Wall clock time and date at job start Tue Mar 31 2020 11:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48502 * 109.46841 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.46959 * 29.99798 * 3 2 1 6 6 H 1.48497 * 109.47400 * 150.00179 * 3 2 1 7 7 C 1.37874 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00142 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47301 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00538 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99608 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00700 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00365 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47345 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.47070 * 305.00306 * 15 14 13 17 17 O 1.42903 * 109.46923 * 65.00471 * 15 14 13 18 18 C 1.50701 * 109.47419 * 185.00232 * 15 14 13 19 19 C 1.38459 * 120.01787 * 284.73135 * 18 15 14 20 20 F 1.35097 * 120.01953 * 359.97062 * 19 18 15 21 21 C 1.38451 * 119.96224 * 179.74576 * 19 18 15 22 22 C 1.38227 * 119.99522 * 0.52340 * 21 19 18 23 23 C 1.38199 * 120.04352 * 359.72744 * 22 21 19 24 24 C 1.38289 * 120.01935 * 105.00205 * 18 15 14 25 25 Cl 1.73600 * 120.00036 * 359.97438 * 24 18 15 26 26 H 0.96995 * 119.99748 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47200 * 59.99841 * 9 7 2 28 28 H 1.08999 * 109.47131 * 299.99716 * 9 7 2 29 29 H 0.97008 * 119.99995 * 359.97438 * 10 9 7 30 30 H 0.97008 * 119.99832 * 0.02562 * 13 11 10 31 31 H 1.09008 * 109.47020 * 60.00160 * 14 13 11 32 32 H 1.08997 * 109.47417 * 300.00155 * 14 13 11 33 33 H 0.96700 * 114.00234 * 59.99815 * 17 15 14 34 34 H 1.07995 * 120.00318 * 180.25276 * 21 19 18 35 35 H 1.08005 * 119.97619 * 179.70605 * 22 21 19 36 36 H 1.07994 * 119.98364 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7539 -4.8833 -0.0019 12 8 0.5584 -5.1055 -0.0019 13 7 2.6296 -5.9078 -0.0022 14 6 2.1413 -7.2889 -0.0020 15 6 3.3313 -8.2506 -0.0031 16 1 3.9838 -8.0204 -0.8453 17 8 4.0605 -8.1074 1.2175 18 6 2.8323 -9.6672 -0.1268 19 6 2.2531 -10.2953 0.9628 20 9 2.1355 -9.6387 2.1376 21 6 1.7903 -11.5949 0.8463 22 6 1.9165 -12.2684 -0.3542 23 6 2.4993 -11.6434 -1.4402 24 6 2.9578 -10.3426 -1.3271 25 17 3.6896 -9.5583 -2.6920 26 1 -0.4849 0.8400 -0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8880 29 1 3.1568 -3.4354 -0.0010 30 1 3.5834 -5.7305 -0.0017 31 1 1.5355 -7.4602 -0.8919 32 1 1.5361 -7.4603 0.8881 33 1 3.5410 -8.2972 2.0107 34 1 1.3347 -12.0840 1.6946 35 1 1.5596 -13.2839 -0.4433 36 1 2.5978 -12.1707 -2.3776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787366495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:33 Heat of formation + Delta-G solvation = -110.027227 kcal Electronic energy + Delta-G solvation = -23343.635919 eV Core-core repulsion = 19382.104378 eV Total energy + Delta-G solvation = -3961.531540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.59898 -40.10549 -39.11730 -37.45373 -36.96049 -34.31020 -33.77097 -32.39043 -32.05851 -30.96652 -28.53221 -26.74532 -24.10469 -23.45708 -22.40505 -21.89421 -20.14033 -18.43641 -18.06802 -17.68270 -17.25958 -16.40373 -16.16546 -15.70418 -15.53135 -15.26155 -15.19054 -14.61703 -14.39971 -14.36263 -14.02928 -13.69938 -13.45426 -12.99554 -12.83845 -12.55392 -12.34636 -11.92314 -11.87379 -11.82210 -11.64286 -11.05661 -10.93143 -10.85076 -10.56651 -10.26632 -9.46439 -9.35101 -9.31973 -9.25608 -8.76925 -8.65047 -7.71556 -6.11774 -4.18034 0.41366 0.46636 1.52767 2.82022 3.27169 3.27787 3.34107 3.37726 3.62881 3.96004 4.02742 4.06984 4.26825 4.31247 4.37551 4.58692 4.68930 4.83614 4.97452 5.19453 5.24303 5.26092 5.39512 5.46945 5.63617 5.71352 5.82920 6.12005 6.82602 7.15788 7.27541 7.56093 7.59481 7.61485 7.94968 8.08555 8.80745 8.98642 9.37128 9.52069 10.98584 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.002598 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.531094 B =10773.780311 C =11213.505158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.728 5.728 11 C 0.694 3.306 12 O -0.602 6.602 13 N -0.751 5.751 14 C 0.118 3.882 15 C 0.133 3.867 16 H 0.126 0.874 17 O -0.549 6.549 18 C -0.141 4.141 19 C 0.123 3.877 20 F -0.126 7.126 21 C -0.145 4.145 22 C -0.076 4.076 23 C -0.117 4.117 24 C 0.001 3.999 25 Cl -0.044 7.044 26 H 0.265 0.735 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.387 0.613 30 H 0.396 0.604 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.379 0.621 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.059 -27.825 -1.352 29.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.380 5.380 11 C 0.393 3.607 12 O -0.481 6.481 13 N -0.409 5.409 14 C -0.008 4.008 15 C 0.073 3.927 16 H 0.143 0.857 17 O -0.358 6.358 18 C -0.144 4.144 19 C 0.103 3.897 20 F -0.104 7.104 21 C -0.164 4.164 22 C -0.095 4.095 23 C -0.136 4.136 24 C -0.026 4.026 25 Cl -0.015 7.015 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.219 0.781 30 H 0.230 0.770 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.231 0.769 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.277 -27.584 -1.818 28.586 hybrid contribution 0.792 1.038 0.425 1.373 sum 8.069 -26.546 -1.393 27.781 Atomic orbital electron populations 1.69982 1.06091 1.27224 1.49073 1.24947 0.94914 0.99396 0.94812 0.86409 0.79612 0.82662 0.78175 1.20498 1.21033 1.19766 1.21236 0.93291 0.90437 1.52951 0.91924 1.18979 0.87785 0.81059 0.97591 1.45699 1.10836 1.04309 1.77162 1.16120 0.85106 0.81059 0.78392 1.90872 1.14247 1.84270 1.58759 1.44941 1.09161 1.04318 1.82491 1.21625 0.94992 0.80993 1.03183 1.21164 0.94040 0.87648 0.89831 0.85660 1.86617 1.41650 1.92064 1.15517 1.20304 1.02787 0.98710 0.92597 1.17281 1.00006 0.91301 0.81123 1.91409 1.93604 1.80479 1.44911 1.21288 1.01884 0.93054 1.00130 1.21027 0.96897 1.00319 0.91222 1.21169 0.99074 0.92875 1.00508 1.20537 0.99688 0.93689 0.88695 1.98413 1.80915 1.80328 1.41835 0.92494 0.95754 0.95750 0.78084 0.77037 0.90804 0.91360 0.76928 0.83648 0.83675 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.04 9.28 -34.44 -0.32 -15.35 16 8 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 9 C 0.27 7.34 5.43 -5.19 -0.03 7.32 16 10 N -0.73 -16.21 5.55 -66.42 -0.37 -16.58 16 11 C 0.69 14.99 8.57 -86.92 -0.74 14.24 16 12 O -0.60 -15.60 16.34 5.28 0.09 -15.51 16 13 N -0.75 -12.04 5.51 -65.23 -0.36 -12.40 16 14 C 0.12 1.65 5.24 -4.04 -0.02 1.63 16 15 C 0.13 1.49 2.95 -27.88 -0.08 1.40 16 16 H 0.13 1.36 6.37 -51.93 -0.33 1.03 16 17 O -0.55 -6.42 13.18 -35.23 -0.46 -6.89 16 18 C -0.14 -1.39 4.97 -104.52 -0.52 -1.91 16 19 C 0.12 1.12 7.04 -39.42 -0.28 0.84 16 20 F -0.13 -1.23 14.11 2.25 0.03 -1.20 16 21 C -0.14 -0.96 10.03 -39.51 -0.40 -1.35 16 22 C -0.08 -0.40 10.04 -39.60 -0.40 -0.80 16 23 C -0.12 -0.75 9.83 -39.54 -0.39 -1.14 16 24 C 0.00 0.01 6.31 -39.51 -0.25 -0.24 16 25 Cl -0.04 -0.40 27.08 -51.86 -1.40 -1.80 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.39 7.41 8.34 -40.82 -0.34 7.07 16 30 H 0.40 5.37 8.49 -40.82 -0.35 5.02 16 31 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 32 H 0.07 1.02 7.77 -51.93 -0.40 0.62 16 33 H 0.38 3.95 6.34 45.56 0.29 4.24 16 34 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.15 0.33 8.06 -52.48 -0.42 -0.09 16 36 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -34.40 332.87 -8.47 -42.87 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -3.20 Total: 9.83 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -3.52 Total: 6.31 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.01 Total: -54.84 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.38 Total: -22.40 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.03 Total: -1.20 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.40 Total: -1.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.40 -8.47 -42.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787366495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.152 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds