Wall clock time and date at job start Tue Mar 31 2020 11:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48498 * 109.47218 * 270.00416 * 3 2 1 5 5 H 1.48502 * 109.46963 * 30.00058 * 3 2 1 6 6 H 1.48498 * 109.47163 * 149.99799 * 3 2 1 7 7 C 1.38808 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99556 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00181 * 180.02562 * 7 2 1 10 10 C 1.76200 * 99.99676 * 185.65766 * 9 7 2 11 11 C 1.39105 * 120.19454 * 6.85188 * 10 9 7 12 12 C 1.37919 * 120.05411 * 180.29907 * 11 10 9 13 13 C 1.38661 * 120.43089 * 359.67941 * 12 11 10 14 14 C 1.37805 * 120.38767 * 359.97438 * 13 12 11 15 15 C 1.39682 * 119.93385 * 0.02562 * 14 13 12 16 16 C 1.47434 * 120.21184 * 180.02562 * 15 14 13 17 17 O 1.21605 * 119.99533 * 179.97438 * 16 15 14 18 18 N 1.34772 * 119.99886 * 0.02562 * 16 15 14 19 19 N 1.40101 * 119.99758 * 180.02562 * 18 16 15 20 20 C 1.39000 * 119.99865 * 180.27667 * 19 18 16 21 21 C 1.39334 * 120.09693 * 179.72440 * 20 19 18 22 22 N 1.31922 * 119.89549 * 180.02562 * 21 20 19 23 23 C 1.32273 * 120.08127 * 359.97438 * 22 21 20 24 24 C 1.38153 * 120.19718 * 0.02562 * 23 22 21 25 25 N 1.32253 * 120.10726 * 359.72283 * 24 23 22 26 26 H 0.96996 * 119.99936 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.97698 * 0.02562 * 11 10 9 28 28 H 1.07998 * 119.78590 * 179.69829 * 12 11 10 29 29 H 1.08002 * 119.80319 * 180.02562 * 13 12 11 30 30 H 1.07993 * 120.03410 * 180.02562 * 14 13 12 31 31 H 0.97002 * 120.00374 * 359.97438 * 18 16 15 32 32 H 0.96992 * 120.00437 * 359.97438 * 19 18 16 33 33 H 1.08000 * 120.05181 * 359.97174 * 21 20 19 34 34 H 1.07998 * 119.89965 * 180.02562 * 23 22 21 35 35 H 1.07996 * 119.95005 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0096 -1.2021 -0.0005 8 1 1.4695 -2.1375 -0.0014 9 16 3.7716 -1.2021 0.0001 10 6 4.0775 -2.9287 -0.1720 11 6 3.0235 -3.8063 -0.4041 12 6 3.2655 -5.1580 -0.5322 13 6 4.5577 -5.6522 -0.4378 14 6 5.6161 -4.7982 -0.2153 15 6 5.3889 -3.4263 -0.0831 16 6 6.5168 -2.5071 0.1545 17 8 6.3145 -1.3134 0.2685 18 7 7.7719 -2.9896 0.2443 19 7 8.8437 -2.1161 0.4706 20 6 10.1389 -2.6131 0.5575 21 6 11.2069 -1.7455 0.7768 22 7 12.4346 -2.2214 0.8581 23 6 12.6519 -3.5201 0.7322 24 6 11.5956 -4.3835 0.5146 25 7 10.3612 -3.9153 0.4368 26 1 -0.4850 0.8400 -0.0004 27 1 2.0142 -3.4294 -0.4796 28 1 2.4434 -5.8360 -0.7074 29 1 4.7357 -6.7125 -0.5401 30 1 6.6201 -5.1892 -0.1432 31 1 7.9333 -3.9417 0.1530 32 1 8.6824 -1.1641 0.5623 33 1 11.0300 -0.6850 0.8792 34 1 13.6581 -3.9066 0.7996 35 1 11.7776 -5.4432 0.4128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775281775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:16 Heat of formation + Delta-G solvation = 67.725694 kcal Electronic energy + Delta-G solvation = -22264.935552 eV Core-core repulsion = 18776.217639 eV Total energy + Delta-G solvation = -3488.717913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02227 -41.11550 -39.20375 -37.38702 -34.92734 -34.83013 -33.82415 -32.04030 -31.90549 -29.74871 -28.00232 -25.84748 -25.04067 -24.20319 -23.48624 -22.16533 -20.48209 -19.45250 -19.08291 -18.13954 -17.66163 -17.54760 -17.31376 -16.91242 -16.49111 -16.18368 -15.75471 -15.61453 -15.40484 -15.18529 -15.09176 -14.36161 -13.87126 -13.76078 -13.69352 -13.27164 -13.12334 -13.09147 -12.55477 -12.53488 -12.28908 -12.04901 -11.71358 -11.49075 -11.35454 -10.67850 -10.58999 -10.22419 -10.07816 -9.94831 -8.79027 -8.60468 -8.56019 -6.32195 -0.16559 0.03174 0.27809 0.43648 0.73422 0.99466 1.23293 1.39490 1.60947 1.82273 2.14226 2.54493 2.70466 2.76180 2.84119 2.92658 3.47751 3.51336 3.54562 3.88994 3.92307 4.21027 4.31015 4.43259 4.53576 4.56118 4.64364 4.72554 5.00183 5.23309 5.30863 5.44221 5.58548 5.61124 5.65366 5.99053 6.02237 6.15945 6.30156 6.62170 6.83212 6.89083 7.22716 8.50665 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.003505 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.673242 B = 7985.666904 C = 9579.977391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.054 3.946 3 Si 0.906 3.094 4 H -0.258 1.258 5 H -0.254 1.254 6 H -0.238 1.238 7 C -0.586 4.586 8 H 0.082 0.918 9 S 0.029 5.971 10 C -0.049 4.049 11 C -0.168 4.168 12 C -0.066 4.066 13 C -0.145 4.145 14 C -0.054 4.054 15 C -0.166 4.166 16 C 0.553 3.447 17 O -0.550 6.550 18 N -0.505 5.505 19 N -0.510 5.510 20 C 0.344 3.656 21 C -0.008 4.008 22 N -0.419 5.419 23 C -0.023 4.023 24 C 0.113 3.887 25 N -0.526 5.526 26 H 0.279 0.721 27 H 0.116 0.884 28 H 0.150 0.850 29 H 0.171 0.829 30 H 0.161 0.839 31 H 0.438 0.562 32 H 0.445 0.555 33 H 0.181 0.819 34 H 0.199 0.801 35 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.190 -13.134 0.068 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.153 4.153 3 Si 0.727 3.273 4 H -0.182 1.182 5 H -0.178 1.178 6 H -0.162 1.162 7 C -0.732 4.732 8 H 0.100 0.900 9 S 0.285 5.715 10 C -0.167 4.167 11 C -0.193 4.193 12 C -0.087 4.087 13 C -0.167 4.167 14 C -0.074 4.074 15 C -0.181 4.181 16 C 0.342 3.658 17 O -0.428 6.428 18 N -0.253 5.253 19 N -0.239 5.239 20 C 0.106 3.894 21 C -0.176 4.176 22 N -0.133 5.133 23 C -0.184 4.184 24 C -0.048 4.048 25 N -0.250 5.250 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.168 0.832 29 H 0.188 0.812 30 H 0.178 0.822 31 H 0.283 0.717 32 H 0.290 0.710 33 H 0.198 0.802 34 H 0.216 0.784 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 23.355 -11.048 0.257 25.838 hybrid contribution -1.589 -0.015 -0.134 1.594 sum 21.767 -11.063 0.123 24.417 Atomic orbital electron populations 1.69980 1.07433 1.29294 1.47519 1.25584 0.95278 1.02102 0.92319 0.86032 0.80748 0.79933 0.80562 1.18243 1.17801 1.16204 1.23640 0.93448 0.97630 1.58506 0.90049 1.83966 1.03035 1.01617 1.82876 1.22461 0.95616 0.99230 0.99354 1.21478 0.98524 0.94852 1.04414 1.21586 0.98982 0.93441 0.94667 1.21385 0.91114 1.01476 1.02708 1.21459 1.01004 0.89796 0.95152 1.19096 0.89916 0.94766 1.14289 1.18422 0.81744 0.88214 0.77446 1.90766 1.83362 1.16954 1.51762 1.44499 0.98720 1.07899 1.74219 1.43222 0.95895 1.06582 1.78228 1.19421 0.84524 0.91708 0.93754 1.23110 0.86916 1.01630 1.05966 1.68336 1.20998 1.16593 1.07350 1.23973 1.02779 0.88940 1.02678 1.24119 0.86092 1.03439 0.91114 1.67861 1.26040 1.11899 1.19229 0.91095 0.86649 0.83230 0.81163 0.82184 0.71712 0.70986 0.80185 0.78415 0.77416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.92 13.96 21.65 0.30 -54.62 16 2 C 0.05 3.16 5.50 84.87 0.47 3.62 16 3 Si 0.91 44.46 27.74 68.60 1.90 46.36 16 4 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.25 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 7 C -0.59 -34.44 9.54 67.96 0.65 -33.79 16 8 H 0.08 5.02 5.21 -2.91 -0.02 5.01 16 9 S 0.03 1.51 16.53 -56.49 -0.93 0.57 16 10 C -0.05 -2.15 6.14 23.04 0.14 -2.01 16 11 C -0.17 -6.85 9.22 22.40 0.21 -6.64 16 12 C -0.07 -1.91 10.03 22.29 0.22 -1.69 16 13 C -0.14 -3.25 10.02 22.27 0.22 -3.02 16 14 C -0.05 -1.32 9.53 22.52 0.21 -1.11 16 15 C -0.17 -5.82 5.89 -19.95 -0.12 -5.94 16 16 C 0.55 19.18 7.87 86.67 0.68 19.87 16 17 O -0.55 -23.34 13.61 -4.05 -0.06 -23.40 16 18 N -0.50 -13.06 6.24 -175.88 -1.10 -14.16 16 19 N -0.51 -12.00 6.42 -55.17 -0.35 -12.35 16 20 C 0.34 7.03 7.60 133.04 1.01 8.04 16 21 C -0.01 -0.14 11.08 84.94 0.94 0.80 16 22 N -0.42 -7.61 10.49 -194.68 -2.04 -9.65 16 23 C -0.02 -0.28 11.21 84.61 0.95 0.66 16 24 C 0.11 1.33 11.21 84.61 0.95 2.28 16 25 N -0.53 -9.62 9.54 -192.65 -1.84 -11.46 16 26 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 27 H 0.12 5.46 5.04 -2.91 -0.01 5.44 16 28 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 30 H 0.16 2.49 6.40 -2.91 -0.02 2.47 16 31 H 0.44 9.15 6.00 -213.32 -1.28 7.87 16 32 H 0.44 10.42 8.01 -213.33 -1.71 8.71 16 33 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 34 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -77.64 319.60 0.58 -77.06 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -1.84 Total: 20.57 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 6.54 Total: -18.92 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -5.03 Total: -102.24 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.06 Total: -23.40 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.90 Total: 46.36 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -0.93 Total: 0.57 kcal Total: -77.64 0.58 -77.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775281775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.784 kcal (2) G-P(sol) polarization free energy of solvation -77.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds