Wall clock time and date at job start Tue Mar 31 2020 10:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46951 * 138.19875 * 3 2 1 5 5 C 1.36932 * 120.00352 * 96.10646 * 4 3 2 6 6 H 1.08005 * 120.00197 * 222.01693 * 5 4 3 7 7 C 1.38979 * 120.00189 * 42.28991 * 5 4 3 8 8 N 1.31407 * 120.00204 * 210.81916 * 7 5 4 9 9 Si 1.86801 * 119.99798 * 30.82051 * 7 5 4 10 10 H 1.48501 * 109.47265 * 85.75191 * 9 7 5 11 11 H 1.48500 * 109.47207 * 205.75219 * 9 7 5 12 12 H 1.48498 * 109.46900 * 325.74682 * 9 7 5 13 13 C 1.34781 * 119.99979 * 276.10481 * 4 3 2 14 14 O 1.21656 * 119.99639 * 355.27089 * 13 4 3 15 15 C 1.47343 * 120.00174 * 175.26768 * 13 4 3 16 16 N 1.35849 * 126.34749 * 2.85442 * 15 13 4 17 17 C 1.31238 * 108.38127 * 179.97438 * 16 15 13 18 18 C 1.47026 * 125.51748 * 179.97438 * 17 16 15 19 19 C 1.36170 * 125.33376 * 185.10356 * 18 17 16 20 20 C 1.37706 * 114.44940 * 179.97438 * 19 18 17 21 21 C 1.33736 * 115.19325 * 0.02562 * 20 19 18 22 22 S 1.75826 * 109.95467 * 359.73504 * 21 20 19 23 23 O 1.34587 * 108.95971 * 359.97438 * 17 16 15 24 24 C 1.34372 * 108.18384 * 359.76925 * 23 17 16 25 25 C 1.50698 * 126.41860 * 180.22717 * 24 23 17 26 26 H 4.40643 * 5.51418 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.47692 * 18.19561 * 3 2 1 28 28 H 1.09007 * 109.47200 * 258.19166 * 3 2 1 29 29 H 0.96997 * 120.00422 * 185.01024 * 8 7 5 30 30 H 1.07999 * 122.77821 * 0.03760 * 19 18 17 31 31 H 1.08000 * 122.39915 * 180.02562 * 20 19 18 32 32 H 1.07997 * 125.01818 * 179.97438 * 21 20 19 33 33 H 1.08998 * 109.46902 * 270.16719 * 25 24 23 34 34 H 1.09002 * 109.46694 * 30.16448 * 25 24 23 35 35 H 1.08995 * 109.47350 * 150.16576 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0305 -0.9207 5 6 3.4804 2.2665 -0.4440 6 1 3.1958 3.1547 -0.9886 7 6 4.2034 2.3779 0.7377 8 7 4.0395 3.4270 1.5119 9 14 5.4084 1.0364 1.2253 10 1 6.7222 1.2936 0.5827 11 1 5.5720 1.0306 2.7013 12 1 4.8888 -0.2814 0.7798 13 6 3.2415 0.7615 -2.2369 14 8 3.0163 -0.3609 -2.6487 15 6 3.6320 1.8266 -3.1771 16 7 3.9642 3.1037 -2.8542 17 6 4.2516 3.7489 -3.9603 18 6 4.6594 5.1589 -4.0453 19 6 4.8618 5.8519 -5.1999 20 6 5.2401 7.1635 -5.0185 21 6 5.3505 7.5530 -3.7439 22 16 4.9552 6.2168 -2.6716 23 8 4.1125 2.9107 -5.0041 24 6 3.7332 1.7115 -4.5314 25 6 3.4659 0.4724 -5.3463 26 1 -1.0502 -0.0001 0.0004 27 1 3.0099 -0.9754 -0.3209 28 1 3.0093 0.2111 1.0060 29 1 4.5954 3.5409 2.2986 30 1 4.7350 5.4098 -6.1770 31 1 5.4336 7.8297 -5.8462 32 1 5.6362 8.5432 -3.4210 33 1 2.4163 0.4498 -5.6394 34 1 4.0922 0.4821 -6.2383 35 1 3.6958 -0.4109 -4.7505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798805513.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:17 Heat of formation + Delta-G solvation = 85.856073 kcal Electronic energy + Delta-G solvation = -23414.052073 eV Core-core repulsion = 19893.827601 eV Total energy + Delta-G solvation = -3520.224472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.30202 -40.61914 -38.60690 -37.14770 -35.85335 -34.43743 -33.65983 -33.41641 -30.98425 -29.11555 -27.73238 -26.71427 -25.27846 -24.07573 -22.70363 -21.45408 -20.47227 -19.69826 -19.09046 -18.48724 -17.99303 -17.74059 -17.25014 -16.78997 -16.24734 -16.13997 -15.82592 -14.92641 -14.82708 -14.76297 -14.51485 -14.27325 -14.23282 -13.77457 -13.73218 -13.62118 -13.39301 -13.17181 -12.87990 -12.76941 -12.30702 -12.04175 -11.64871 -11.57577 -11.29487 -11.18836 -11.06666 -10.64782 -10.58425 -9.76812 -9.55119 -9.10902 -8.51975 -6.02794 -0.58009 0.24659 0.32571 1.08206 1.14346 1.23943 1.34068 1.38816 1.57951 1.66380 1.88178 1.92096 2.23014 2.36370 2.62331 2.86269 3.06174 3.59574 3.69439 3.95771 4.16497 4.24001 4.34317 4.35817 4.48200 4.54217 4.61073 4.61734 4.87142 4.95503 5.05070 5.07537 5.17431 5.27330 5.38519 5.46490 6.08714 6.46097 6.51964 6.69241 6.98555 7.33791 7.63256 8.62230 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.005563 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.435412 B = 5032.366311 C = 6381.745742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.231 4.231 3 C 0.212 3.788 4 N -0.449 5.449 5 C -0.335 4.335 6 H 0.105 0.895 7 C 0.045 3.955 8 N -0.872 5.872 9 Si 0.887 3.113 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.245 1.245 13 C 0.547 3.453 14 O -0.595 6.595 15 C -0.071 4.071 16 N -0.434 5.434 17 C 0.230 3.770 18 C -0.167 4.167 19 C -0.082 4.082 20 C -0.138 4.138 21 C -0.196 4.196 22 S 0.158 5.842 23 O -0.186 6.186 24 C 0.029 3.971 25 C -0.062 4.062 26 H 0.258 0.742 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.278 0.722 30 H 0.165 0.835 31 H 0.186 0.814 32 H 0.204 0.796 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.568 5.064 -12.729 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.232 4.232 3 C 0.091 3.909 4 N -0.167 5.167 5 C -0.463 4.463 6 H 0.123 0.877 7 C -0.160 4.160 8 N -0.508 5.508 9 Si 0.710 3.290 10 H -0.211 1.211 11 H -0.194 1.194 12 H -0.168 1.168 13 C 0.338 3.662 14 O -0.481 6.481 15 C -0.192 4.192 16 N -0.163 5.163 17 C 0.024 3.976 18 C -0.286 4.286 19 C -0.118 4.118 20 C -0.167 4.167 21 C -0.333 4.333 22 S 0.423 5.577 23 O -0.074 6.074 24 C -0.028 4.028 25 C -0.118 4.118 26 H 0.274 0.726 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.182 0.818 31 H 0.203 0.797 32 H 0.221 0.779 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.427 4.689 -10.450 11.542 hybrid contribution 0.612 -0.455 -1.196 1.419 sum 2.039 4.234 -11.646 12.559 Atomic orbital electron populations 1.25706 0.96514 0.99080 0.98948 1.23934 0.95551 1.01766 1.01988 1.18694 0.84770 0.92910 0.94565 1.43610 1.54989 1.13002 1.05071 1.19396 1.36015 0.83641 1.07206 0.87748 1.25726 0.97600 0.98242 0.94459 1.69996 1.35694 1.32250 1.12819 0.86791 0.81443 0.82703 0.78102 1.21061 1.19401 1.16837 1.17236 0.80501 0.85735 0.82717 1.90591 1.57207 1.21852 1.78448 1.21495 1.11512 0.92968 0.93272 1.71842 1.13983 1.04538 1.25902 1.23102 1.02409 0.92269 0.79844 1.21586 1.16575 0.90534 0.99876 1.21020 0.98517 0.94559 0.97684 1.20310 1.03086 0.95226 0.98093 1.26551 1.06584 1.03689 0.96452 1.85429 1.63813 1.01228 1.07190 1.84313 1.66532 1.19098 1.37492 1.24343 0.98485 0.86822 0.93183 1.20642 1.04456 0.87569 0.99102 0.72576 0.88761 0.89101 0.91188 0.81768 0.79656 0.77897 0.87896 0.87191 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.75 19.25 74.32 1.43 -5.32 16 2 C -0.23 -10.23 13.61 31.13 0.42 -9.81 16 3 C 0.21 10.02 4.02 84.57 0.34 10.36 16 4 N -0.45 -23.50 2.02 -649.20 -1.31 -24.81 16 5 C -0.34 -19.00 8.30 84.07 0.70 -18.30 16 6 H 0.11 6.49 5.94 -2.91 -0.02 6.47 16 7 C 0.05 2.51 5.02 84.93 0.43 2.94 16 8 N -0.87 -49.82 13.95 21.67 0.30 -49.51 16 9 Si 0.89 42.12 26.63 68.60 1.83 43.94 16 10 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.24 -11.03 5.68 99.48 0.56 -10.46 16 13 C 0.55 27.77 7.56 86.64 0.65 28.42 16 14 O -0.59 -29.48 14.41 -4.21 -0.06 -29.54 16 15 C -0.07 -3.37 6.71 40.46 0.27 -3.09 16 16 N -0.43 -21.03 8.09 -294.55 -2.38 -23.41 16 17 C 0.23 9.31 8.05 87.09 0.70 10.01 16 18 C -0.17 -5.60 6.46 24.09 0.16 -5.44 16 19 C -0.08 -1.97 10.14 21.66 0.22 -1.75 16 20 C -0.14 -2.49 10.15 21.12 0.21 -2.28 16 21 C -0.20 -3.91 11.21 66.80 0.75 -3.16 16 22 S 0.16 5.05 23.30 -56.49 -1.32 3.73 16 23 O -0.19 -6.79 10.73 -5.95 -0.06 -6.86 16 24 C 0.03 1.10 7.44 25.23 0.19 1.29 16 25 C -0.06 -1.71 9.90 71.24 0.71 -1.01 16 26 H 0.26 6.39 7.80 -4.41 -0.03 6.35 16 27 H 0.09 4.24 7.52 -2.39 -0.02 4.22 16 28 H 0.09 4.25 5.01 -2.38 -0.01 4.24 16 29 H 0.28 14.73 8.32 -92.71 -0.77 13.96 16 30 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 31 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.10 3.12 6.41 -2.39 -0.02 3.10 16 Total: -1.00 -73.27 328.29 5.17 -68.10 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 1.00 Total: 15.49 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 7.18 Total: 2.86 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -3.39 Total: -97.74 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.12 Total: -36.39 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.83 Total: 43.94 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -1.32 Total: 3.73 kcal Total: -73.27 5.17 -68.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805513.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.956 kcal (2) G-P(sol) polarization free energy of solvation -73.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds