Wall clock time and date at job start Tue Mar 31 2020 10:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.37754 * 125.89526 * 216.20023 * 3 2 1 5 5 C 1.39928 * 106.80184 * 180.02562 * 4 3 2 6 6 C 1.36658 * 107.01036 * 359.97438 * 5 4 3 7 7 C 1.46975 * 125.71231 * 179.97438 * 6 5 4 8 8 O 1.21676 * 119.99619 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00708 * 179.97438 * 7 6 5 10 10 C 1.39950 * 120.00267 * 184.38291 * 9 7 6 11 11 C 1.38747 * 120.08172 * 325.37691 * 10 9 7 12 12 C 1.38177 * 120.01772 * 180.30062 * 11 10 9 13 13 C 1.38560 * 120.18180 * 359.44718 * 12 11 10 14 14 F 1.35091 * 119.92153 * 180.30073 * 13 12 11 15 15 C 1.38347 * 120.15849 * 0.55618 * 13 12 11 16 16 C 1.38740 * 119.98332 * 359.72148 * 15 13 12 17 17 O 1.35766 * 120.09257 * 180.02562 * 16 15 13 18 18 C 1.34798 * 116.99813 * 5.42334 * 17 16 15 19 19 H 1.07999 * 120.00620 * 354.95563 * 18 17 16 20 20 C 1.38645 * 119.99864 * 174.95741 * 18 17 16 21 21 N 1.31568 * 119.99743 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47164 * 89.99927 * 22 20 18 24 24 H 1.48502 * 109.46734 * 209.99889 * 22 20 18 25 25 H 1.48498 * 109.47088 * 329.99220 * 22 20 18 26 26 O 1.34564 * 125.90349 * 36.50905 * 3 2 1 27 27 H 1.07998 * 126.59700 * 359.97438 * 4 3 2 28 28 H 1.07996 * 126.49411 * 179.97438 * 5 4 3 29 29 H 0.97004 * 119.99327 * 4.38589 * 9 7 6 30 30 H 1.08000 * 119.99067 * 0.02690 * 11 10 9 31 31 H 1.07999 * 119.90965 * 179.70416 * 12 11 10 32 32 H 1.07997 * 120.01194 * 179.74370 * 15 13 12 33 33 H 0.97003 * 120.00121 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3752 0.9015 0.6591 5 6 4.6977 0.5331 0.3883 6 6 4.6485 -0.5691 -0.4181 7 6 5.8102 -1.2949 -0.9509 8 8 6.9365 -0.9228 -0.6798 9 7 5.6280 -2.3731 -1.7389 10 6 6.7309 -3.1183 -2.1711 11 6 7.9334 -2.4840 -2.4483 12 6 9.0197 -3.2204 -2.8809 13 6 8.9158 -4.5942 -3.0283 14 9 9.9830 -5.3097 -3.4457 15 6 7.7204 -5.2343 -2.7540 16 6 6.6238 -4.5008 -2.3247 17 8 5.4497 -5.1268 -2.0544 18 6 5.4463 -6.4734 -2.1144 19 1 6.3275 -7.0015 -2.4474 20 6 4.3112 -7.1807 -1.7487 21 7 3.2374 -6.5374 -1.3436 22 14 4.3066 -9.0468 -1.8312 23 1 4.7678 -9.6009 -0.5329 24 1 2.9297 -9.5264 -2.1129 25 1 5.2185 -9.4967 -2.9135 26 8 3.3574 -0.8751 -0.6485 27 1 3.0499 1.7327 1.2671 28 1 5.5884 1.0263 0.7483 29 1 4.7324 -2.6324 -2.0064 30 1 8.0191 -1.4140 -2.3302 31 1 9.9534 -2.7242 -3.1008 32 1 7.6410 -6.3047 -2.8736 33 1 2.4431 -7.0321 -1.0881 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814120965.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:55 Heat of formation + Delta-G solvation = -37.960588 kcal Electronic energy + Delta-G solvation = -24589.727745 eV Core-core repulsion = 20497.921004 eV Total energy + Delta-G solvation = -4091.806741 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.069 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.84131 -43.94964 -41.63315 -40.19716 -38.06896 -37.89324 -35.82088 -34.37605 -34.29454 -31.96043 -31.07303 -29.90562 -27.45621 -25.98613 -24.13674 -23.45423 -22.83938 -21.71507 -20.60098 -20.18406 -19.72547 -19.01394 -18.26187 -17.81031 -17.09051 -16.96527 -16.60744 -16.18953 -16.01226 -15.74116 -15.52942 -15.42923 -15.26365 -14.97356 -14.61530 -14.59275 -14.28289 -14.15433 -14.04881 -13.81548 -13.58703 -13.47642 -13.05825 -12.62877 -12.37332 -12.15457 -11.73571 -11.49332 -11.20966 -11.13431 -10.85203 -9.93966 -9.59332 -8.84178 -8.53660 -6.20291 -0.64677 0.16147 0.44669 0.65684 0.83614 1.35629 1.42717 1.51150 1.65091 1.86212 1.98197 2.07709 2.12213 2.63627 2.77600 2.99613 3.17642 3.43376 3.58570 3.71623 3.93033 4.16921 4.27629 4.31717 4.39079 4.53848 4.80681 4.89565 4.97650 5.18131 5.20897 5.26967 5.32354 5.37891 5.56922 5.89586 5.98861 6.04674 6.25701 6.79310 6.91088 7.58649 8.66535 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.004670 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.871170 B = 5994.257745 C = 8705.127923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.308 3.692 3 C 0.051 3.949 4 C -0.096 4.096 5 C -0.104 4.104 6 C -0.049 4.049 7 C 0.598 3.402 8 O -0.521 6.521 9 N -0.640 5.640 10 C 0.050 3.950 11 C -0.043 4.043 12 C -0.202 4.202 13 C 0.130 3.870 14 F -0.143 7.143 15 C -0.266 4.266 16 C 0.135 3.865 17 O -0.204 6.204 18 C -0.415 4.415 19 H 0.102 0.898 20 C -0.010 4.010 21 N -0.906 5.906 22 Si 1.012 2.988 23 H -0.265 1.265 24 H -0.272 1.272 25 H -0.254 1.254 26 O -0.162 6.162 27 H 0.216 0.784 28 H 0.200 0.800 29 H 0.418 0.582 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.136 0.864 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 13.376 2.061 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.007 4.007 3 C -0.003 4.003 4 C -0.118 4.118 5 C -0.124 4.124 6 C -0.104 4.104 7 C 0.386 3.614 8 O -0.400 6.400 9 N -0.283 5.283 10 C -0.044 4.044 11 C -0.063 4.063 12 C -0.222 4.222 13 C 0.110 3.890 14 F -0.122 7.122 15 C -0.287 4.287 16 C 0.082 3.918 17 O -0.109 6.109 18 C -0.491 4.491 19 H 0.120 0.880 20 C -0.210 4.210 21 N -0.542 5.542 22 Si 0.831 3.169 23 H -0.190 1.190 24 H -0.197 1.197 25 H -0.178 1.178 26 O -0.056 6.056 27 H 0.233 0.767 28 H 0.217 0.783 29 H 0.255 0.745 30 H 0.180 0.820 31 H 0.181 0.819 32 H 0.154 0.846 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.953 13.378 2.180 13.873 hybrid contribution -0.187 -1.643 -0.338 1.688 sum 2.767 11.735 1.842 12.197 Atomic orbital electron populations 1.81364 1.11436 1.07194 1.08284 1.23539 0.89603 0.93904 0.93639 1.17139 0.84132 0.95378 1.03626 1.22625 0.89873 0.99789 0.99485 1.22306 1.00151 0.93721 0.96243 1.22121 0.80490 1.01161 1.06605 1.16838 0.86782 0.79928 0.77817 1.90827 1.22034 1.67130 1.60012 1.43090 1.09956 1.27116 1.48152 1.17104 0.90476 0.86897 1.09916 1.20927 0.89585 1.01080 0.94704 1.20923 1.01518 0.90931 1.08841 1.17508 0.82746 0.90130 0.98617 1.91437 1.54315 1.78717 1.87717 1.20937 0.93049 1.01729 1.12977 1.19185 0.86750 0.90843 0.95052 1.83901 1.26943 1.22291 1.77746 1.21760 1.01931 0.78319 1.47046 0.88049 1.26416 0.93770 1.05578 0.95196 1.70137 1.03554 1.38445 1.42089 0.84670 0.78538 0.74064 0.79583 1.19047 1.19675 1.17765 1.84145 1.16306 1.47396 1.57779 0.76689 0.78280 0.74540 0.82013 0.81893 0.84632 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -10.87 18.54 19.00 0.35 -10.52 16 2 C 0.31 7.06 15.89 88.33 1.40 8.47 16 3 C 0.05 1.04 7.10 23.40 0.17 1.21 16 4 C -0.10 -1.23 10.86 22.56 0.25 -0.98 16 5 C -0.10 -1.71 10.58 22.31 0.24 -1.47 16 6 C -0.05 -1.23 7.12 24.19 0.17 -1.06 16 7 C 0.60 18.60 7.64 86.53 0.66 19.27 16 8 O -0.52 -17.01 14.27 -4.27 -0.06 -17.08 16 9 N -0.64 -22.91 5.18 -306.36 -1.59 -24.49 16 10 C 0.05 1.97 6.33 38.27 0.24 2.21 16 11 C -0.04 -1.43 8.69 22.38 0.19 -1.24 16 12 C -0.20 -6.34 10.02 22.33 0.22 -6.12 16 13 C 0.13 4.69 7.29 22.37 0.16 4.85 16 14 F -0.14 -4.91 17.26 44.97 0.78 -4.13 16 15 C -0.27 -11.19 9.14 22.42 0.20 -10.98 16 16 C 0.14 6.14 6.67 22.70 0.15 6.30 16 17 O -0.20 -10.91 9.31 -22.58 -0.21 -11.12 16 18 C -0.41 -22.33 9.49 67.92 0.64 -21.69 16 19 H 0.10 5.08 5.20 -2.91 -0.02 5.07 16 20 C -0.01 -0.53 5.49 84.83 0.47 -0.06 16 21 N -0.91 -51.60 13.67 21.61 0.30 -51.31 16 22 Si 1.01 40.78 29.55 68.60 2.03 42.81 16 23 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 26 O -0.16 -4.26 10.41 -8.61 -0.09 -4.35 16 27 H 0.22 0.83 8.06 -2.91 -0.02 0.81 16 28 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.42 15.37 8.32 -92.70 -0.77 14.60 16 30 H 0.16 4.83 6.19 -2.91 -0.02 4.81 16 31 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.14 5.83 5.64 -2.91 -0.02 5.81 16 33 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -66.09 319.64 7.14 -58.96 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.46 Total: 22.53 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.17 Total: -1.30 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -0.94 Total: -86.32 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.36 Total: -32.55 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.78 Total: -4.13 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -66.09 7.14 -58.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814120965.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.997 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds