Wall clock time and date at job start Tue Mar 31 2020 11:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86804 * 120.00207 * 2 1 4 4 H 1.48496 * 109.47386 * 272.53115 * 3 2 1 5 5 H 1.48500 * 109.46580 * 32.53283 * 3 2 1 6 6 H 1.48504 * 109.47015 * 152.52736 * 3 2 1 7 7 C 1.39950 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99890 * 347.40720 * 7 2 1 9 9 C 1.41395 * 120.00381 * 167.40660 * 7 2 1 10 10 C 1.40732 * 120.24173 * 328.62961 * 9 7 2 11 11 C 1.37600 * 119.74765 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24291 * 359.72508 * 11 10 9 13 13 C 1.38612 * 120.50146 * 0.54983 * 12 11 10 14 14 C 1.37630 * 120.25038 * 359.45188 * 13 12 11 15 15 C 1.50697 * 120.12930 * 180.29605 * 14 13 12 16 16 C 1.50697 * 109.47131 * 264.99663 * 15 14 13 17 17 O 1.21283 * 120.00072 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00195 * 179.97438 * 16 15 14 19 19 C 1.39457 * 120.00351 * 175.13345 * 18 16 15 20 20 C 1.39028 * 119.68410 * 185.24951 * 19 18 16 21 21 C 1.38359 * 119.11459 * 179.79497 * 20 19 18 22 22 C 1.38932 * 118.48309 * 0.47794 * 21 20 19 23 23 Cl 1.73595 * 120.35819 * 179.77076 * 22 21 20 24 24 C 1.38188 * 119.28321 * 359.74197 * 22 21 20 25 25 N 1.31933 * 120.83518 * 0.03036 * 24 22 21 26 26 H 0.97002 * 119.99858 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.13096 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.87779 * 179.97438 * 11 10 9 29 29 H 1.08004 * 119.74785 * 180.29332 * 12 11 10 30 30 H 1.08001 * 119.86969 * 179.71865 * 13 12 11 31 31 H 1.08995 * 109.47471 * 24.99998 * 15 14 13 32 32 H 1.09004 * 109.47201 * 145.00116 * 15 14 13 33 33 H 0.97000 * 120.00044 * 355.14551 * 18 16 15 34 34 H 1.07999 * 120.43814 * 0.03191 * 20 19 18 35 35 H 1.07990 * 120.75761 * 180.22822 * 21 20 19 36 36 H 1.07998 * 119.58036 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4363 2.0774 -1.3986 5 1 1.4675 2.6365 0.7530 6 1 3.5656 1.4252 0.6459 7 6 2.0080 -1.2120 -0.0005 8 1 1.4874 -2.1362 0.2030 9 6 3.3964 -1.2267 -0.2675 10 6 3.9621 -0.2709 -1.1318 11 6 5.3144 -0.2949 -1.3849 12 6 6.1198 -1.2525 -0.7875 13 6 5.5725 -2.2022 0.0610 14 6 4.2225 -2.1972 0.3285 15 6 3.6314 -3.2269 1.2566 16 6 3.1011 -4.3843 0.4503 17 8 3.1943 -4.3743 -0.7589 18 7 2.5240 -5.4311 1.0730 19 6 1.9427 -6.4540 0.3243 20 6 1.2541 -7.4743 0.9704 21 6 0.6784 -8.4810 0.2157 22 6 0.8206 -8.4373 -1.1656 23 17 0.1231 -9.6784 -2.1590 24 6 1.5227 -7.3951 -1.7402 25 7 2.0567 -6.4469 -0.9942 26 1 -0.4850 0.8401 0.0004 27 1 3.3372 0.4781 -1.5953 28 1 5.7507 0.4373 -2.0481 29 1 7.1811 -1.2611 -0.9881 30 1 6.2087 -2.9463 0.5172 31 1 4.4010 -3.5833 1.9412 32 1 2.8178 -2.7780 1.8264 33 1 2.5128 -5.4729 2.0421 34 1 1.1665 -7.4790 2.0468 35 1 0.1344 -9.2844 0.6898 36 1 1.6366 -7.3566 -2.8135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776748854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:05 Heat of formation + Delta-G solvation = 25.117058 kcal Electronic energy + Delta-G solvation = -22862.534441 eV Core-core repulsion = 19337.632421 eV Total energy + Delta-G solvation = -3524.902020 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70475 -39.01049 -37.62008 -36.63176 -34.52568 -33.57147 -32.53113 -31.94458 -30.36057 -29.85804 -27.05271 -24.94286 -24.09063 -23.16284 -21.45010 -20.67730 -19.50087 -18.09971 -17.34069 -16.89585 -16.68980 -15.73983 -15.62307 -15.28160 -14.68403 -14.39660 -14.25126 -13.78973 -13.48971 -13.43952 -13.26278 -12.70278 -12.68574 -12.25601 -12.14180 -11.92277 -11.44706 -11.33935 -11.20611 -10.80467 -10.72101 -10.31684 -10.24785 -9.96350 -9.86370 -9.67388 -9.58998 -9.12372 -8.86966 -8.15462 -7.60285 -7.51286 -6.90149 -4.48923 0.91088 1.13352 1.99329 2.51431 2.71032 3.08338 3.13148 3.14992 3.24531 3.32394 3.82901 3.99346 4.37608 4.53913 4.64668 4.79258 4.83993 5.25768 5.45925 5.52851 5.63478 5.76203 5.80425 5.91959 6.06298 6.11490 6.16364 6.24118 6.55159 6.69093 6.72574 6.94599 7.20743 7.29137 7.45085 7.64621 7.73638 7.89349 8.06723 8.13331 8.35811 8.66608 8.68399 8.82461 10.12105 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.017630 B = 0.003429 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.784594 B = 8163.702324 C = 8787.755372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.083 3.917 3 Si 0.913 3.087 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.243 1.243 7 C -0.443 4.443 8 H 0.088 0.912 9 C 0.111 3.889 10 C -0.233 4.233 11 C -0.079 4.079 12 C -0.240 4.240 13 C -0.067 4.067 14 C -0.170 4.170 15 C -0.071 4.071 16 C 0.501 3.499 17 O -0.446 6.446 18 N -0.668 5.668 19 C 0.379 3.621 20 C -0.206 4.206 21 C -0.038 4.038 22 C -0.134 4.134 23 Cl -0.067 7.067 24 C 0.154 3.846 25 N -0.460 5.460 26 H 0.284 0.716 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.415 0.585 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 -13.733 4.867 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.135 4.135 3 Si 0.740 3.260 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.166 1.166 7 C -0.472 4.472 8 H 0.106 0.894 9 C 0.108 3.892 10 C -0.252 4.252 11 C -0.097 4.097 12 C -0.259 4.259 13 C -0.085 4.085 14 C -0.172 4.172 15 C -0.110 4.110 16 C 0.287 3.713 17 O -0.311 6.311 18 N -0.315 5.315 19 C 0.147 3.853 20 C -0.230 4.230 21 C -0.064 4.064 22 C -0.165 4.165 23 Cl -0.039 7.039 24 C -0.005 4.005 25 N -0.174 5.174 26 H 0.094 0.906 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.252 0.748 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.498 -12.893 3.531 13.451 hybrid contribution -0.462 -0.090 0.691 0.837 sum 1.036 -12.983 4.222 13.692 Atomic orbital electron populations 1.69666 1.07982 1.30064 1.36174 1.26152 0.94776 1.01608 0.90993 0.86319 0.80945 0.79739 0.78961 1.19810 1.22194 1.16605 1.19419 0.91295 0.95232 1.41239 0.89406 1.17490 0.92981 0.90133 0.88639 1.21019 0.94895 1.04274 1.04983 1.20607 0.93893 0.97255 0.97965 1.20345 0.97775 1.01121 1.06687 1.20435 0.94146 0.96765 0.97187 1.19017 0.92698 1.01095 1.04364 1.20313 1.01242 0.92056 0.97419 1.21568 0.77548 0.82453 0.89710 1.90810 1.49871 1.76640 1.13795 1.44118 1.56911 1.20314 1.10166 1.18753 0.90174 0.87544 0.88840 1.21469 1.03854 0.96216 1.01435 1.21202 0.96019 0.97735 0.91445 1.21929 1.06287 0.95617 0.92674 1.98354 1.83320 1.52632 1.69595 1.22756 0.90358 0.86818 1.00613 1.67966 1.20498 1.24558 1.04409 0.90569 0.88254 0.88930 0.88917 0.89009 0.89960 0.87750 0.74838 0.83866 0.83775 0.81782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.81 13.93 55.55 0.77 -21.04 16 2 C 0.08 2.17 5.47 -17.34 -0.09 2.07 16 3 Si 0.91 20.91 24.41 -169.99 -4.15 16.76 16 4 H -0.27 -6.15 6.66 56.52 0.38 -5.78 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.24 -5.62 6.70 56.52 0.38 -5.24 16 7 C -0.44 -11.86 8.56 -37.74 -0.32 -12.18 16 8 H 0.09 2.48 7.05 -52.48 -0.37 2.11 16 9 C 0.11 2.80 5.13 -106.83 -0.55 2.26 16 10 C -0.23 -5.77 7.01 -38.87 -0.27 -6.05 16 11 C -0.08 -1.77 10.02 -39.66 -0.40 -2.16 16 12 C -0.24 -5.10 10.05 -39.29 -0.39 -5.50 16 13 C -0.07 -1.41 9.66 -39.67 -0.38 -1.80 16 14 C -0.17 -3.81 4.43 -103.92 -0.46 -4.27 16 15 C -0.07 -1.27 5.20 -29.04 -0.15 -1.43 16 16 C 0.50 9.55 7.40 -10.99 -0.08 9.47 16 17 O -0.45 -10.66 14.30 5.55 0.08 -10.58 16 18 N -0.67 -9.70 5.39 -11.42 -0.06 -9.76 16 19 C 0.38 5.72 7.42 -154.66 -1.15 4.58 16 20 C -0.21 -2.26 9.94 -39.24 -0.39 -2.65 16 21 C -0.04 -0.39 9.97 -39.28 -0.39 -0.78 16 22 C -0.13 -1.61 6.34 -39.34 -0.25 -1.86 16 23 Cl -0.07 -0.71 28.99 -51.86 -1.50 -2.21 16 24 C 0.15 2.23 10.97 -17.53 -0.19 2.04 16 25 N -0.46 -8.16 7.89 -12.33 -0.10 -8.26 16 26 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 27 H 0.10 2.47 4.46 -52.49 -0.23 2.23 16 28 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 30 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 32 H 0.10 1.87 7.15 -51.93 -0.37 1.50 16 33 H 0.42 4.06 8.70 -40.82 -0.36 3.71 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 325.01 15.07 4.90 4.90 Total: -1.00 -32.79 325.01 -9.01 -41.80 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -3.47 Total: 6.67 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -5.48 Total: -18.27 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.61 Total: -39.07 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.15 Total: 16.76 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.79 -9.01 -41.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776748854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.913 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds