Wall clock time and date at job start Tue Mar 31 2020 11:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.41593 * 114.00025 * 2 1 4 4 C 1.34776 * 120.00477 * 270.00213 * 3 2 1 5 5 O 1.21283 * 119.99876 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99804 * 0.02562 * 4 3 2 7 7 S 1.80999 * 109.46838 * 179.97438 * 6 4 3 8 8 C 1.76204 * 99.99797 * 179.97438 * 7 6 4 9 9 H 1.07996 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.38803 * 119.99558 * 179.97438 * 8 7 6 11 11 N 1.31623 * 120.00405 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99318 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47319 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46902 * 120.00308 * 12 10 8 15 15 H 1.48505 * 109.47316 * 239.99747 * 12 10 8 16 16 C 1.46505 * 119.99711 * 90.00518 * 3 2 1 17 17 H 1.09002 * 109.47068 * 359.97438 * 16 3 2 18 18 C 1.53002 * 109.47411 * 119.99975 * 16 3 2 19 19 C 1.50703 * 109.47064 * 239.99925 * 16 3 2 20 20 C 1.33639 * 122.75156 * 155.00047 * 19 16 3 21 21 S 1.76192 * 107.92526 * 179.97438 * 20 19 16 22 22 C 1.70971 * 90.28533 * 359.97438 * 21 20 19 23 23 C 1.50703 * 124.92075 * 179.97438 * 22 21 20 24 24 N 1.29035 * 110.16810 * 359.73611 * 22 21 20 25 25 H 1.08994 * 109.46801 * 299.99735 * 1 2 3 26 26 H 1.09000 * 109.47321 * 59.99498 * 1 2 3 27 27 H 1.08994 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47120 * 299.99705 * 6 4 3 29 29 H 1.08988 * 109.47080 * 60.00282 * 6 4 3 30 30 H 0.97001 * 119.99932 * 180.02562 * 11 10 8 31 31 H 1.08996 * 109.47407 * 180.02562 * 18 16 3 32 32 H 1.09000 * 109.46986 * 300.00092 * 18 16 3 33 33 H 1.09002 * 109.47075 * 59.99363 * 18 16 3 34 34 H 1.07998 * 126.03210 * 359.97438 * 20 19 16 35 35 H 1.09001 * 109.46385 * 0.02624 * 23 22 21 36 36 H 1.08992 * 109.47035 * 120.02429 * 23 22 21 37 37 H 1.08997 * 109.47016 * 240.02719 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.2790 1.9092 -1.1671 5 8 2.7728 3.0170 -1.1670 6 6 1.9720 1.2212 -2.4723 7 16 2.4499 2.2961 -3.8479 8 6 1.9944 1.2728 -5.2082 9 1 1.5611 0.2997 -5.0305 10 6 2.1916 1.7181 -6.5080 11 7 2.7192 2.9043 -6.7245 12 14 1.7080 0.6335 -7.9500 13 1 1.1405 -0.6413 -7.4422 14 1 0.6916 1.3330 -8.7764 15 1 2.9071 0.3471 -8.7780 16 6 2.3030 1.9626 1.2688 17 1 2.0145 1.3156 2.0973 18 6 3.8020 2.2581 1.3499 19 6 1.5313 3.2546 1.3488 20 6 1.2034 3.8302 2.5094 21 16 0.3149 5.3086 2.1496 22 6 0.4732 5.0061 0.4743 23 6 -0.0711 5.8911 -0.6173 24 7 1.1306 3.9129 0.2798 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 2.5298 0.2865 -2.5303 29 1 0.9041 1.0112 -2.5298 30 1 2.8566 3.2155 -7.6329 31 1 4.0238 2.7555 2.2940 32 1 4.3601 1.3236 1.2920 33 1 4.0901 2.9051 0.5213 34 1 1.4411 3.4554 3.4940 35 1 -0.5770 6.7477 -0.1720 36 1 0.7489 6.2395 -1.2452 37 1 -0.7787 5.3262 -1.2241 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836800794.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:30 Heat of formation + Delta-G solvation = 10.465236 kcal Electronic energy + Delta-G solvation = -22442.436721 eV Core-core repulsion = 19054.387008 eV Total energy + Delta-G solvation = -3388.049713 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54846 -40.01870 -38.25986 -35.56845 -34.59246 -32.86400 -31.76228 -30.04383 -28.88055 -27.69014 -27.39759 -25.51976 -23.60511 -21.41221 -20.42479 -19.96204 -19.14974 -18.23735 -17.23336 -17.02733 -16.88902 -16.26907 -15.93091 -15.84316 -15.60285 -15.27389 -15.08217 -14.99492 -14.46957 -14.25692 -14.15191 -13.71754 -13.30916 -13.16885 -13.13969 -13.02491 -12.91746 -12.80714 -12.76518 -12.59340 -12.22745 -11.72961 -11.58384 -11.15943 -10.62654 -10.43002 -10.28501 -10.27689 -9.90806 -9.61868 -8.65060 -8.35262 -6.12196 -0.21648 0.49047 0.66745 0.90448 1.31455 1.39820 1.49373 1.61946 1.71154 1.90875 2.26719 2.95301 2.98552 3.19469 3.43767 3.82850 4.02076 4.12447 4.17998 4.24291 4.33408 4.35555 4.38842 4.40603 4.49067 4.61162 4.62293 4.65960 4.76633 4.85178 5.01475 5.19281 5.30862 5.40732 5.47401 6.19273 6.43467 6.98777 7.05938 7.21322 8.74243 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.004076 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.408416 B = 6867.797209 C = 7645.757144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.149 6.149 3 N -0.474 5.474 4 C 0.551 3.449 5 O -0.491 6.491 6 C -0.118 4.118 7 S -0.132 6.132 8 C -0.549 4.549 9 H 0.075 0.925 10 C 0.018 3.982 11 N -0.909 5.909 12 Si 0.996 3.004 13 H -0.260 1.260 14 H -0.271 1.271 15 H -0.271 1.271 16 C 0.224 3.776 17 H 0.142 0.858 18 C -0.157 4.157 19 C 0.033 3.967 20 C -0.248 4.248 21 S 0.157 5.843 22 C 0.023 3.977 23 C -0.075 4.075 24 N -0.476 5.476 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.136 0.864 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.272 0.728 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.213 0.787 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 -0.589 22.763 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.153 6.153 3 N -0.255 5.255 4 C 0.339 3.661 5 O -0.363 6.363 6 C -0.269 4.269 7 S 0.096 5.904 8 C -0.697 4.697 9 H 0.093 0.907 10 C -0.187 4.187 11 N -0.546 5.546 12 Si 0.818 3.182 13 H -0.184 1.184 14 H -0.196 1.196 15 H -0.197 1.197 16 C 0.120 3.880 17 H 0.160 0.840 18 C -0.215 4.215 19 C -0.100 4.100 20 C -0.387 4.387 21 S 0.412 5.588 22 C -0.255 4.255 23 C -0.135 4.135 24 N -0.191 5.191 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.154 0.846 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.229 0.771 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.772 1.664 22.694 23.741 hybrid contribution -0.514 -2.405 -1.327 2.795 sum -7.286 -0.741 21.367 22.587 Atomic orbital electron populations 1.23521 0.80542 1.05309 1.00968 1.90591 1.21426 1.06488 1.96759 1.50066 1.59794 1.10296 1.05358 1.19745 0.77918 0.84539 0.83922 1.90698 1.42191 1.18197 1.85172 1.23267 1.04522 1.03208 0.95942 1.85353 1.82889 1.25838 0.96369 1.23217 1.48302 1.05181 0.92995 0.90653 1.26068 0.94298 0.96933 1.01425 1.70175 1.42389 1.19582 1.22435 0.84946 0.78263 0.78137 0.76848 1.18389 1.19623 1.19673 1.20016 0.94783 0.87720 0.85481 0.84049 1.22150 0.92702 1.03023 1.03617 1.20706 1.02070 0.99628 0.87633 1.27076 1.07856 1.00060 1.03746 1.83505 1.50970 1.22336 1.02006 1.27465 1.01004 0.97357 0.99639 1.20449 1.01197 0.97315 0.94552 1.66265 1.11308 1.07600 1.33976 0.92056 0.94780 0.84632 0.88862 0.89440 0.91923 0.88337 0.90752 0.93663 0.77054 0.87435 0.91024 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 11.44 113.37 1.30 1.17 16 2 O -0.15 -4.17 10.83 -38.77 -0.42 -4.59 16 3 N -0.47 -15.27 2.88 -446.07 -1.28 -16.56 16 4 C 0.55 22.99 6.59 87.66 0.58 23.57 16 5 O -0.49 -23.21 11.46 -3.04 -0.03 -23.24 16 6 C -0.12 -5.40 5.46 71.24 0.39 -5.01 16 7 S -0.13 -7.64 20.57 -56.49 -1.16 -8.80 16 8 C -0.55 -32.74 9.50 67.96 0.65 -32.09 16 9 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 10 C 0.02 1.03 5.49 84.86 0.47 1.50 16 11 N -0.91 -56.66 13.22 21.65 0.29 -56.37 16 12 Si 1.00 44.74 29.55 68.60 2.03 46.77 16 13 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 C 0.22 5.66 3.28 44.25 0.15 5.80 16 17 H 0.14 2.45 8.12 -2.39 -0.02 2.43 16 18 C -0.16 -3.91 9.10 71.98 0.66 -3.25 16 19 C 0.03 0.89 5.56 41.52 0.23 1.13 16 20 C -0.25 -4.72 11.14 66.78 0.74 -3.98 16 21 S 0.16 3.00 23.17 -56.49 -1.31 1.69 16 22 C 0.02 0.65 7.39 88.52 0.65 1.31 16 23 C -0.07 -1.89 10.47 71.24 0.75 -1.14 16 24 N -0.48 -16.23 7.01 -179.39 -1.26 -17.49 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.03 0.90 7.13 -2.39 -0.02 0.88 16 27 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.09 4.12 8.14 -2.39 -0.02 4.10 16 29 H 0.09 3.83 7.13 -2.40 -0.02 3.82 16 30 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.54 6.17 -2.39 -0.01 1.52 16 34 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.11 1.84 8.12 -2.39 -0.02 1.82 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -79.83 343.28 4.48 -75.35 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.08 Total: 14.25 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 6.55 Total: -11.00 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -2.26 Total: -90.42 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.45 Total: -27.84 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -2.47 Total: -7.11 kcal Total: -79.83 4.48 -75.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836800794.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.816 kcal (2) G-P(sol) polarization free energy of solvation -79.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds