Wall clock time and date at job start Tue Mar 31 2020 11:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48502 * 109.46841 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.46959 * 29.99798 * 3 2 1 6 6 H 1.48497 * 109.47400 * 150.00179 * 3 2 1 7 7 C 1.37874 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00142 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47301 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00538 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99608 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00700 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00365 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47345 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.47070 * 305.00306 * 15 14 13 17 17 O 1.42903 * 109.46923 * 65.00471 * 15 14 13 18 18 C 1.50701 * 109.47419 * 185.00232 * 15 14 13 19 19 C 1.38459 * 120.01787 * 284.73135 * 18 15 14 20 20 F 1.35097 * 120.01953 * 359.97062 * 19 18 15 21 21 C 1.38451 * 119.96224 * 179.74576 * 19 18 15 22 22 C 1.38227 * 119.99522 * 0.52340 * 21 19 18 23 23 C 1.38199 * 120.04352 * 359.72744 * 22 21 19 24 24 C 1.38289 * 120.01935 * 105.00205 * 18 15 14 25 25 Cl 1.73600 * 120.00036 * 359.97438 * 24 18 15 26 26 H 0.96995 * 119.99748 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47200 * 59.99841 * 9 7 2 28 28 H 1.08999 * 109.47131 * 299.99716 * 9 7 2 29 29 H 0.97008 * 119.99995 * 359.97438 * 10 9 7 30 30 H 0.97008 * 119.99832 * 0.02562 * 13 11 10 31 31 H 1.09008 * 109.47020 * 60.00160 * 14 13 11 32 32 H 1.08997 * 109.47417 * 300.00155 * 14 13 11 33 33 H 0.96700 * 114.00234 * 59.99815 * 17 15 14 34 34 H 1.07995 * 120.00318 * 180.25276 * 21 19 18 35 35 H 1.08005 * 119.97619 * 179.70605 * 22 21 19 36 36 H 1.07994 * 119.98364 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7539 -4.8833 -0.0019 12 8 0.5584 -5.1055 -0.0019 13 7 2.6296 -5.9078 -0.0022 14 6 2.1413 -7.2889 -0.0020 15 6 3.3313 -8.2506 -0.0031 16 1 3.9838 -8.0204 -0.8453 17 8 4.0605 -8.1074 1.2175 18 6 2.8323 -9.6672 -0.1268 19 6 2.2531 -10.2953 0.9628 20 9 2.1355 -9.6387 2.1376 21 6 1.7903 -11.5949 0.8463 22 6 1.9165 -12.2684 -0.3542 23 6 2.4993 -11.6434 -1.4402 24 6 2.9578 -10.3426 -1.3271 25 17 3.6896 -9.5583 -2.6920 26 1 -0.4849 0.8400 -0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8880 29 1 3.1568 -3.4354 -0.0010 30 1 3.5834 -5.7305 -0.0017 31 1 1.5355 -7.4602 -0.8919 32 1 1.5361 -7.4603 0.8881 33 1 3.5410 -8.2972 2.0107 34 1 1.3347 -12.0840 1.6946 35 1 1.5596 -13.2839 -0.4433 36 1 2.5978 -12.1707 -2.3776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787366495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:32 Heat of formation + Delta-G solvation = -136.731190 kcal Electronic energy + Delta-G solvation = -23344.793889 eV Core-core repulsion = 19382.104378 eV Total energy + Delta-G solvation = -3962.689511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.078 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.28313 -41.12490 -40.46292 -38.42984 -37.59503 -36.21433 -35.36703 -34.31926 -32.96104 -31.51794 -29.97036 -28.45553 -25.29706 -24.22496 -24.01278 -22.76214 -21.90073 -19.90697 -19.03636 -18.55112 -18.08844 -17.97144 -17.32980 -16.89205 -16.74461 -16.44758 -16.35143 -15.88051 -15.77905 -15.30256 -15.11313 -14.77969 -14.71252 -14.29276 -14.21811 -14.02863 -13.51997 -13.29787 -12.94916 -12.90278 -12.70660 -12.51500 -12.46205 -12.22430 -11.83468 -11.54269 -11.47826 -11.25036 -10.80789 -10.36669 -10.02952 -9.83100 -9.63925 -8.28380 -6.44824 -0.16884 -0.09889 0.89948 1.43349 1.46436 1.57319 1.77592 2.18889 2.30675 2.39667 3.02124 3.06498 3.18358 3.20570 3.51066 3.58200 3.68173 3.86542 4.02958 4.16432 4.33405 4.49024 4.62067 4.69879 4.98056 5.02386 5.06678 5.15574 5.26484 5.38331 5.48274 5.61162 5.65073 5.84405 6.20168 6.39496 6.66584 7.22974 7.27141 7.66972 8.84144 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.002598 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.531094 B =10773.780311 C =11213.505158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.721 5.721 11 C 0.692 3.308 12 O -0.648 6.648 13 N -0.727 5.727 14 C 0.118 3.882 15 C 0.146 3.854 16 H 0.130 0.870 17 O -0.557 6.557 18 C -0.162 4.162 19 C 0.101 3.899 20 F -0.136 7.136 21 C -0.143 4.143 22 C -0.062 4.062 23 C -0.115 4.115 24 C -0.012 4.012 25 Cl -0.054 7.054 26 H 0.269 0.731 27 H -0.013 1.013 28 H -0.014 1.014 29 H 0.405 0.595 30 H 0.412 0.588 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.383 0.617 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.825 -29.211 -1.580 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.593 4.593 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.375 5.375 11 C 0.392 3.608 12 O -0.531 6.531 13 N -0.385 5.385 14 C -0.007 4.007 15 C 0.086 3.914 16 H 0.147 0.853 17 O -0.367 6.367 18 C -0.165 4.165 19 C 0.081 3.919 20 F -0.115 7.115 21 C -0.161 4.161 22 C -0.080 4.080 23 C -0.133 4.133 24 C -0.039 4.039 25 Cl -0.024 7.024 26 H 0.078 0.922 27 H 0.005 0.995 28 H 0.004 0.996 29 H 0.240 0.760 30 H 0.248 0.752 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.236 0.764 34 H 0.185 0.815 35 H 0.202 0.798 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.123 -29.025 -2.043 30.493 hybrid contribution 0.194 1.298 0.496 1.403 sum 9.317 -27.727 -1.547 29.291 Atomic orbital electron populations 1.70144 1.08268 1.28593 1.49949 1.26073 0.95804 1.03880 0.93847 0.85128 0.78433 0.76851 0.78614 1.19541 1.20858 1.17999 1.21597 0.94310 0.90450 1.52931 0.89864 1.18428 0.88079 0.83261 0.94014 1.45298 1.10980 1.03699 1.77510 1.16268 0.85002 0.81597 0.77942 1.90838 1.16608 1.84965 1.60665 1.44708 1.09240 1.04029 1.80491 1.21771 0.96467 0.80120 1.02344 1.20969 0.92577 0.88104 0.89734 0.85306 1.86590 1.41961 1.92176 1.15924 1.20175 1.04639 0.97969 0.93712 1.17591 1.01097 0.92448 0.80723 1.91376 1.93798 1.80879 1.45410 1.21652 1.00957 0.91984 1.01552 1.21509 0.94974 1.01611 0.89915 1.21544 0.97944 0.91895 1.01939 1.20716 1.00447 0.94669 0.88021 1.98406 1.81171 1.80703 1.42162 0.92203 0.99547 0.99618 0.75974 0.75168 0.91517 0.92373 0.76404 0.81469 0.79836 0.81507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 43.09 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.56 -31.02 9.28 25.60 0.24 -30.78 16 8 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.29 16.33 5.43 85.63 0.46 16.80 16 10 N -0.72 -32.70 5.55 -482.31 -2.68 -35.38 16 11 C 0.69 30.67 8.57 179.06 1.53 32.20 16 12 O -0.65 -35.00 16.34 -4.01 -0.07 -35.06 16 13 N -0.73 -23.41 5.51 -478.54 -2.64 -26.04 16 14 C 0.12 3.37 5.24 86.38 0.45 3.83 16 15 C 0.15 3.23 2.95 29.85 0.09 3.32 16 16 H 0.13 2.73 6.37 -2.39 -0.02 2.72 16 17 O -0.56 -12.81 13.18 -148.98 -1.96 -14.78 16 18 C -0.16 -3.10 4.97 -19.80 -0.10 -3.20 16 19 C 0.10 1.75 7.04 22.37 0.16 1.91 16 20 F -0.14 -2.66 14.11 44.97 0.63 -2.03 16 21 C -0.14 -1.55 10.03 22.32 0.22 -1.32 16 22 C -0.06 -0.44 10.04 22.26 0.22 -0.21 16 23 C -0.11 -1.16 9.83 22.30 0.22 -0.94 16 24 C -0.01 -0.19 6.31 22.32 0.14 -0.04 16 25 Cl -0.05 -0.92 27.08 -2.72 -0.07 -0.99 16 26 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 27 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 28 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 29 H 0.40 15.28 8.34 -92.70 -0.77 14.51 16 30 H 0.41 10.82 8.49 -92.70 -0.79 10.03 16 31 H 0.07 2.02 8.14 -2.38 -0.02 2.01 16 32 H 0.06 1.80 7.77 -2.39 -0.02 1.78 16 33 H 0.38 8.00 6.34 -74.06 -0.47 7.54 16 34 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 35 H 0.18 -0.11 8.06 -2.91 -0.02 -0.13 16 36 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -77.22 332.87 -1.23 -78.45 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.86 Total: 25.37 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: 4.11 Total: 22.22 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -5.03 Total: -118.30 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -2.03 Total: -49.84 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.63 Total: -2.03 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.07 Total: -0.99 kcal Total: -77.22 -1.23 -78.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787366495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.282 kcal (2) G-P(sol) polarization free energy of solvation -77.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds