Wall clock time and date at job start Tue Mar 31 2020 11:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47066 * 2 1 4 4 N 1.30824 * 122.99037 * 90.02368 * 3 2 1 5 5 C 1.30262 * 117.27692 * 179.97438 * 4 3 2 6 6 N 1.37805 * 124.73992 * 180.02562 * 5 4 3 7 7 S 1.70920 * 110.51934 * 0.26794 * 5 4 3 8 8 C 1.36826 * 122.99857 * 270.02575 * 3 2 1 9 9 C 1.41734 * 126.11323 * 0.02562 * 8 3 2 10 10 O 1.21686 * 120.00312 * 359.97438 * 9 8 3 11 11 O 1.34950 * 120.00379 * 179.97438 * 9 8 3 12 12 C 1.42902 * 117.00559 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47132 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46750 * 179.97438 * 13 12 11 15 15 S 1.81003 * 109.46823 * 179.97438 * 14 13 12 16 16 C 1.76204 * 99.99872 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99857 * 0.02562 * 16 15 14 18 18 C 1.38797 * 119.99726 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00223 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99678 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46761 * 90.00281 * 20 18 16 22 22 H 1.48501 * 109.47139 * 209.99837 * 20 18 16 23 23 H 1.48498 * 109.47167 * 330.00470 * 20 18 16 24 24 H 1.08996 * 109.46877 * 299.99555 * 1 2 3 25 25 H 1.09000 * 109.46756 * 59.99875 * 1 2 3 26 26 H 1.08996 * 109.46663 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47396 * 240.00816 * 2 1 3 28 28 H 1.08992 * 109.47427 * 120.00636 * 2 1 3 29 29 H 0.96999 * 120.00004 * 0.02562 * 6 5 4 30 30 H 0.97005 * 119.99887 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.46712 * 299.99432 * 12 11 9 32 32 H 1.08998 * 109.46869 * 59.99544 * 12 11 9 33 33 H 1.09001 * 109.46789 * 299.99301 * 13 12 11 34 34 H 1.08999 * 109.47084 * 59.99499 * 13 12 11 35 35 H 1.08993 * 109.47151 * 299.99574 * 14 13 12 36 36 H 1.08999 * 109.47637 * 59.99959 * 14 13 12 37 37 H 0.97001 * 119.99590 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2702 2.0923 1.0973 5 6 2.7027 3.3141 0.9676 6 7 3.0017 4.1568 2.0162 7 16 2.8411 3.7285 -0.6848 8 6 2.2803 2.1236 -1.1475 9 6 2.1108 1.6475 -2.4717 10 8 1.7102 0.5147 -2.6645 11 8 2.3936 2.4503 -3.5189 12 6 2.1992 1.9053 -4.8255 13 6 2.5698 2.9543 -5.8759 14 6 2.3622 2.3704 -7.2748 15 16 2.7999 3.6115 -8.5175 16 6 2.4766 2.6982 -9.9893 17 1 2.1171 1.6817 -9.9259 18 6 2.6828 3.2854 -11.2298 19 7 3.1203 4.5244 -11.3070 20 14 2.3406 2.3168 -12.7901 21 1 0.9295 2.5255 -13.2028 22 1 3.2464 2.7829 -13.8707 23 1 2.5739 0.8723 -12.5371 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 2.8943 3.8505 2.9303 30 1 3.3196 5.0562 1.8402 31 1 2.8323 1.0269 -4.9506 32 1 1.1543 1.6206 -4.9486 33 1 1.9370 3.8329 -5.7510 34 1 3.6148 3.2385 -5.7526 35 1 2.9952 1.4920 -7.3995 36 1 1.3173 2.0858 -7.3985 37 1 3.2648 4.9346 -12.1740 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805510736.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:18 Heat of formation + Delta-G solvation = -82.520925 kcal Electronic energy + Delta-G solvation = -20586.567431 eV Core-core repulsion = 17194.485536 eV Total energy + Delta-G solvation = -3392.081895 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86774 -40.77735 -37.94821 -36.29602 -34.89270 -34.57670 -33.60464 -31.01916 -28.17392 -27.48692 -26.42590 -24.03208 -23.48861 -22.67290 -20.99642 -19.74841 -19.53706 -18.45310 -18.15732 -17.85986 -17.16356 -16.89442 -16.50610 -16.35867 -15.93966 -15.69699 -15.24860 -14.99349 -14.77801 -14.19401 -14.13147 -13.81184 -13.58579 -13.15118 -13.00209 -12.94596 -12.63247 -12.47800 -12.38870 -12.32263 -11.94482 -11.80927 -11.59138 -11.46030 -11.35371 -11.14502 -10.86718 -10.45352 -10.35906 -9.03232 -8.67766 -8.37702 -6.14196 -0.77225 -0.09643 0.51854 1.25534 1.29013 1.40188 1.45815 1.55656 1.91875 1.93337 2.23581 2.28008 2.96801 3.29739 3.46097 3.78479 3.85962 3.97985 4.01080 4.20247 4.34391 4.35797 4.39170 4.43452 4.60667 4.69024 4.91951 5.01484 5.02089 5.09166 5.17365 5.28057 5.40449 5.48820 5.74698 6.14026 6.18345 6.68584 6.79820 7.04771 8.71681 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.027662 B = 0.002228 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.974935 B =12565.312032 C =13466.290784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 C 0.237 3.763 4 N -0.574 5.574 5 C 0.335 3.665 6 N -0.773 5.773 7 S 0.204 5.796 8 C -0.388 4.388 9 C 0.549 3.451 10 O -0.527 6.527 11 O -0.356 6.356 12 C 0.082 3.918 13 C -0.085 4.085 14 C -0.090 4.090 15 S -0.185 6.185 16 C -0.540 4.540 17 H 0.074 0.926 18 C 0.015 3.985 19 N -0.907 5.907 20 Si 0.995 3.005 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.264 1.264 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.426 0.574 30 H 0.435 0.565 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -2.152 30.013 30.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.107 4.107 3 C 0.093 3.907 4 N -0.301 5.301 5 C -0.036 4.036 6 N -0.325 5.325 7 S 0.454 5.546 8 C -0.512 4.512 9 C 0.398 3.602 10 O -0.420 6.420 11 O -0.273 6.273 12 C 0.006 3.994 13 C -0.123 4.123 14 C -0.239 4.239 15 S 0.043 5.957 16 C -0.687 4.687 17 H 0.092 0.908 18 C -0.190 4.190 19 N -0.543 5.543 20 Si 0.816 3.184 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.188 1.188 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.260 0.740 30 H 0.270 0.730 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.604 -0.399 29.967 29.975 hybrid contribution -0.755 -2.206 -1.089 2.573 sum -1.359 -2.604 28.878 29.027 Atomic orbital electron populations 1.21540 0.92829 1.03147 1.01281 1.20560 0.97472 0.87894 1.04761 1.20838 0.88490 0.97202 0.84136 1.66199 1.26693 1.06129 1.31055 1.24141 0.92844 0.91393 0.95229 1.41677 1.69701 1.15216 1.05874 1.84145 1.64128 1.10634 0.95645 1.23031 1.31085 1.01703 0.95338 1.18234 0.74332 0.83157 0.84527 1.90828 1.45209 1.19815 1.86121 1.86132 1.79710 1.45567 1.15889 1.22619 1.02105 0.96792 0.77839 1.21105 1.03548 0.97990 0.89683 1.23056 1.03367 1.01158 0.96338 1.84619 1.87839 1.23074 1.00146 1.23049 1.51806 1.01741 0.92132 0.90789 1.26067 0.94051 0.96281 1.02576 1.70147 1.43657 1.13956 1.26532 0.85007 0.78531 0.78385 0.76432 1.19275 1.19879 1.18778 0.92165 0.94143 0.90140 0.88893 0.88520 0.73958 0.73019 0.91036 0.91042 0.90325 0.90322 0.91331 0.91318 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.90 71.98 0.71 -1.69 16 2 C -0.07 -1.37 5.72 29.85 0.17 -1.20 16 3 C 0.24 5.33 6.08 42.38 0.26 5.59 16 4 N -0.57 -11.20 10.53 -188.48 -1.99 -13.19 16 5 C 0.33 4.85 8.53 179.43 1.53 6.37 16 6 N -0.77 -3.81 9.04 -59.97 -0.54 -4.35 16 7 S 0.20 3.55 22.99 -56.49 -1.30 2.26 16 8 C -0.39 -9.52 6.32 22.80 0.14 -9.37 16 9 C 0.55 16.01 7.73 68.68 0.53 16.54 16 10 O -0.53 -16.84 13.93 19.23 0.27 -16.57 16 11 O -0.36 -10.54 9.91 -58.67 -0.58 -11.12 16 12 C 0.08 2.45 5.38 71.98 0.39 2.84 16 13 C -0.08 -2.80 5.59 30.59 0.17 -2.63 16 14 C -0.09 -3.64 5.67 71.98 0.41 -3.23 16 15 S -0.19 -9.87 21.44 -56.49 -1.21 -11.08 16 16 C -0.54 -31.23 9.50 67.95 0.65 -30.58 16 17 H 0.07 4.12 7.80 -2.91 -0.02 4.10 16 18 C 0.02 0.87 5.49 84.86 0.47 1.34 16 19 N -0.91 -54.69 13.22 21.65 0.29 -54.41 16 20 Si 0.99 44.07 29.55 68.60 2.03 46.10 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 2.19 5.99 -2.39 -0.01 2.18 16 28 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.43 0.86 8.95 -92.71 -0.83 0.03 16 30 H 0.43 -0.29 8.95 -92.70 -0.83 -1.12 16 31 H 0.07 2.09 8.13 -2.39 -0.02 2.07 16 32 H 0.07 2.09 8.13 -2.39 -0.02 2.07 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 36 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -73.45 349.23 1.85 -71.60 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -0.54 Total: 6.78 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 5.42 Total: -16.03 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -2.24 Total: -71.95 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.31 Total: -27.69 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -6.31 SS G_CDS: -2.51 Total: -8.82 kcal Total: -73.45 1.85 -71.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805510736.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.917 kcal (2) G-P(sol) polarization free energy of solvation -73.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds