Wall clock time and date at job start Tue Mar 31 2020 10:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.37754 * 125.89526 * 216.20023 * 3 2 1 5 5 C 1.39928 * 106.80184 * 180.02562 * 4 3 2 6 6 C 1.36658 * 107.01036 * 359.97438 * 5 4 3 7 7 C 1.46975 * 125.71231 * 179.97438 * 6 5 4 8 8 O 1.21676 * 119.99619 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00708 * 179.97438 * 7 6 5 10 10 C 1.39950 * 120.00267 * 184.38291 * 9 7 6 11 11 C 1.38747 * 120.08172 * 325.37691 * 10 9 7 12 12 C 1.38177 * 120.01772 * 180.30062 * 11 10 9 13 13 C 1.38560 * 120.18180 * 359.44718 * 12 11 10 14 14 F 1.35091 * 119.92153 * 180.30073 * 13 12 11 15 15 C 1.38347 * 120.15849 * 0.55618 * 13 12 11 16 16 C 1.38740 * 119.98332 * 359.72148 * 15 13 12 17 17 O 1.35766 * 120.09257 * 180.02562 * 16 15 13 18 18 C 1.34798 * 116.99813 * 5.42334 * 17 16 15 19 19 H 1.07999 * 120.00620 * 354.95563 * 18 17 16 20 20 C 1.38645 * 119.99864 * 174.95741 * 18 17 16 21 21 N 1.31568 * 119.99743 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47164 * 89.99927 * 22 20 18 24 24 H 1.48502 * 109.46734 * 209.99889 * 22 20 18 25 25 H 1.48498 * 109.47088 * 329.99220 * 22 20 18 26 26 O 1.34564 * 125.90349 * 36.50905 * 3 2 1 27 27 H 1.07998 * 126.59700 * 359.97438 * 4 3 2 28 28 H 1.07996 * 126.49411 * 179.97438 * 5 4 3 29 29 H 0.97004 * 119.99327 * 4.38589 * 9 7 6 30 30 H 1.08000 * 119.99067 * 0.02690 * 11 10 9 31 31 H 1.07999 * 119.90965 * 179.70416 * 12 11 10 32 32 H 1.07997 * 120.01194 * 179.74370 * 15 13 12 33 33 H 0.97003 * 120.00121 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3752 0.9015 0.6591 5 6 4.6977 0.5331 0.3883 6 6 4.6485 -0.5691 -0.4181 7 6 5.8102 -1.2949 -0.9509 8 8 6.9365 -0.9228 -0.6798 9 7 5.6280 -2.3731 -1.7389 10 6 6.7309 -3.1183 -2.1711 11 6 7.9334 -2.4840 -2.4483 12 6 9.0197 -3.2204 -2.8809 13 6 8.9158 -4.5942 -3.0283 14 9 9.9830 -5.3097 -3.4457 15 6 7.7204 -5.2343 -2.7540 16 6 6.6238 -4.5008 -2.3247 17 8 5.4497 -5.1268 -2.0544 18 6 5.4463 -6.4734 -2.1144 19 1 6.3275 -7.0015 -2.4474 20 6 4.3112 -7.1807 -1.7487 21 7 3.2374 -6.5374 -1.3436 22 14 4.3066 -9.0468 -1.8312 23 1 4.7678 -9.6009 -0.5329 24 1 2.9297 -9.5264 -2.1129 25 1 5.2185 -9.4967 -2.9135 26 8 3.3574 -0.8751 -0.6485 27 1 3.0499 1.7327 1.2671 28 1 5.5884 1.0263 0.7483 29 1 4.7324 -2.6324 -2.0064 30 1 8.0191 -1.4140 -2.3302 31 1 9.9534 -2.7242 -3.1008 32 1 7.6410 -6.3047 -2.8736 33 1 2.4431 -7.0321 -1.0881 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814120965.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:56 Heat of formation + Delta-G solvation = -20.415132 kcal Electronic energy + Delta-G solvation = -24588.966917 eV Core-core repulsion = 20497.921004 eV Total energy + Delta-G solvation = -4091.045913 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.069 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.35220 -43.03288 -40.19120 -38.67411 -36.90788 -36.45758 -34.46946 -33.42534 -32.49380 -30.90781 -29.53071 -28.46454 -25.64110 -24.84822 -22.79895 -22.22045 -21.57783 -20.45993 -19.71713 -18.45412 -18.34452 -17.55962 -16.86451 -16.76402 -15.53276 -15.33222 -15.14084 -14.89487 -14.56849 -14.46250 -14.32045 -13.83810 -13.71261 -13.62666 -13.56062 -13.52478 -13.37604 -13.20101 -12.66476 -12.46465 -12.29238 -11.76920 -11.46665 -11.06916 -10.86297 -10.58574 -10.41385 -10.20657 -9.92622 -9.64589 -9.03701 -8.99802 -8.02215 -7.27541 -6.67229 -4.25781 0.33440 1.52606 1.60459 1.86017 2.01191 2.61638 2.97918 3.02255 3.02826 3.04521 3.08892 3.18715 3.76600 3.80864 4.21346 4.43586 4.64362 4.73846 4.88998 5.01520 5.15739 5.23888 5.43875 5.48994 5.64916 5.88594 5.91191 6.01991 6.33319 6.43735 6.64409 6.79875 6.81262 6.84157 6.98433 7.09233 7.49415 7.60280 7.75158 8.13236 8.77709 9.35976 10.49058 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.004670 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.871170 B = 5994.257745 C = 8705.127923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C 0.290 3.710 3 C 0.064 3.936 4 C -0.130 4.130 5 C -0.131 4.131 6 C -0.018 4.018 7 C 0.593 3.407 8 O -0.507 6.507 9 N -0.629 5.629 10 C 0.047 3.953 11 C -0.044 4.044 12 C -0.232 4.232 13 C 0.138 3.862 14 F -0.149 7.149 15 C -0.260 4.260 16 C 0.164 3.836 17 O -0.164 6.164 18 C -0.395 4.395 19 H 0.096 0.904 20 C 0.044 3.956 21 N -0.854 5.854 22 Si 0.943 3.057 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.265 1.265 26 O -0.136 6.136 27 H 0.172 0.828 28 H 0.175 0.825 29 H 0.421 0.579 30 H 0.143 0.857 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 11.420 1.470 11.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.049 5.049 2 C -0.026 4.026 3 C 0.009 3.991 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.073 4.073 7 C 0.379 3.621 8 O -0.385 6.385 9 N -0.272 5.272 10 C -0.047 4.047 11 C -0.064 4.064 12 C -0.252 4.252 13 C 0.118 3.882 14 F -0.128 7.128 15 C -0.281 4.281 16 C 0.107 3.893 17 O -0.067 6.067 18 C -0.470 4.470 19 H 0.114 0.886 20 C -0.162 4.162 21 N -0.487 5.487 22 Si 0.768 3.232 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.190 1.190 26 O -0.029 6.029 27 H 0.189 0.811 28 H 0.192 0.808 29 H 0.258 0.742 30 H 0.161 0.839 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.170 11.382 1.596 11.553 hybrid contribution 0.144 -1.321 -0.141 1.336 sum 1.314 10.061 1.455 10.250 Atomic orbital electron populations 1.81347 1.10453 1.06029 1.07024 1.23473 0.89520 0.94924 0.94671 1.16902 0.84553 0.94761 1.02851 1.22131 0.91466 1.00308 1.01398 1.21890 0.98604 0.95788 0.98872 1.22473 0.81112 0.99569 1.04165 1.16566 0.85870 0.80821 0.78832 1.90862 1.21189 1.66775 1.59667 1.42968 1.10559 1.26505 1.47176 1.16786 0.89251 0.87456 1.11237 1.20644 0.90348 1.00155 0.95266 1.20476 1.00452 0.91823 1.12466 1.17491 0.83217 0.89400 0.98094 1.91420 1.54912 1.78681 1.87801 1.20864 0.92327 1.01894 1.12970 1.18764 0.86865 0.89662 0.94024 1.83913 1.25271 1.22420 1.75068 1.21371 1.01396 0.77578 1.46669 0.88631 1.25322 0.94333 1.00851 0.95653 1.70012 1.02712 1.36659 1.39362 0.85663 0.78320 0.80028 0.79239 1.19657 1.20101 1.18952 1.84188 1.15966 1.46137 1.56595 0.81085 0.80770 0.74191 0.83939 0.85688 0.83786 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -5.02 18.54 41.84 0.78 -4.24 16 2 C 0.29 3.43 15.89 -22.48 -0.36 3.07 16 3 C 0.06 0.70 7.10 -37.84 -0.27 0.43 16 4 C -0.13 -1.09 10.86 -39.13 -0.42 -1.51 16 5 C -0.13 -1.30 10.58 -39.52 -0.42 -1.72 16 6 C -0.02 -0.23 7.12 -36.62 -0.26 -0.49 16 7 C 0.59 9.39 7.64 -12.72 -0.10 9.30 16 8 O -0.51 -8.71 14.27 5.21 0.07 -8.64 16 9 N -0.63 -11.01 5.18 -10.82 -0.06 -11.07 16 10 C 0.05 0.90 6.33 -83.49 -0.53 0.38 16 11 C -0.04 -0.77 8.69 -39.42 -0.34 -1.12 16 12 C -0.23 -3.98 10.02 -39.48 -0.40 -4.37 16 13 C 0.14 2.59 7.29 -39.42 -0.29 2.30 16 14 F -0.15 -2.70 17.26 2.25 0.04 -2.66 16 15 C -0.26 -5.38 9.14 -39.36 -0.36 -5.74 16 16 C 0.16 3.59 6.67 -38.92 -0.26 3.34 16 17 O -0.16 -4.16 9.31 0.09 0.00 -4.16 16 18 C -0.39 -10.13 9.49 30.88 0.29 -9.84 16 19 H 0.10 2.29 5.20 -52.49 -0.27 2.02 16 20 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 21 N -0.85 -23.12 13.67 55.48 0.76 -22.36 16 22 Si 0.94 19.36 29.55 -169.99 -5.02 14.34 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 26 O -0.14 -1.80 10.41 4.00 0.04 -1.76 16 27 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 28 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.42 7.28 8.32 -40.82 -0.34 6.94 16 30 H 0.14 2.33 6.19 -52.49 -0.32 2.01 16 31 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.14 2.99 5.64 -52.49 -0.30 2.70 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -28.82 319.64 -4.01 -32.83 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -1.64 Total: 7.86 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -3.80 Total: -4.94 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 1.48 Total: -37.68 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.12 Total: -14.56 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.82 -4.01 -32.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814120965.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.416 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds