Wall clock time and date at job start Tue Mar 31 2020 11:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86804 * 120.00207 * 2 1 4 4 H 1.48496 * 109.47386 * 272.53115 * 3 2 1 5 5 H 1.48500 * 109.46580 * 32.53283 * 3 2 1 6 6 H 1.48504 * 109.47015 * 152.52736 * 3 2 1 7 7 C 1.39950 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99890 * 347.40720 * 7 2 1 9 9 C 1.41395 * 120.00381 * 167.40660 * 7 2 1 10 10 C 1.40732 * 120.24173 * 328.62961 * 9 7 2 11 11 C 1.37600 * 119.74765 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24291 * 359.72508 * 11 10 9 13 13 C 1.38612 * 120.50146 * 0.54983 * 12 11 10 14 14 C 1.37630 * 120.25038 * 359.45188 * 13 12 11 15 15 C 1.50697 * 120.12930 * 180.29605 * 14 13 12 16 16 C 1.50697 * 109.47131 * 264.99663 * 15 14 13 17 17 O 1.21283 * 120.00072 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00195 * 179.97438 * 16 15 14 19 19 C 1.39457 * 120.00351 * 175.13345 * 18 16 15 20 20 C 1.39028 * 119.68410 * 185.24951 * 19 18 16 21 21 C 1.38359 * 119.11459 * 179.79497 * 20 19 18 22 22 C 1.38932 * 118.48309 * 0.47794 * 21 20 19 23 23 Cl 1.73595 * 120.35819 * 179.77076 * 22 21 20 24 24 C 1.38188 * 119.28321 * 359.74197 * 22 21 20 25 25 N 1.31933 * 120.83518 * 0.03036 * 24 22 21 26 26 H 0.97002 * 119.99858 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.13096 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.87779 * 179.97438 * 11 10 9 29 29 H 1.08004 * 119.74785 * 180.29332 * 12 11 10 30 30 H 1.08001 * 119.86969 * 179.71865 * 13 12 11 31 31 H 1.08995 * 109.47471 * 24.99998 * 15 14 13 32 32 H 1.09004 * 109.47201 * 145.00116 * 15 14 13 33 33 H 0.97000 * 120.00044 * 355.14551 * 18 16 15 34 34 H 1.07999 * 120.43814 * 0.03191 * 20 19 18 35 35 H 1.07990 * 120.75761 * 180.22822 * 21 20 19 36 36 H 1.07998 * 119.58036 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4363 2.0774 -1.3986 5 1 1.4675 2.6365 0.7530 6 1 3.5656 1.4252 0.6459 7 6 2.0080 -1.2120 -0.0005 8 1 1.4874 -2.1362 0.2030 9 6 3.3964 -1.2267 -0.2675 10 6 3.9621 -0.2709 -1.1318 11 6 5.3144 -0.2949 -1.3849 12 6 6.1198 -1.2525 -0.7875 13 6 5.5725 -2.2022 0.0610 14 6 4.2225 -2.1972 0.3285 15 6 3.6314 -3.2269 1.2566 16 6 3.1011 -4.3843 0.4503 17 8 3.1943 -4.3743 -0.7589 18 7 2.5240 -5.4311 1.0730 19 6 1.9427 -6.4540 0.3243 20 6 1.2541 -7.4743 0.9704 21 6 0.6784 -8.4810 0.2157 22 6 0.8206 -8.4373 -1.1656 23 17 0.1231 -9.6784 -2.1590 24 6 1.5227 -7.3951 -1.7402 25 7 2.0567 -6.4469 -0.9942 26 1 -0.4850 0.8401 0.0004 27 1 3.3372 0.4781 -1.5953 28 1 5.7507 0.4373 -2.0481 29 1 7.1811 -1.2611 -0.9881 30 1 6.2087 -2.9463 0.5172 31 1 4.4010 -3.5833 1.9412 32 1 2.8178 -2.7780 1.8264 33 1 2.5128 -5.4729 2.0421 34 1 1.1665 -7.4790 2.0468 35 1 0.1344 -9.2844 0.6898 36 1 1.6366 -7.3566 -2.8135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776748854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:04 Heat of formation + Delta-G solvation = 4.630710 kcal Electronic energy + Delta-G solvation = -22863.422796 eV Core-core repulsion = 19337.632421 eV Total energy + Delta-G solvation = -3525.790374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84787 -40.41571 -39.24157 -37.59180 -35.80539 -35.47009 -33.64509 -33.42322 -32.18859 -31.02131 -28.60559 -26.74918 -25.15483 -24.29178 -23.22134 -22.13576 -21.03717 -19.31434 -19.15783 -18.17707 -17.68065 -17.46341 -16.80424 -16.69216 -16.20607 -15.78400 -15.64144 -15.43501 -14.92751 -14.85940 -14.49902 -14.20671 -13.86174 -13.73962 -13.61891 -13.29106 -13.13491 -12.69199 -12.66522 -12.49849 -12.25264 -11.97468 -11.54405 -11.51078 -11.38603 -11.16478 -10.96218 -10.90209 -10.12798 -9.39111 -9.29211 -9.22840 -8.83618 -6.46352 -0.12389 0.20125 0.78135 0.90160 1.05319 1.27429 1.39475 1.49108 1.75936 1.99147 2.13764 2.66525 2.75589 3.32105 3.56201 3.76917 3.86292 3.92728 4.05449 4.27859 4.36045 4.44583 4.58331 4.60208 4.71734 4.73420 4.90149 4.92493 4.97959 5.13604 5.16565 5.37768 5.64883 5.66691 5.86029 5.94541 6.04798 6.21687 6.29009 6.45782 6.79310 6.90547 6.96449 7.39980 8.24274 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.017630 B = 0.003429 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.784594 B = 8163.702324 C = 8787.755372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.045 3.955 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.247 1.247 7 C -0.467 4.467 8 H 0.055 0.945 9 C 0.084 3.916 10 C -0.258 4.258 11 C -0.092 4.092 12 C -0.228 4.228 13 C -0.077 4.077 14 C -0.171 4.171 15 C -0.070 4.070 16 C 0.503 3.497 17 O -0.508 6.508 18 N -0.653 5.653 19 C 0.344 3.656 20 C -0.182 4.182 21 C -0.033 4.033 22 C -0.126 4.126 23 Cl -0.052 7.052 24 C 0.128 3.872 25 N -0.513 5.513 26 H 0.290 0.710 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.101 0.899 33 H 0.437 0.563 34 H 0.187 0.813 35 H 0.184 0.816 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 -15.308 6.663 16.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.168 4.168 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.497 4.497 8 H 0.073 0.927 9 C 0.082 3.918 10 C -0.277 4.277 11 C -0.110 4.110 12 C -0.246 4.246 13 C -0.095 4.095 14 C -0.173 4.173 15 C -0.109 4.109 16 C 0.291 3.709 17 O -0.378 6.378 18 N -0.303 5.303 19 C 0.113 3.887 20 C -0.205 4.205 21 C -0.059 4.059 22 C -0.157 4.157 23 Cl -0.024 7.024 24 C -0.031 4.031 25 N -0.229 5.229 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.119 0.881 33 H 0.278 0.722 34 H 0.205 0.795 35 H 0.201 0.799 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.118 -14.513 5.367 15.784 hybrid contribution -0.833 0.156 0.096 0.853 sum 2.285 -14.357 5.463 15.530 Atomic orbital electron populations 1.69709 1.09014 1.30996 1.38921 1.26770 0.95331 1.04006 0.90661 0.85495 0.79659 0.76828 0.78884 1.19775 1.20772 1.17000 1.19322 0.92322 0.94384 1.43699 0.92667 1.17733 0.92798 0.91743 0.89573 1.21171 0.96260 1.04607 1.05644 1.20979 0.93086 0.98418 0.98509 1.20898 0.99509 0.99558 1.04678 1.20920 0.94008 0.97476 0.97085 1.19528 0.93428 1.00592 1.03765 1.20377 1.02442 0.91048 0.97082 1.21612 0.77079 0.83283 0.88965 1.90784 1.52709 1.78149 1.16124 1.43734 1.56022 1.19311 1.11195 1.19115 0.92093 0.88954 0.88566 1.21875 1.01047 0.94086 1.03472 1.21694 0.95317 0.98315 0.90563 1.22009 1.04968 0.94954 0.93775 1.98361 1.82882 1.51641 1.69492 1.22788 0.91886 0.87697 1.00700 1.67764 1.22286 1.26412 1.06406 0.89981 0.89211 0.86143 0.85345 0.85279 0.85159 0.88070 0.72235 0.79547 0.79861 0.81957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.32 13.93 21.83 0.30 -48.02 16 2 C 0.05 2.48 5.47 85.26 0.47 2.94 16 3 Si 0.97 44.27 24.41 68.60 1.67 45.95 16 4 H -0.27 -12.23 6.66 99.48 0.66 -11.57 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 6 H -0.25 -11.27 6.70 99.48 0.67 -10.60 16 7 C -0.47 -26.31 8.56 23.46 0.20 -26.11 16 8 H 0.06 3.36 7.05 -2.91 -0.02 3.34 16 9 C 0.08 4.35 5.13 -21.29 -0.11 4.24 16 10 C -0.26 -12.86 7.01 22.73 0.16 -12.70 16 11 C -0.09 -3.95 10.02 22.22 0.22 -3.73 16 12 C -0.23 -8.94 10.05 22.46 0.23 -8.72 16 13 C -0.08 -3.03 9.66 22.22 0.21 -2.82 16 14 C -0.17 -7.59 4.43 -19.41 -0.09 -7.67 16 15 C -0.07 -2.47 5.20 29.10 0.15 -2.32 16 16 C 0.50 19.34 7.40 87.66 0.65 19.99 16 17 O -0.51 -25.21 14.30 -3.04 -0.04 -25.25 16 18 N -0.65 -18.49 5.39 -308.42 -1.66 -20.15 16 19 C 0.34 10.20 7.42 132.90 0.99 11.18 16 20 C -0.18 -3.46 9.94 22.49 0.22 -3.24 16 21 C -0.03 -0.58 9.97 22.46 0.22 -0.36 16 22 C -0.13 -2.88 6.34 22.42 0.14 -2.74 16 23 Cl -0.05 -1.02 28.99 -2.72 -0.08 -1.10 16 24 C 0.13 3.80 10.97 84.67 0.93 4.73 16 25 N -0.51 -18.84 7.89 -192.92 -1.52 -20.36 16 26 H 0.29 14.78 8.30 -92.71 -0.77 14.02 16 27 H 0.09 4.55 4.46 -2.91 -0.01 4.54 16 28 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 29 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.13 3.24 8.05 -2.39 -0.02 3.22 16 32 H 0.10 3.66 7.15 -2.38 -0.02 3.64 16 33 H 0.44 7.65 8.70 -92.71 -0.81 6.84 16 34 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.18 1.82 8.06 -2.92 -0.02 1.79 16 36 H 0.16 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -77.02 325.01 3.52 -73.50 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.25 Total: 22.76 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 4.60 Total: -27.31 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -2.88 Total: -88.54 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.04 Total: -25.25 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.67 Total: 45.95 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -77.02 3.52 -73.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776748854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.129 kcal (2) G-P(sol) polarization free energy of solvation -77.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds