Wall clock time and date at job start Tue Mar 31 2020 11:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.41593 * 114.00025 * 2 1 4 4 C 1.34776 * 120.00477 * 270.00213 * 3 2 1 5 5 O 1.21283 * 119.99876 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99804 * 0.02562 * 4 3 2 7 7 S 1.80999 * 109.46838 * 179.97438 * 6 4 3 8 8 C 1.76204 * 99.99797 * 179.97438 * 7 6 4 9 9 H 1.07996 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.38803 * 119.99558 * 179.97438 * 8 7 6 11 11 N 1.31623 * 120.00405 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99318 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47319 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46902 * 120.00308 * 12 10 8 15 15 H 1.48505 * 109.47316 * 239.99747 * 12 10 8 16 16 C 1.46505 * 119.99711 * 90.00518 * 3 2 1 17 17 H 1.09002 * 109.47068 * 359.97438 * 16 3 2 18 18 C 1.53002 * 109.47411 * 119.99975 * 16 3 2 19 19 C 1.50703 * 109.47064 * 239.99925 * 16 3 2 20 20 C 1.33639 * 122.75156 * 155.00047 * 19 16 3 21 21 S 1.76192 * 107.92526 * 179.97438 * 20 19 16 22 22 C 1.70971 * 90.28533 * 359.97438 * 21 20 19 23 23 C 1.50703 * 124.92075 * 179.97438 * 22 21 20 24 24 N 1.29035 * 110.16810 * 359.73611 * 22 21 20 25 25 H 1.08994 * 109.46801 * 299.99735 * 1 2 3 26 26 H 1.09000 * 109.47321 * 59.99498 * 1 2 3 27 27 H 1.08994 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47120 * 299.99705 * 6 4 3 29 29 H 1.08988 * 109.47080 * 60.00282 * 6 4 3 30 30 H 0.97001 * 119.99932 * 180.02562 * 11 10 8 31 31 H 1.08996 * 109.47407 * 180.02562 * 18 16 3 32 32 H 1.09000 * 109.46986 * 300.00092 * 18 16 3 33 33 H 1.09002 * 109.47075 * 59.99363 * 18 16 3 34 34 H 1.07998 * 126.03210 * 359.97438 * 20 19 16 35 35 H 1.09001 * 109.46385 * 0.02624 * 23 22 21 36 36 H 1.08992 * 109.47035 * 120.02429 * 23 22 21 37 37 H 1.08997 * 109.47016 * 240.02719 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.2790 1.9092 -1.1671 5 8 2.7728 3.0170 -1.1670 6 6 1.9720 1.2212 -2.4723 7 16 2.4499 2.2961 -3.8479 8 6 1.9944 1.2728 -5.2082 9 1 1.5611 0.2997 -5.0305 10 6 2.1916 1.7181 -6.5080 11 7 2.7192 2.9043 -6.7245 12 14 1.7080 0.6335 -7.9500 13 1 1.1405 -0.6413 -7.4422 14 1 0.6916 1.3330 -8.7764 15 1 2.9071 0.3471 -8.7780 16 6 2.3030 1.9626 1.2688 17 1 2.0145 1.3156 2.0973 18 6 3.8020 2.2581 1.3499 19 6 1.5313 3.2546 1.3488 20 6 1.2034 3.8302 2.5094 21 16 0.3149 5.3086 2.1496 22 6 0.4732 5.0061 0.4743 23 6 -0.0711 5.8911 -0.6173 24 7 1.1306 3.9129 0.2798 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 2.5298 0.2865 -2.5303 29 1 0.9041 1.0112 -2.5298 30 1 2.8566 3.2155 -7.6329 31 1 4.0238 2.7555 2.2940 32 1 4.3601 1.3236 1.2920 33 1 4.0901 2.9051 0.5213 34 1 1.4411 3.4554 3.4940 35 1 -0.5770 6.7477 -0.1720 36 1 0.7489 6.2395 -1.2452 37 1 -0.7787 5.3262 -1.2241 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836800794.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:30 Heat of formation + Delta-G solvation = 33.478659 kcal Electronic energy + Delta-G solvation = -22441.438784 eV Core-core repulsion = 19054.387008 eV Total energy + Delta-G solvation = -3387.051776 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.40992 -38.76153 -36.94935 -34.47308 -32.37773 -31.76300 -30.40065 -28.65656 -27.85201 -26.37601 -25.44370 -24.45884 -22.47532 -20.17575 -19.35209 -18.32110 -17.71901 -16.65685 -16.07299 -15.82020 -15.20759 -14.88454 -14.75893 -14.29767 -14.13780 -14.03399 -13.85486 -13.47892 -13.25932 -13.14747 -12.64916 -12.46869 -12.22642 -12.10227 -11.83985 -11.75621 -11.71720 -11.17450 -11.03024 -10.94467 -10.71800 -10.45634 -9.74599 -9.44144 -9.36781 -9.04815 -9.02103 -8.71746 -8.65602 -8.14901 -6.41822 -6.16881 -3.85451 0.71628 1.37138 1.67074 2.06865 2.87652 3.20812 3.24418 3.26669 3.33231 3.54073 4.08150 4.26017 4.39827 4.78619 4.97840 5.13258 5.15668 5.18598 5.21494 5.28287 5.31713 5.37420 5.52932 5.55252 5.61774 5.63207 5.84417 5.84756 5.99416 6.05896 6.17115 6.31633 6.38802 6.68554 7.65443 7.74929 7.91900 8.41217 8.69351 9.28942 10.90631 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.004076 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.408416 B = 6867.797209 C = 7645.757144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.143 6.143 3 N -0.480 5.480 4 C 0.550 3.450 5 O -0.462 6.462 6 C -0.141 4.141 7 S -0.060 6.060 8 C -0.532 4.532 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.869 5.869 12 Si 0.916 3.084 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.227 3.773 17 H 0.104 0.896 18 C -0.163 4.163 19 C 0.066 3.934 20 C -0.265 4.265 21 S 0.088 5.912 22 C 0.062 3.938 23 C -0.077 4.077 24 N -0.427 5.427 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.267 0.733 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.174 0.826 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 0.777 20.473 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.147 6.147 3 N -0.263 5.263 4 C 0.339 3.661 5 O -0.331 6.331 6 C -0.292 4.292 7 S 0.166 5.834 8 C -0.680 4.680 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.504 5.504 12 Si 0.743 3.257 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.122 3.878 17 H 0.122 0.878 18 C -0.221 4.221 19 C -0.069 4.069 20 C -0.404 4.404 21 S 0.343 5.657 22 C -0.217 4.217 23 C -0.137 4.137 24 N -0.141 5.141 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.191 0.809 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.527 3.039 20.363 21.317 hybrid contribution -0.852 -2.838 -0.808 3.071 sum -6.379 0.201 19.555 20.570 Atomic orbital electron populations 1.23329 0.82335 1.03267 1.01330 1.90612 1.19639 1.07693 1.96719 1.50325 1.60523 1.10009 1.05456 1.20216 0.77614 0.84850 0.83418 1.90702 1.40820 1.17119 1.84466 1.23461 1.04430 1.04519 0.96759 1.85261 1.82109 1.22722 0.93269 1.22918 1.47804 1.05003 0.92270 0.91006 1.24962 0.94815 0.95446 0.98282 1.70029 1.41424 1.17564 1.21411 0.86154 0.78298 0.80044 0.81235 1.19627 1.20630 1.20580 1.19651 0.94612 0.87252 0.86331 0.87768 1.22206 0.92670 1.03399 1.03813 1.20632 1.00240 0.98874 0.87110 1.26591 1.10144 1.00639 1.03045 1.83826 1.52661 1.23533 1.05685 1.27285 1.00112 0.97199 0.97070 1.20448 1.02111 0.96471 0.94688 1.66311 1.10090 1.06113 1.31564 0.93528 0.92630 0.87999 0.89201 0.89999 0.92353 0.91431 0.91305 0.89431 0.80851 0.90731 0.88698 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 11.44 101.05 1.16 1.10 16 2 O -0.14 -2.11 10.83 -11.47 -0.12 -2.24 16 3 N -0.48 -7.88 2.88 -54.93 -0.16 -8.03 16 4 C 0.55 11.14 6.59 -10.99 -0.07 11.07 16 5 O -0.46 -10.38 11.46 5.55 0.06 -10.31 16 6 C -0.14 -3.12 5.46 36.01 0.20 -2.92 16 7 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 8 C -0.53 -15.46 9.50 30.94 0.29 -15.17 16 9 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 10 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 11 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 12 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.23 3.07 3.28 -69.08 -0.23 2.85 16 17 H 0.10 1.10 8.12 -51.93 -0.42 0.68 16 18 C -0.16 -2.12 9.10 37.16 0.34 -1.78 16 19 C 0.07 0.93 5.56 -84.22 -0.47 0.47 16 20 C -0.26 -2.96 11.14 29.12 0.32 -2.64 16 21 S 0.09 0.96 23.17 -107.50 -2.49 -1.54 16 22 C 0.06 0.88 7.39 -13.45 -0.10 0.78 16 23 C -0.08 -0.92 10.47 36.01 0.38 -0.55 16 24 N -0.43 -7.19 7.01 -8.05 -0.06 -7.25 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.75 7.13 -51.93 -0.37 0.38 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.09 1.94 8.14 -51.92 -0.42 1.51 16 29 H 0.08 1.74 7.13 -51.92 -0.37 1.37 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.46 6.17 -51.93 -0.32 1.14 16 34 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -34.85 343.28 -7.20 -42.06 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -4.83 Total: -0.29 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 1.72 Total: -4.75 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.52 Total: -40.92 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.06 Total: -12.55 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -4.70 Total: -5.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.85 -7.20 -42.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836800794.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.534 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds