035 -30.49517 -28.80400 -25.99000 -25.01250 -24.06251 -23.11293 -22.12667 -20.86962 -19.14694 -18.19234 -17.80032 -17.05698 -16.78294 -16.49799 -15.83653 -15.47996 -15.22918 -14.81876 -14.64701 -14.61553 -14.08396 -13.93812 -13.37711 -13.13114 -12.74793 -12.64089 -12.08150 -11.98601 -11.78069 -11.42680 -11.25016 -11.21611 -11.00538 -10.61439 -10.12779 -9.79783 -9.73116 -9.52437 -9.39532 -8.92986 -8.58335 -8.38941 -7.71722 -6.89589 -6.55232 -4.27443 0.68309 0.99062 1.28624 1.77061 1.82273 2.78084 3.14692 3.18011 3.29695 3.38710 3.49905 3.55500 4.07867 4.14728 4.22951 4.26023 4.46710 4.56719 4.87897 4.88226 4.98890 5.11946 5.19603 5.22781 5.44448 5.71711 5.94330 6.02848 6.14148 6.36526 6.45149 6.63563 6.84495 6.94077 6.97026 7.26018 7.35341 7.55101 7.67867 7.70688 8.27158 8.45223 8.88260 10.51855 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.003505 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.673242 B = 7985.666904 C = 9579.977391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.104 3.896 3 Si 0.850 3.150 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.235 1.235 7 C -0.580 4.580 8 H 0.107 0.893 9 S 0.090 5.910 10 C -0.027 4.027 11 C -0.143 4.143 12 C -0.072 4.072 13 C -0.174 4.174 14 C -0.063 4.063 15 C -0.168 4.168 16 C 0.556 3.444 17 O -0.514 6.514 18 N -0.525 5.525 19 N -0.500 5.500 20 C 0.361 3.639 21 C -0.002 4.002 22 N -0.396 5.396 23 C -0.032 4.032 24 C 0.113 3.887 25 N -0.512 5.512 26 H 0.276 0.724 27 H 0.149 0.851 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.428 0.572 32 H 0.445 0.555 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.229 -9.567 0.227 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.108 4.108 3 Si 0.674 3.326 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.159 1.159 7 C -0.726 4.726 8 H 0.125 0.875 9 S 0.352 5.648 10 C -0.146 4.146 11 C -0.168 4.168 12 C -0.094 4.094 13 C -0.198 4.198 14 C -0.083 4.083 15 C -0.184 4.184 16 C 0.346 3.654 17 O -0.390 6.390 18 N -0.275 5.275 19 N -0.227 5.227 20 C 0.120 3.880 21 C -0.172 4.172 22 N -0.109 5.109 23 C -0.193 4.193 24 C -0.048 4.048 25 N -0.237 5.237 26 H 0.086 0.914 27 H 0.166 0.834 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.271 0.729 32 H 0.291 0.709 33 H 0.185 0.815 34 H 0.183 0.817 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 19.316 -7.377 0.418 20.681 hybrid contribution -0.772 -0.599 -0.167 0.991 sum 18.544 -7.976 0.252 20.188 Atomic orbital electron populations 1.69900 1.06161 1.28397 1.44840 1.24811 0.94544 0.99073 0.92340 0.86871 0.81994 0.83349 0.80394 1.18691 1.19287 1.15853 1.23513 0.91671 0.98428 1.59020 0.87524 1.84078 1.05399 0.97282 1.78016 1.22477 0.93644 1.01526 0.96995 1.21584 1.00121 0.92778 1.02281 1.21187 0.96539 0.95149 0.96547 1.20737 0.92774 0.98988 1.07311 1.20930 0.98342 0.91787 0.97284 1.18765 0.91035 0.92776 1.15792 1.18460 0.80682 0.88790 0.77469 1.90782 1.82750 1.15452 1.50031 1.44888 0.99110 1.07284 1.76220 1.43159 0.96072 1.06837 1.76637 1.19327 0.85050 0.91044 0.92558 1.22896 0.87178 1.00899 1.06272 1.68260 1.21051 1.15181 1.06416 1.23309 1.01060 0.89665 1.05225 1.23443 0.87217 1.01608 0.92512 1.67858 1.24439 1.12150 1.19213 0.91412 0.83413 0.86376 0.86496 0.86783 0.72871 0.70926 0.81489 0.81695 0.81298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 13.96 55.49 0.77 -23.80 16 2 C 0.10 2.87 5.50 -17.46 -0.10 2.77 16 3 Si 0.85 20.39 27.74 -169.99 -4.71 15.68 16 4 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.23 -5.61 6.74 56.52 0.38 -5.23 16 7 C -0.58 -15.85 9.54 30.94 0.30 -15.55 16 8 H 0.11 3.00 5.21 -52.48 -0.27 2.72 16 9 S 0.09 2.22 16.53 -107.50 -1.78 0.44 16 10 C -0.03 -0.58 6.14 -38.39 -0.24 -0.81 16 11 C -0.14 -2.85 9.22 -39.38 -0.36 -3.21 16 12 C -0.07 -1.15 10.03 -39.54 -0.40 -1.55 16 13 C -0.17 -2.46 10.02 -39.58 -0.40 -2.85 16 14 C -0.06 -0.92 9.53 -39.20 -0.37 -1.29 16 15 C -0.17 -3.05 5.89 -104.75 -0.62 -3.66 16 16 C 0.56 9.83 7.87 -12.52 -0.10 9.73 16 17 O -0.51 -10.62 13.61 5.27 0.07 -10.55 16 18 N -0.52 -7.31 6.24 30.43 0.19 -7.12 16 19 N -0.50 -6.17 6.42 31.21 0.20 -5.97 16 20 C 0.36 4.04 7.60 -154.73 -1.18 2.86 16 21 C 0.00 -0.02 11.08 -17.11 -0.19 -0.20 16 22 N -0.40 -4.09 10.49 -12.88 -0.14 -4.22 16 23 C -0.03 -0.26 11.21 -17.39 -0.19 -0.46 16 24 C 0.11 0.91 11.21 -17.40 -0.20 0.71 16 25 N -0.51 -5.54 9.54 -12.24 -0.12 -5.65 16 26 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.15 3.22 5.04 -52.49 -0.26 2.95 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.11 1.27 6.40 -52.49 -0.34 0.93 16 31 H 0.43 5.25 6.00 -182.59 -1.10 4.15 16 32 H 0.45 5.21 8.01 -182.60 -1.46 3.75 16 33 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 319.60 15.07 4.82 4.82 Total: -1.00 -32.27 319.60 -9.43 -41.70 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.70 Total: 8.20 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -4.04 Total: -13.53 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.91 Total: -46.76 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.71 Total: 15.68 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.78 Total: 0.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.27 -9.43 -41.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775281775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.259 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds